BP919080 |
Clone id |
YMU001_000121_A07 |
Library |
YMU01 |
Length |
469 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000121_A07. |
Accession |
BP919080 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CCATATTGCAAATCTTGAGCATCTGACTTGCATAGTGGATCTTCTCAGTCGTGCTGGCCA GTTAAACAAGGCAATTGCAATGACTCAATGGATGCCATGCCATCCTAATCTGGTCACATT TCATACAGTATTGAGTGCTTGTCGAAGAAACAGAAATCTGGAACTTGGGCTGCAAATGTT CACGCATGCCATTGAGTTGGATCGAGGAAACGCTGGTACGTATCTTACCTTGATGAACAT GTATGCAGATCCTGATTTGGAAACTTGCACGTATTCGACTCAAGGTAAAGATGCTGAGCA TGTTGGTGTCATTTTGTAATCACTCACATGCTAGATGGAGAGAAAGAAGTAGTTGGCTGC CAGAACTGGAGCACATCAATAATCCAAACACATCTACATCAAACAATTGAACTGATTAAT GTGAATGAAAGAGAGAGAAGTGGTGCTCAAGTGGTGCTCATAACAACCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9M9E2 |
Definition |
sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana |
Align length |
80 |
Score (bit) |
71.6 |
E-value |
2.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P8S8 |
Definition |
tr|A7P8S8|A7P8S8_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
78 |
Score (bit) |
77.4 |
E-value |
3.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919080|Adiantum capillus-veneris mRNA, clone: YMU001_000121_A07. (469 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P8S8|A7P8S8_VITVI Chromosome chr3 scaffold_8, whole genome ... 77 3e-13 tr|Q6ZLQ1|Q6ZLQ1_ORYSJ Os07g0150000 protein OS=Oryza sativa subs... 73 8e-12 tr|B8B7B5|B8B7B5_ORYSI Putative uncharacterized protein OS=Oryza... 73 8e-12 tr|A3BGL5|A3BGL5_ORYSJ Putative uncharacterized protein OS=Oryza... 73 8e-12 tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 72 1e-11 tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella paten... 72 1e-11 tr|A7P9A6|A7P9A6_VITVI Chromosome chr3 scaffold_8, whole genome ... 72 1e-11 tr|A5AN69|A5AN69_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11 tr|A7QUT6|A7QUT6_VITVI Chromosome chr1 scaffold_180, whole genom... 72 2e-11 tr|A7PZB8|A7PZB8_VITVI Chromosome chr15 scaffold_40, whole genom... 72 2e-11 tr|A5C8U0|A5C8U0_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-11 tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea... 71 3e-11 tr|A7Q9C2|A7Q9C2_VITVI Chromosome chr19 scaffold_66, whole genom... 71 3e-11 tr|A5APN9|A5APN9_VITVI Putative uncharacterized protein OS=Vitis... 71 3e-11 tr|A7Q5S4|A7Q5S4_VITVI Chromosome chr14 scaffold_54, whole genom... 70 4e-11 tr|Q6ZH58|Q6ZH58_ORYSJ cDNA clone:J023139G21, full insert sequen... 70 5e-11 tr|Q6ZH57|Q6ZH57_ORYSJ Pentatricopeptide (PPR) repeat-containing... 70 5e-11 tr|Q0DX78|Q0DX78_ORYSJ Os02g0769900 protein (Fragment) OS=Oryza ... 70 5e-11 tr|A7P4F3|A7P4F3_VITVI Chromosome chr4 scaffold_6, whole genome ... 70 5e-11 tr|A7R1T6|A7R1T6_VITVI Chromosome undetermined scaffold_376, who... 70 7e-11 tr|A7PL92|A7PL92_VITVI Chromosome chr7 scaffold_20, whole genome... 70 7e-11 tr|A5AVZ9|A5AVZ9_VITVI Putative uncharacterized protein OS=Vitis... 69 9e-11 tr|Q2HUK9|Q2HUK9_MEDTR Tetratricopeptide-like helical OS=Medicag... 69 1e-10 tr|Q7XV62|Q7XV62_ORYSJ OSJNBa0006B20.5 protein (Putative unchara... 69 2e-10 tr|B8AU15|B8AU15_ORYSI Putative uncharacterized protein OS=Oryza... 69 2e-10 tr|A7PYB1|A7PYB1_VITVI Chromosome chr15 scaffold_37, whole genom... 69 2e-10 tr|A7NWV1|A7NWV1_VITVI Chromosome chr5 scaffold_2, whole genome ... 69 2e-10 tr|A7NVM6|A7NVM6_VITVI Chromosome chr18 scaffold_1, whole genome... 69 2e-10 tr|A5BML2|A5BML2_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A2XA19|A2XA19_ORYSI Putative uncharacterized protein OS=Oryza... 69 2e-10
>tr|A7P8S8|A7P8S8_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036292001 PE=4 SV=1 Length = 623
Score = 77.4 bits (189), Expect = 3e-13 Identities = 35/78 (44%), Positives = 54/78 (69%) Frame = +2
Query: 17 EHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFTHAIE 196 EH C++DLL RAG+L++A+ + M C P+ VT+ T+L ACR +RN++L + IE Sbjct: 389 EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE 448
Query: 197 LDRGNAGTYLTLMNMYAD 250 L+ +AGTY+ L N+YA+ Sbjct: 449 LEPEDAGTYILLSNIYAN 466
>tr|Q6ZLQ1|Q6ZLQ1_ORYSJ Os07g0150000 protein OS=Oryza sativa subsp. japonica GN=OJ1027_G06.19 PE=4 SV=1 Length = 592
Score = 72.8 bits (177), Expect = 8e-12 Identities = 34/78 (43%), Positives = 50/78 (64%) Frame = +2
