BP919064 |
Clone id |
YMU001_000120_G10 |
Library |
YMU01 |
Length |
484 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000120_G10. |
Accession |
BP919064 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
CATTCTCATGACTGTCAGAATATACAATGCAATAGGTGAGACATGGAAGACGCATAGTGT GTCAGAATTCATGATTCACCTCATTAACATACAAAAGCAATCATTGAGCAAGGGCACTGG TGTTGTACACTAAGAGGGCACCACCCAACAAGATAGCGCCGAGGGTAATTGCCCAGATAG CCAATCCAGTAGGACCTGCAGCATAGCTATCACCAGAAGTTGACCATTCCTCTGAGACAT AGATAGGGCTGTATCCATCGACATTAGCACCATACTTCTTGGTATATTGGTAGACTCCCT TTCCCTTAGCTTTGCGACCAGAGGCATCCAGGTTACCCTTGAATTTGGTATCGCCGGAAG GTCCCAAGGGAGTTTTGGTCGAGATCTTCTTGACACCGCTTGCCTCGATTCTGAGGGAGC GGGCGGATAGCTTAGGAGAGAGGGAGGGGATGCCCTGCACCTGAACGCCAGAGAATTCCG ACTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
119.0 |
E-value |
9.0e-27 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919064|Adiantum capillus-veneris mRNA, clone: YMU001_000120_G10. (484 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 119 9e-27 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 117 2e-26 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 116 5e-26 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 115 8e-26 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 114 2e-25 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 110 4e-24 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 108 2e-23 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 32 1.5 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 5.7 sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda sa... 30 5.7 sp|P43691|GATA4_CHICK Transcription factor GATA-4 (Fragment) OS=... 30 5.7 sp|A9F8Z2|PNP_SORC5 Polyribonucleotide nucleotidyltransferase OS... 29 9.8 sp|O54908|DKK1_MOUSE Dickkopf-related protein 1 OS=Mus musculus ... 29 9.8
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 119 bits (297), Expect = 9e-27 Identities = 63/121 (52%), Positives = 76/121 (62%) Frame = -1
Query: 466 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 287 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 286 YTKKYGANVDGYSPIYVSEEWSTSGDSYAAGPTXXXXXXXXXXXXXXXXXXLVYNTSALA 107 Y KYGANVDGYSPIY ++EWS SGD Y G T LVYNTSALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 106 Q 104 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 117 bits (294), Expect = 2e-26 Identities = 63/119 (52%), Positives = 75/119 (63%) Frame = -1
Query: 460 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 281 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 280 KKYGANVDGYSPIYVSEEWSTSGDSYAAGPTXXXXXXXXXXXXXXXXXXLVYNTSALAQ 104 KYGANVDGYSPIY ++EWS SGD Y G T LVYNTSALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 116 bits (291), Expect = 5e-26 Identities = 61/119 (51%), Positives = 76/119 (63%) Frame = -1
Query: 460 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 281 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 280 KKYGANVDGYSPIYVSEEWSTSGDSYAAGPTXXXXXXXXXXXXXXXXXXLVYNTSALAQ 104 KYGANVDGYSPIY +++WS SGD Y G T LV+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 115 bits (289), Expect = 8e-26 Identities = 63/119 (52%), Positives = 73/119 (61%) Frame = -1
Query: 460 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 281 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 280 KKYGANVDGYSPIYVSEEWSTSGDSYAAGPTXXXXXXXXXXXXXXXXXXLVYNTSALAQ 104 KYGANVDGYSPIY EEW+ +GD YA G T LVYNTSALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 114 bits (285), Expect = 2e-25 Identities = 62/121 (51%), Positives = 73/121 (60%) Frame = -1
Query: 466 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 287 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 286 YTKKYGANVDGYSPIYVSEEWSTSGDSYAAGPTXXXXXXXXXXXXXXXXXXLVYNTSALA 107 + KYGANVDGYSPIY +EWS SGD Y G T LVYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 106 Q 104 Q Sbjct: 141 Q 141
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 110 bits (274), Expect = 4e-24 Identities = 61/118 (51%), Positives = 70/118 (59%) Frame = -1
Query: 457 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 278 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 277 KYGANVDGYSPIYVSEEWSTSGDSYAAGPTXXXXXXXXXXXXXXXXXXLVYNTSALAQ 104 KYGANVDGYSPIY EWS SGD Y G T LVYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 108 bits (269), Expect = 2e-23 Identities = 63/126 (50%), Positives = 70/126 (55%) Frame = -1
Query: 484 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 305 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 304 GKGVYQYTKKYGANVDGYSPIYVSEEWSTSGDSYAAGPTXXXXXXXXXXXXXXXXXXLVY 125 GKGVYQ+ KYGANVDGYSPIY EEWS SGD Y G T LVY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 124 NTSALA 107 +TSALA Sbjct: 132 STSALA 137
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 32.0 bits (71), Expect = 1.5 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = -1
Query: 466 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 305 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 304 GKGVYQYTKKYGANVDGYSPIYVSEEW 224 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplO PE=3 SV=1 Length = 146
Score = 30.0 bits (66), Expect = 5.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1
Query: 484 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTK 374 KSE SG+++ G SL KL+ ++ + AS + I K Sbjct: 103 KSEKSGIKILGTGSLDKKLTVKASKFSASAAEAIDAK 139
>sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1 Length = 214
Score = 30.0 bits (66), Expect = 5.7 Identities = 24/66 (36%), Positives = 35/66 (53%) Frame = -1
Query: 481 SEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKG 302 S+F G+++ SLSP L RS + AS V K+S + + P+ K + + S K KG Sbjct: 37 SQFCGIKLSHSSSLSPPLYPRSYK--ASIVAKVS-EGSMPPAFTLKDQDGKNVSLSKFKG 93
Query: 301 KGVYQY 284 K V Y Sbjct: 94 KPVVVY 99
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7M9 |
Definition |
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
126 |
Score (bit) |
129.0 |
E-value |
5.0e-29 |
Report |
 |