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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919073
Clone id YMU001_000120_H10
Library
Length 464
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGTGGGGAAATGGGCTTTTGAACAAGCTGTAAAAGTGGATAGAAGTGATGAGACATCTT
ACATTCTCCTTGGGAATATTTATGCCGCAGCGGGCATGAAAGATAAGGCAAAAGATATTG
AAGCCTTGAGAATTAGGGCCAAGGCATGAAAGGCTACAAAGGGTAATGTGCTTTGTTATC
TGTTGGAGAAGTTGGCCCTTGCATGTGCAGTGATTAGCACACCTCTCAGACAAATGAGGA
TTGTTATGTTGGTGCATAACAAACAATTGTGGCCTTGATTACACCAGTTTTTGTCATTGA
TTTGGAGATGGAAAGTGTTTTGTAGCGATCACGAAAGATTAGGTGGCTCCCTTGTGCATA
ATCAATCACTTTCAGGGGACATTGTGATTGCCATTCAATGCTTCGCTTATATCTAATTTA
AATACTCCCGCAATTGTGATCATGAATACCAATTTCTGTCATCA
■■Homology search results ■■ -
sp_hit_id Q9C9I6
Definition sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana
Align length 42
Score (bit) 36.2
E-value 0.066
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919073|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_H10.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protei...    36   0.066
sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protei...    34   0.25 
sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protei...    34   0.25 
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protei...    34   0.25 
sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protei...    34   0.33 
sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containi...    34   0.33 
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei...    33   0.43 
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protei...    32   1.2  
sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protei...    32   1.2  
sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protei...    32   1.2  
sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protei...    32   1.6  
sp|O14639|ABLM1_HUMAN Actin-binding LIM protein 1 OS=Homo sapien...    32   1.6  
sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containi...    31   2.1  
sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protei...    31   2.8  
sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protei...    31   2.8  
sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protei...    31   2.8  
sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protei...    31   2.8  
sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protei...    31   2.8  
sp|Q9M2Y4|PP276_ARATH Pentatricopeptide repeat-containing protei...    30   3.6  
sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protei...    30   3.6  
sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protei...    30   3.6  
sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protei...    30   4.7  
sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containi...    30   4.7  
sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protei...    30   4.7  
sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2         30   4.7  
sp|Q16CP0|DXS2_ROSDO 1-deoxy-D-xylulose-5-phosphate synthase 2 O...    30   4.7  
sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protei...    30   6.1  
sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protei...    30   6.1  
sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protei...    30   6.1  
sp|Q8HZI9|LAMC2_HORSE Laminin subunit gamma-2 OS=Equus caballus ...    30   6.1  

>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein
           At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
          Length = 681

 Score = 36.2 bits (82), Expect = 0.066
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEAL 128
           +GKWA E+ +++   +   Y+L+ N+YAAAG   K  ++  +
Sbjct: 569 IGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTI 610


>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-H81 PE=2 SV=2
          Length = 890

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 13/39 (33%), Positives = 28/39 (71%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDI 119
           +G+ A +  ++++ +  + Y+LL NIY++AG+ DKA ++
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743


>sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein
           At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1
          Length = 794

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 18/60 (30%), Positives = 35/60 (58%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEALRIRAKA*KATKGNVLCYL 182
           +G +A EQ +K+D  D  ++ILL N+YA  G   + +D+  +R + +   ++K   L ++
Sbjct: 690 IGLYAAEQILKLDPEDTATHILLSNLYAVNG---RWEDVAEMRRKIRGLASSKDPGLSWI 746


>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein
           At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
          Length = 694

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEALRIRAKA*KATKGNVLCYL 182
           +G++A +Q   +D S+   Y+ L N+YAAA + D+  ++   R+R K  K    +V C  
Sbjct: 509 LGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEV---RVRMKE-KGLNKDVGCSW 564

Query: 183 LE 188
           +E
Sbjct: 565 VE 566


>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein
           At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
          Length = 903

