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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919091
Clone id YMU001_000121_B06
Library
Length 265
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCGTTCAACCATTTCACTTTTGCAAATGTGGAAGAAGACATATGTACACTTTTTTGACGG
ATGTACAATTGACCATTTTGCTTTTGCAGATGGAGGAGAATGCACTGATAATTTCCAACA
GTTTCAGGTGGGGGAGGGAAGAGAGGGCCCAGTAACAACAACAAGATTGGGACTAAGCAG
GCCCTTTGGTTTGGGGGTTGAAATGTCCATCACTTTAGAGGACACAGGTACTTCCTTTGC
TAGCATGGCATCATACTGTTGGACC
■■Homology search results ■■ -
sp_hit_id A7HSL7
Definition sp|A7HSL7|SYL_PARL1 Leucyl-tRNA synthetase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
Align length 69
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919091|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_B06.
         (265 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7HSL7|SYL_PARL1 Leucyl-tRNA synthetase OS=Parvibaculum lavam...    32   1.3  
sp|A4VYA3|SYR_STRSY Arginyl-tRNA synthetase OS=Streptococcus sui...    31   1.7  
sp|A4W4J9|SYR_STRS2 Arginyl-tRNA synthetase OS=Streptococcus sui...    31   1.7  
sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=...    30   2.9  
sp|A5PHT0|Y1448_ARATH Uncharacterized protein At1g24485 OS=Arabi...    30   5.0  
sp|B1AXH1|NHSL2_MOUSE NHS-like protein 2 OS=Mus musculus GN=Nhsl...    29   6.5  
sp|Q68F67|DEN1A_XENLA DENN domain-containing protein 1A OS=Xenop...    29   6.5  
sp|Q9ZL98|Y745_HELPJ Uncharacterized RNA pseudouridine synthase ...    29   8.5  

>sp|A7HSL7|SYL_PARL1 Leucyl-tRNA synthetase OS=Parvibaculum
           lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
           GN=leuS PE=3 SV=1
          Length = 870

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -2

Query: 258 QYDAMLAKEVPVSSKVMDISTPKPKGLLSPN-----LVVVTGPSLPSPT*NCWKLSVHSP 94
           +++  +A+   +++ V   +   P+G  +       LV + GP +P     CW+   H  
Sbjct: 732 RFNRAVARVYELANAVSGFTPGTPEGAFAKREALEILVQIVGPMMPHIAEECWEALGHGE 791

Query: 93  PSAKAKWSI 67
           P   A+W +
Sbjct: 792 PLTAAEWPV 800


>sp|A4VYA3|SYR_STRSY Arginyl-tRNA synthetase OS=Streptococcus suis
           (strain 05ZYH33) GN=argS PE=3 SV=1
          Length = 562

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 41  YVHFF-DGCTIDHFAFADGGECTDNFQQFQVGEGREGPVTTTRLGLSRPFGLGVEMSITL 217
           YV+FF D   I H    D     D + +  +G+GR   +  +   +++PF +G   S  +
Sbjct: 78  YVNFFLDKAAISHQVLTDVITEKDQYGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVI 137

Query: 218 ED 223
            D
Sbjct: 138 GD 139


>sp|A4W4J9|SYR_STRS2 Arginyl-tRNA synthetase OS=Streptococcus suis
           (strain 98HAH33) GN=argS PE=3 SV=1
          Length = 562

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 41  YVHFF-DGCTIDHFAFADGGECTDNFQQFQVGEGREGPVTTTRLGLSRPFGLGVEMSITL 217
           YV+FF D   I H    D     D + +  +G+GR   +  +   +++PF +G   S  +
Sbjct: 78  YVNFFLDKAAISHQVLTDVITEKDQYGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVI 137

Query: 218 ED 223
            D
Sbjct: 138 GD 139


>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1
            SV=3
          Length = 5038

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -2

Query: 234  EVPVSSKVMDISTPKPKGL-----LSPNLVVVTGPSLPSPT*NCWKLSVHSPPSA 85
            E+PV+++    + PKP GL     +S NLV      LPSPT     LS HS  S+
Sbjct: 2421 EIPVTTQKTTDTCPKPTGLPLTSNMSLNLVTSADYKLPSPT---SPLSPHSNKSS 2472


>sp|A5PHT0|Y1448_ARATH Uncharacterized protein At1g24485
           OS=Arabidopsis thaliana GN=RWK1 PE=2 SV=2
          Length = 498

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 115 PTVSGGGGKRGPSNNNKIGTKQA 183
           P+  GGGGK G SNN   GT +A
Sbjct: 396 PSKGGGGGKSGGSNNGDGGTNKA 418


>sp|B1AXH1|NHSL2_MOUSE NHS-like protein 2 OS=Mus musculus GN=Nhsl2
           PE=2 SV=1
          Length = 854