Query: 14 LEHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFTHAI 193 +EHL C+VDLL RAG++ +A MP PN V + T+L +C ++ LELG + + Sbjct: 357 IEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLV 416
Query: 194 ELDRGNAGTYLTLMNMYA 247 ELD G++G Y+ L N+YA Sbjct: 417 ELDPGHSGDYVLLSNLYA 434
>tr|B8B7B5|B8B7B5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24907 PE=4 SV=1 Length = 460
Score = 72.8 bits (177), Expect = 8e-12 Identities = 34/78 (43%), Positives = 50/78 (64%) Frame = +2
Query: 14 LEHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFTHAI 193 +EHL C+VDLL RAG++ +A MP PN V + T+L +C ++ LELG + + Sbjct: 357 IEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLV 416
Query: 194 ELDRGNAGTYLTLMNMYA 247 ELD G++G Y+ L N+YA Sbjct: 417 ELDPGHSGDYVLLSNLYA 434
>tr|A3BGL5|A3BGL5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_022187 PE=4 SV=1 Length = 1280
Score = 72.8 bits (177), Expect = 8e-12 Identities = 34/78 (43%), Positives = 50/78 (64%) Frame = +2
Query: 14 LEHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFTHAI 193 +EHL C+VDLL RAG++ +A MP PN V + T+L +C ++ LELG + + Sbjct: 1045 IEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLV 1104
Query: 194 ELDRGNAGTYLTLMNMYA 247 ELD G++G Y+ L N+YA Sbjct: 1105 ELDPGHSGDYVLLSNLYA 1122
>tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 Length = 868
Score = 72.4 bits (176), Expect = 1e-11 Identities = 32/77 (41%), Positives = 49/77 (63%) Frame = +2
Query: 17 EHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFTHAIE 196 +H C+VDLL RAG+L +A Q MPC P++ +H +L AC+ + N++L + H +E Sbjct: 634 QHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILE 693
Query: 197 LDRGNAGTYLTLMNMYA 247 L+ A Y+TL N+YA Sbjct: 694 LEPSYASVYITLSNIYA 710
>tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_211228 PE=4 SV=1 Length = 868
Score = 72.4 bits (176), Expect = 1e-11 Identities = 32/77 (41%), Positives = 49/77 (63%) Frame = +2
Query: 17 EHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFTHAIE 196 +H C+VDLL RAG+L +A Q MPC P++ +H +L AC+ + N++L + H +E Sbjct: 634 QHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILE 693
Query: 197 LDRGNAGTYLTLMNMYA 247 L+ A Y+TL N+YA Sbjct: 694 LEPSYASVYITLSNIYA 710
>tr|A7P9A6|A7P9A6_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036492001 PE=4 SV=1 Length = 595
Score = 72.0 bits (175), Expect = 1e-11 Identities = 33/81 (40%), Positives = 51/81 (62%) Frame = +2
Query: 5 IANLEHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFT 184 I NL+H C++D+L RAGQL+ A + MP P+ + T+L ACR + N++LG ++ Sbjct: 357 IPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQ 416
Query: 185 HAIELDRGNAGTYLTLMNMYA 247 E++ +AG Y+ L NMYA Sbjct: 417 KIFEMEPNDAGYYVLLSNMYA 437
>tr|A5AN69|A5AN69_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027622 PE=4 SV=1 Length = 697
Score = 72.0 bits (175), Expect = 1e-11 Identities = 33/81 (40%), Positives = 51/81 (62%) Frame = +2
Query: 5 IANLEHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFT 184 I NL+H C++D+L RAGQL+ A + MP P+ + T+L ACR + N++LG ++ Sbjct: 459 IPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQ 518
Query: 185 HAIELDRGNAGTYLTLMNMYA 247 E++ +AG Y+ L NMYA Sbjct: 519 KIFEMEPNDAGYYVLLSNMYA 539
>tr|A7QUT6|A7QUT6_VITVI Chromosome chr1 scaffold_180, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006973001 PE=4 SV=1 Length = 684
Score = 71.6 bits (174), Expect = 2e-11 Identities = 33/78 (42%), Positives = 53/78 (67%) Frame = +2
Query: 17 EHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFTHAIE 196 +H TC+VDLL RAG LN+A + + MP +P+ V + ++L+AC+ + N+E+G +E Sbjct: 524 DHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE 583
Query: 197 LDRGNAGTYLTLMNMYAD 250 +D N+G Y+ L NMYA+ Sbjct: 584 IDPWNSGPYVLLSNMYAE 601
>tr|A7PZB8|A7PZB8_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026821001 PE=4 SV=1 Length = 871
Score = 71.6 bits (174), Expect = 2e-11 Identities = 35/82 (42%), Positives = 51/82 (62%) Frame = +2
Query: 5 IANLEHLTCIVDLLSRAGQLNKAIAMTQWMPCHPNLVTFHTVLSACRRNRNLELGLQMFT 184 + EH C+VDLLSRAG+L++A+ + + MP P + +LSACR N+ELG Sbjct: 633 VPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAAN 692
Query: 185 HAIELDRGNAGTYLTLMNMYAD 250 +EL+ GN G+Y L N+YA+ Sbjct: 693 QLLELESGNDGSYTLLSNIYAN 714
|