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDI 119
           V + A    +++D  D ++Y LL N+YA AGM +K  D+
Sbjct: 791 VAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDL 829


>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing
           protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22
           PE=3 SV=1
          Length = 743

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDI 119
           +GKWA E  +++D      Y LL +IYA+ G  D    +
Sbjct: 558 IGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQL 596


>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein
           At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
          Length = 548

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 20/79 (25%), Positives = 40/79 (50%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEALRIRAKA*KATKGNVLCYL 182
           +GK+A E+ + + + +   Y+LL NIYA+ G  D  + +  +    +  K T  +++   
Sbjct: 466 LGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEED 525

Query: 183 LEKLALACAVISTPLRQMR 239
            +KL +   + S P  + R
Sbjct: 526 DDKLMMRYLLSSEPESRSR 544


>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein
           At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
          Length = 741

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEAL 128
           +G+   E  +K++  +  SY+LL NIYA+AG  ++     AL
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRAL 597


>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein
            At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
          Length = 1064

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +3

Query: 3    VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEALRIRAKA*KATKG 164
            +G++A    ++++  D  +Y+LL N+YA +   D A+D+   +++ K  K   G
Sbjct: 879  IGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWD-ARDLTRQKMKEKGVKKEPG 931


>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein
           At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
          Length = 597

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEALRIRAKA*KATKGNVLCYL 182
           +GK A ++ +K+D      YILL +IYA  G   K + +E LR   K  +  K   + ++
Sbjct: 499 LGKKAADELIKLDPESSAPYILLSSIYADHG---KWELVEKLRGVMKKRRVNKEKAVSWI 555

Query: 183 -LEKLALACAVIS---TPLRQMRIVMLVHN 260
            +EK   A  V        R+  I  ++HN
Sbjct: 556 EIEKKVEAFTVSDGSHAHARKEEIYFILHN 585
tr_hit_id A7NVQ5
Definition tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera
Align length 42
Score (bit) 39.7
E-value 0.077
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919073|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_H10.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome...    40   0.077
tr|Q8S693|Q8S693_ORYSJ Putative uncharacterized protein OJ1004_D...    39   0.100
tr|Q10IY6|Q10IY6_ORYSJ Os03g0441400 protein OS=Oryza sativa subs...    39   0.100
tr|A2XIE6|A2XIE6_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.100
tr|A7PL13|A7PL13_VITVI Chromosome chr7 scaffold_20, whole genome...    39   0.17 
tr|A5AZY0|A5AZY0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|B3U1P3|B3U1P3_9MARC Pentatricopeptide repeat protein (Fragmen...    38   0.22 
tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|Q1KUT6|Q1KUT6_9ROSI Putative uncharacterized protein OS=Cleom...    37   0.38 
tr|Q94I34|Q94I34_ORYSJ Putative selenium-binding protein-like (P...    37   0.50 
tr|A7P600|A7P600_VITVI Chromosome chr4 scaffold_6, whole genome ...    36   0.85 
tr|A7PNA8|A7PNA8_VITVI Chromosome chr1 scaffold_22, whole genome...    36   1.1  
tr|B3U1P2|B3U1P2_9MARC Pentatricopeptide repeat protein (Fragmen...    35   1.4  
tr|A7QFC9|A7QFC9_VITVI Chromosome undetermined scaffold_87, whol...    35   1.4  
tr|A5AYH4|A5AYH4_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A7PA64|A7PA64_VITVI Chromosome chr14 scaffold_9, whole genome...    35   1.9  
tr|Q6ZLQ1|Q6ZLQ1_ORYSJ Os07g0150000 protein OS=Oryza sativa subs...    35   2.5  
tr|Q6Z0F9|Q6Z0F9_ORYSJ Os08g0340900 protein OS=Oryza sativa subs...    35   2.5  
tr|Q6H4W1|Q6H4W1_ORYSJ Putative pentatricopeptide (PPR) repeat-c...    35   2.5  
tr|Q60EM0|Q60EM0_ORYSJ Os05g0455900 protein OS=Oryza sativa subs...    35   2.5  
tr|Q0E3L9|Q0E3L9_ORYSJ Os02g0167200 protein (Fragment) OS=Oryza ...    35   2.5  
tr|B8B9V6|B8B9V6_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|B8B7B5|B8B7B5_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|B8AIK6|B8AIK6_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A7PUI0|A7PUI0_VITVI Chromosome chr7 scaffold_31, whole genome...    35   2.5  
tr|A3BS46|A3BS46_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A3BGL5|A3BGL5_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A3A3I4|A3A3I4_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A2Y5C6|A2Y5C6_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|B3U1N4|B3U1N4_9MARC Pentatricopeptide repeat protein (Fragmen...    34   3.2  

>tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015527001
           PE=4 SV=1
          Length = 637

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEAL 128
           +GK   EQ + +D SD  +YI+L NIY+AAG+   A  + AL
Sbjct: 452 LGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRAL 493


>tr|Q8S693|Q8S693_ORYSJ Putative uncharacterized protein
           OJ1004_D04.31 OS=Oryza sativa subsp. japonica
           GN=OJ1004_D04.31 PE=4 SV=1
          Length = 1012

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 15/35 (42%), Positives = 28/35 (80%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDK 107
           +G+++ E+ ++++  DET+Y+LL N+YAAAG  D+
Sbjct: 652 LGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQ 686


>tr|Q10IY6|Q10IY6_ORYSJ Os03g0441400 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0441400 PE=2 SV=1
          Length = 837

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 15/35 (42%), Positives = 28/35 (80%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDK 107
           +G+++ E+ ++++  DET+Y+LL N+YAAAG  D+
Sbjct: 652 LGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQ 686


>tr|A2XIE6|A2XIE6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12205 PE=4 SV=1
          Length = 818

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 15/35 (42%), Positives = 28/35 (80%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDK 107
           +G+++ E+ ++++  DET+Y+LL N+YAAAG  D+
Sbjct: 633 LGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQ 667


>tr|A7PL13|A7PL13_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019394001
           PE=4 SV=1
          Length = 812

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDI 119
           +GK+A E A+  D  D  SYILL NI+A+ GM    K +
Sbjct: 706 LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKV 744


>tr|A5AZY0|A5AZY0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038220 PE=4 SV=1
          Length = 732

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDI 119
           +GK+A E A+  D  D  SYILL NI+A+ GM    K +
Sbjct: 627 LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKV 665


>tr|B3U1P3|B3U1P3_9MARC Pentatricopeptide repeat protein (Fragment)
           OS=Lepidogyna hodgsoniae GN=PPR PE=4 SV=1
          Length = 143

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/44 (36%), Positives = 30/44 (68%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEALRI 134
           +G+    + +++D  + + Y++L NIYAAAG  D++ DI+ LR+
Sbjct: 4   MGERIARKVLELDPQNASGYVMLSNIYAAAGKWDRSADIQQLRM 47


>tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031840 PE=4 SV=1
          Length = 714

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEAL 128
           +GK   EQ + +D SD  +YI+L NIY+AAG+   A  +  L
Sbjct: 529 LGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXL 570


>tr|Q1KUT6|Q1KUT6_9ROSI Putative uncharacterized protein OS=Cleome
           spinosa PE=4 SV=1
          Length = 924

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 30  VKVDRSDETSYILLGNIYAAAGMKDKAKDI 119
           +++D  D ++YILL NIYA AGM DKA ++
Sbjct: 808 LRLDPQDSSTYILLSNIYADAGMWDKASEL 837


>tr|Q94I34|Q94I34_ORYSJ Putative selenium-binding protein-like
           (Putative uncharacterized protein) (Pentatricopeptide,
           putative) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0050N08.17 PE=4 SV=1
          Length = 651

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +3

Query: 3   VGKWAFEQAVKVDRSDETSYILLGNIYAAAGMKDKAKDIEAL 128
           +G+ A  + V++D SD   Y+LL N+YA A M+ KA  + A+
Sbjct: 547 LGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAM 588