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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919081
Clone id YMU001_000121_A08
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCAAGGGGGAGCGTGAGGGAAGGTCTCCTTTGCAAGCAAAAATAAGCCAGATCTTCGTC
CCCAAGCGACTATCAAAGAAGAAAGAGATAGTTGGTTGCCCCCTCCACGACAAAACCTAT
CTCCATAGCTTTTTGCAACCCCTCAACAAGGGATGCAACGCCTATAAAACCCAATGCACC
ACCCGCCGCAAGGTCGATATGGTTCTCTAGTAAAACCCTCCAATAGGGGCCCCCACCCAA
CAATAAGTTGTTGCAACTAGCTAGAGATGCACCTATGGTAGGCTTTGTGAGATCCCCACA
CAGGTGACACATAGATAAATGTTATAAACTTTATGGTTCTTCTTTGACATGTTAAAGTGC
ATTTTATGGTCACACTTTCTAAGCTTGCTCACTATATATATTAGTATGTGATTTGCGCAT
TGCTGCAGCCAAAGAAAATCCCCTCTCTCTCTCGCAGGTACTCGAGTACCTGCAGGTAAT
ATCTCAAGGGCGAATTCG
■■Homology search results ■■ -
sp_hit_id Q5ZJ07
Definition sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61 OS=Gallus gallus
Align length 70
Score (bit) 33.9
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919081|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_A08.
         (485 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61 O...    34   0.40 
sp|Q9UTH9|DUS3_SCHPO tRNA-dihydrouridine synthase 3 OS=Schizosac...    32   1.2  
sp|Q6ZUB1|CI079_HUMAN FAM75-like protein C9orf79 OS=Homo sapiens...    31   3.4  
sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthetase OS...    30   5.7  
sp|Q88SK6|Y3408_LACPL UPF0189 protein lp_3408 OS=Lactobacillus p...    30   7.5  
sp|P16733|GM_HCMVA Glycoprotein M OS=Human cytomegalovirus (stra...    30   7.5  
sp|Q9PT62|FZD4_XENLA Frizzled-4 OS=Xenopus laevis GN=fzd4 PE=2 SV=1    30   7.5  
sp|Q9QZH0|FZD4_RAT Frizzled-4 OS=Rattus norvegicus GN=Fzd4 PE=2 ...    30   7.5  
sp|Q9ULV1|FZD4_HUMAN Frizzled-4 OS=Homo sapiens GN=FZD4 PE=1 SV=2      30   7.5  
sp|Q9IA05|FZD4_CHICK Frizzled-4 OS=Gallus gallus GN=FZD4 PE=2 SV=1     30   7.5  
sp|Q10203|YBX5_SCHPO Uncharacterized protein C17D1.05 OS=Schizos...    29   9.8  
sp|A0AEZ5|ISPE_LISW6 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    29   9.8  
sp|Q9UKQ2|ADA28_HUMAN ADAM 28 OS=Homo sapiens GN=ADAM28 PE=2 SV=2      29   9.8  

>sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61
           OS=Gallus gallus GN=CCDC61 PE=2 SV=1
          Length = 403

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 16/70 (22%)
 Frame = +2

Query: 2   PRGSVREGLLCKQK*ARSSSPSDYQ----------------RRKR*LVAPSTTKPISIAF 133
           PRG+V  G  C+++  RSSS    Q                +R+R L  PST  P+S + 
Sbjct: 293 PRGTVSSGDNCRRRGRRSSSAESLQSRRSAQSSGSEADTCPQRRRGLGGPSTRSPLSASS 352

Query: 134 CNPSTRDATP 163
           CN ++  + P
Sbjct: 353 CNSTSVASHP 362


>sp|Q9UTH9|DUS3_SCHPO tRNA-dihydrouridine synthase 3
           OS=Schizosaccharomyces pombe GN=dus3 PE=2 SV=1
          Length = 617

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 303 LCGDLTKPTIGASLASCNNLLLGGGPYWRVL--LENHIDLAAGGALGFIGVASLVEGLQK 130
           LCG L   T  + +A C  L+ G  P W ++  L    ++  GG  G +GV      L +
Sbjct: 257 LCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGILGVQLATGKLWQ 316

Query: 129 AMEIGFVV 106
           A +   V+
Sbjct: 317 ATKTAQVI 324


>sp|Q6ZUB1|CI079_HUMAN FAM75-like protein C9orf79 OS=Homo sapiens
            GN=C9orf79 PE=2 SV=2
          Length = 1445