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = -2

Query: 249 AMLAKEVPVSSKVMDISTP-KPKGLLSPNLVVVTGPSLPSPT*NCWKLSVH-SPPSAKAK 76
           A    ++ +  +  ++++P +P GL+SP+    +    P+PT +      H  PPSA  +
Sbjct: 318 ATTPSQLSIEVEAREVASPGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSASVR 377

Query: 75  WSIVHPSKKC----TYVFFHICKSEM 10
              V P +K     T     ICKS +
Sbjct: 378 VRPVVPERKSSLPPTSPMEKICKSRL 403


>sp|Q68F67|DEN1A_XENLA DENN domain-containing protein 1A OS=Xenopus
           laevis GN=dennd1a PE=2 SV=1
          Length = 1010

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 243 LAKEVPVSSKVMDISTPKPKGLLSPNLVVVTGPSLP 136
           + KEV ++S   +I+ P+P G  +P L +V  P  P
Sbjct: 668 IEKEVTIASSQGNITIPRPHGRKTPELGIVPPPPAP 703


>sp|Q9ZL98|Y745_HELPJ Uncharacterized RNA pseudouridine synthase
           jhp_0682 OS=Helicobacter pylori J99 GN=jhp_0682 PE=3
           SV=1
          Length = 327

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
 Frame = -2

Query: 171 PNLVVVTGPSLPSPT*NCWKLSVH---SPPSAKAKWSIVHPSKKCT--------YVFFHI 25
           PNLVV   PS+  PT   W  S +   S    K ++ IVH   K T          F H+
Sbjct: 94  PNLVVHKAPSVKEPTLVDWLKSQNYELSNLGLKERYGIVHRLDKDTSGGIVIAKNNFTHV 153

Query: 24  CKSEMVE 4
           C SE ++
Sbjct: 154 CLSEQLK 160
tr_hit_id B6KUN2
Definition tr|B6KUN2|B6KUN2_TOXGO Ribosomal protein L15, putative OS=Toxoplasma gondii ME49
Align length 60
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919091|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_B06.
         (265 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KUN2|B6KUN2_TOXGO Ribosomal protein L15, putative OS=Toxopl...    35   1.4  
tr|B6KUD5|B6KUD5_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.1  
tr|Q871G5|Q871G5_NEUCR Related to methionyl-tRNA formyltransfera...    33   9.2  
tr|Q7S7L3|Q7S7L3_NEUCR Predicted protein OS=Neurospora crassa GN...    33   9.2  

>tr|B6KUN2|B6KUN2_TOXGO Ribosomal protein L15, putative
           OS=Toxoplasma gondii ME49 GN=TGME49_020300 PE=4 SV=1
          Length = 1361

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 228 PVSSKVMDISTPKPKGLLSPNLVVVTGPS--LPSPT*NCWKLSVHSPPSAKAKWSIVHPS 55
           P S + +  S+P P   LSP    VT PS  +PSP+ +C   SV SPPS+ +      PS
Sbjct: 146 PSSVRSLFASSPLPDCFLSPLAPPVTIPSFFIPSPSSSCLASSVCSPPSSSSPSPSSSPS 205


>tr|B6KUD5|B6KUD5_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_080640 PE=4 SV=1
          Length = 5811

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +2

Query: 71   DHFAFADGGECTDNFQQFQVGEGREGPVTTTRLGLSRP 184
            + FAF +GGE  D  Q+ Q+G G  GP  +  LGLSRP
Sbjct: 5443 ESFAFPEGGELEDLTQRLQLG-GAPGPFVS--LGLSRP 5477


>tr|Q871G5|Q871G5_NEUCR Related to methionyl-tRNA formyltransferase,
           mitochondrial OS=Neurospora crassa GN=B7H23.160 PE=4
           SV=1
          Length = 454

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = -2

Query: 249 AMLAKEVPVSSKVMDISTPKPKGLLSPNLVVVTGPSLPSPT*NCWKLSVHSPPSAKA--K 76
           A L  ++ VSS    +  P P   +  N + +T P LPSP  N  K+  H+P   KA  +
Sbjct: 223 APLGADMLVSSLQKGLHVP-PLAPVIDNTIPIT-PPLPSPVEN--KMYTHAPKITKADQR 278

Query: 75  WSIVHPSKKCTYVFFHIC 22
           WSI+H S     +   +C
Sbjct: 279 WSILHHSAADAALRARVC 296


>tr|Q7S7L3|Q7S7L3_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU04313 PE=4 SV=1
          Length = 527

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = -2

Query: 249 AMLAKEVPVSSKVMDISTPKPKGLLSPNLVVVTGPSLPSPT*NCWKLSVHSPPSAKA--K 76
           A L  ++ VSS    +  P P   +  N + +T P LPSP  N  K+  H+P   KA  +
Sbjct: 241 APLGADMLVSSLQKGLHVP-PLAPVIDNTIPIT-PPLPSPVEN--KMYTHAPKITKADQR 296

Query: 75  WSIVHPSKKCTYVFFHIC 22
           WSI+H S     +   +C
Sbjct: 297 WSILHHSAADAALRARVC 314