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 72   IKEERDSWLPPPRQNLSP*LFATPQQGMQRL*NPMHHPPQGRYGSLVKPSNRGPHPTI 245
            I++   SW PPPR+ +SP               P HH P+      +  ++ GPHP +
Sbjct: 1395 IRDRDSSWAPPPREPVSP-------------AGPHHHRPR------MASTSGGPHPQL 1433


>sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthetase
           OS=Gibberella fujikuroi GN=GGS PE=3 SV=1
          Length = 418

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 92  LVAPSTTKPISIAFCNPSTRDATPIKPNAPPAARSIWFSSKTL 220
           LV+P+   P + +   P++ +ATP KP   P     W S K L
Sbjct: 41  LVSPNAIPPRTSSTGIPTSLNATPTKPVLRPVPEGDWLSQKQL 83


>sp|Q88SK6|Y3408_LACPL UPF0189 protein lp_3408 OS=Lactobacillus
           plantarum GN=lp_3408 PE=3 SV=1
          Length = 172

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 297 GDLTKPTIGASLASCNNLLLGGGPYWRVLLENHIDLAAGGAL 172
           GD+TK T+ A + + N  LLGGG      ++  I  AAG AL
Sbjct: 9   GDITKMTVDAIVNAANTSLLGGGG-----VDGAIHRAAGPAL 45


>sp|P16733|GM_HCMVA Glycoprotein M OS=Human cytomegalovirus (strain
           AD169) GN=GM PE=1 SV=1
          Length = 372

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 344 LTC*SAFYGHTF*ACSLYILVCDLRIAAAKENPLSLSQ 457
           L C + F    F A ++Y LVC ++I+  K+  +SL+Q
Sbjct: 77  LVCYAVFMQLVFLAVTIYYLVCWIKISMRKDKGMSLNQ 114


>sp|Q9PT62|FZD4_XENLA Frizzled-4 OS=Xenopus laevis GN=fzd4 PE=2 SV=1
          Length = 523

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 202 PYRPCGGWCIGFYRRCIPC*GVAKSYG 122
           P  PCGG C+   RRC P   V K +G
Sbjct: 99  PIGPCGGMCLSVKRRCEP---VLKEFG 122


>sp|Q9QZH0|FZD4_RAT Frizzled-4 OS=Rattus norvegicus GN=Fzd4 PE=2
           SV=1
          Length = 538

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 202 PYRPCGGWCIGFYRRCIPC*GVAKSYG 122
           P  PCGG C+   RRC P   V K +G
Sbjct: 114 PIGPCGGMCLSVKRRCEP---VLKEFG 137


>sp|Q9ULV1|FZD4_HUMAN Frizzled-4 OS=Homo sapiens GN=FZD4 PE=1 SV=2
          Length = 537

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 202 PYRPCGGWCIGFYRRCIPC*GVAKSYG 122
           P  PCGG C+   RRC P   V K +G
Sbjct: 113 PIGPCGGMCLSVKRRCEP---VLKEFG 136


>sp|Q9IA05|FZD4_CHICK Frizzled-4 OS=Gallus gallus GN=FZD4 PE=2 SV=1
          Length = 525

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 202 PYRPCGGWCIGFYRRCIPC*GVAKSYG 122
           P  PCGG C+   RRC P   V K +G
Sbjct: 101 PIGPCGGMCLSVKRRCEP---VLKEFG 124
tr_hit_id Q9ZR47
Definition tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota
Align length 29
Score (bit) 37.0
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919081|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_A08.
         (485 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1    37   0.48 
tr|B8BWZ5|B8BWZ5_THAPS Predicted protein OS=Thalassiosira pseudo...    36   1.1  
tr|A8J6J3|A8J6J3_CHLRE Predicted protein (Fragment) OS=Chlamydom...    36   1.1  
tr|A6RTI0|A6RTI0_BOTFB Predicted protein OS=Botryotinia fuckelia...    36   1.1  
tr|Q39WD9|Q39WD9_GEOMG Putative uncharacterized protein OS=Geoba...    35   1.8  
tr|A2F4K2|A2F4K2_TRIVA Putative uncharacterized protein OS=Trich...    33   5.3  
tr|B5YMK9|B5YMK9_THAPS Predicted protein OS=Thalassiosira pseudo...    33   7.0  
tr|B6NTI8|B6NTI8_BRAFL Putative uncharacterized protein OS=Branc...    33   7.0  
tr|Q7RHP8|Q7RHP8_PLAYO Putative uncharacterized protein PY03936 ...    33   9.1  

>tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1
          Length = 675

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -1

Query: 380 RKCDHKMHFNMSKKNHKVYNIYLCVTCVG 294
           RKCDH+M  N+SKK  KVY +   V+C G
Sbjct: 32  RKCDHRMGTNLSKKQFKVYGLRGYVSCRG 60


>tr|B8BWZ5|B8BWZ5_THAPS Predicted protein OS=Thalassiosira pseudonana
            CCMP1335 GN=THAPSDRAFT_3158 PE=4 SV=1
          Length = 2271

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 297  GDLTKPTIGASLASCNNLLLGGGPYWRVLLENHIDLAAGGALG 169
            GD+  P  G  L  C  LLL G PY+R+LL N  ++  G   G
Sbjct: 914  GDVFLPHEGRPLLGCEKLLLQGIPYFRLLLGNETEVQLGDLAG 956


>tr|A8J6J3|A8J6J3_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_150517 PE=3
           SV=1
          Length = 1490

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/73 (32%), Positives = 32/73 (43%)
 Frame = -3

Query: 303 LCGDLTKPTIGASLASCNNLLLGGGPYWRVLLENHIDLAAGGALGFIGVASLVEGLQKAM 124
           LCG L  PT G SLA   +  LGGG    V + +H  L   G + + G+   V G  +  
Sbjct: 51  LCGQLIPPTAGPSLAGAASACLGGGEEGGVPVRSHGQLRQLGTVSYNGLP--VHGGGRGA 108

Query: 123 EIGFVVEGATNYL 85
              F V     Y+
Sbjct: 109 PAAFDVARVATYV 121


>tr|A6RTI0|A6RTI0_BOTFB Predicted protein OS=Botryotinia fuckeliana
            (strain B05.10) GN=BC1G_03916 PE=4 SV=1
          Length = 1081

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 92   LVAPSTTKPISIAFCNPSTRDATPIKPNAPPAARSI 199
            L +P TT P   AF N +T D  PI PN+P + RSI
Sbjct: 1011 LKSPQTTSP---AFLNTATEDTEPIPPNSPKSLRSI 1043


>tr|Q39WD9|Q39WD9_GEOMG Putative uncharacterized protein
           OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
           / DSM 7210) GN=Gmet_1198 PE=4 SV=1
          Length = 325

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 133 KSYGDRFCRGGGNQLSLSSLIVAWGRRSGLFLLAKETFPHAP 8
           + Y  + CRGGG       LI + G+R GL+  AKE  P +P
Sbjct: 168 QEYAGKDCRGGGKVEFAQKLISSEGKRDGLYWEAKEGEPESP 209


>tr|A2F4K2|A2F4K2_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_052060 PE=4 SV=1
          Length = 582

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 21  KVSFASKNKPDLRPQATIKEERDSWLPPPRQNLSP*LFATPQQGMQRL*NPMHHPPQGRY 200
           KV  A  NKP ++  A  K+   + +PPP Q   P      QQ   ++  P    PQ +Y
Sbjct: 436 KVIVAQPNKPMVKHIAAPKKTITTVVPPPPQQSQPMYSQIQQQPRNQIQQPQQQQPQMQY 495

Query: 201 GSLVKP 218
            +  +P
Sbjct: 496 QTQYQP 501


>tr|B5YMK9|B5YMK9_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPS_6825 PE=4 SV=1
          Length = 452

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 1   PKGEREGRSPLQAKISQIFVPKRLSKKKEIVGCPLHDKTYLHSFLQPLNKGCNAYKTQCT 180
           PKG  +G+   +  I    +     KKK +V     +K++++SF  P NKG + + +  T
Sbjct: 271 PKGFWDGKE--RKSIEMFNIQNTFDKKKVLVKSYSQNKSFMNSFSSPWNKGTSLWVSSMT 328

Query: 181 T 183
           T
Sbjct: 329 T 329


>tr|B6NTI8|B6NTI8_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_128818 PE=4 SV=1
          Length = 1500

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 99   PPPRQNLSP*LFATPQQGMQRL*NPMHHP--PQGRYGSLVKPSNRG--PHPTIS 248
            PP R   SP + + PQ        P HHP  PQG+YGS+ +  +R   PHP +S
Sbjct: 1162 PPHRMGSSPHMMS-PQV-------PYHHPHMPQGQYGSMPQGQDRPAVPHPGVS 1207


>tr|Q7RHP8|Q7RHP8_PLAYO Putative uncharacterized protein PY03936
           OS=Plasmodium yoelii yoelii GN=PY03936 PE=4 SV=1
          Length = 1554

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 383 LRKCDHKMHFNMSKKNHKVYNIYLCVTCVGISQSL 279
           L+K   KM FN+S +N+KV +I  CV+ + + + L
Sbjct: 607 LKKKKKKMFFNLSYRNNKVIDILKCVSMINLQKDL 641