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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919108
Clone id YMU001_000121_C11
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCTTGAGTTATGGATGATGGATGTATAGCCATTGTACATATGGTGAGTCTGGTATGAGT
TGGGTATGAGTCTTTGGTCTAGAGTCTAGTCGTTGCACACAGCATTCTCCCTGCACAGTC
CGAGCCTCGACACTCCCATTGTACCCTTGTGAGCACTTGGTCTAGAGCTGTGTGTGCTGC
CGGCCAGAGTCTGTAGCTGATAAATTAAGAGTAGTCGATGCTTACATTGGGCTTGGAGTC
TATCATGTCTTGCTATTTCGAGTACATTTCTGTTCTTTGTTGCATTTCAGTTGTCTAGTT
TGTGCCACGGAGTGAGGTTTCTTGCATACTGCACTTAAGAGCACCCACACTAGAGAGCAT
ATCATTGTTTTCCTGCTACACGTAGTACTTCCAGCGGTGAATAGTGGGTGGATCAAGCGA
AAGTTGAGTGCTCACGGGTGCCAAACTCTGCTTTCATTGTCGTCAAATGGGGCATCTAGC
GAAGGCCTGCCCTGGTCGTAGACCTCGCCCCCCTCC
■■Homology search results ■■ -
sp_hit_id P62690
Definition sp|P62690|GAK18_HUMAN HERV-K_22q11.23 provirus ancestral Gag polyprotein OS=Homo sapiens
Align length 23
Score (bit) 33.5
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919108|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_C11.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62690|GAK18_HUMAN HERV-K_22q11.23 provirus ancestral Gag pol...    33   0.60 
sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccha...    33   1.0  
sp|P03334|GAG_MSVMO Gag polyprotein OS=Moloney murine sarcoma vi...    32   2.3  
sp|Q9HDB9|GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polypr...    31   3.0  
sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c OS=Schizos...    31   3.9  
sp|P33818|VP4B_VARV Major core protein P4b OS=Variola virus GN=A...    31   4.0  
sp|P06440|VP4B_VACCW Major core protein P4b OS=Vaccinia virus (s...    31   4.0  
sp|P20643|VP4B_VACCC Major core protein P4b OS=Vaccinia virus (s...    31   4.0  
sp|Q7LDI9|GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polypr...    30   5.1  
sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein...    30   6.7  
sp|Q0R5R3|PRO_HTL32 Gag-Pro polyprotein OS=Human T-cell leukemia...    30   6.7  
sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leuk...    30   6.7  
sp|P04023|GAG_IPHA Retrovirus-related Gag polyprotein OS=Hamster...    30   6.7  
sp|Q0R5R4|GAG_HTL32 Gag polyprotein OS=Human T-cell leukemia vir...    30   6.7  
sp|Q3URY0|ZCH16_MOUSE Zinc finger CCHC domain-containing protein...    30   8.7  
sp|Q6ZR62|ZCH16_HUMAN Zinc finger CCHC domain-containing protein...    30   8.7  
sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti...    30   8.7  
sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1 OS=Cryp...    30   8.7  
sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE...    30   8.7  
sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE...    30   8.7  
sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces c...    30   8.7  
sp|P11269|GAG_MLVRD Gag polyprotein OS=Radiation murine leukemia...    30   8.7  
sp|P03332|GAG_MLVMO Gag polyprotein OS=Moloney murine leukemia v...    30   8.7  
sp|P21435|GAG_MLVHO Gag polyprotein OS=Hortulanus murine leukemi...    30   8.7  
sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia vi...    30   8.7  
sp|P29168|GAG_MLVDE Gag polyprotein OS=Murine leukemia virus (st...    30   8.7  
sp|P27460|GAG_MLVCB Gag polyprotein OS=Cas-Br-E murine leukemia ...    30   8.7  
sp|P29167|GAG_MLVBM Gag polyprotein OS=Murine leukemia virus (st...    30   8.7  
sp|P03336|GAG_MLVAV Gag polyprotein OS=AKV murine leukemia virus...    30   8.7  
sp|O74519|YCPD_SCHPO Uncharacterized N-acetyltransferase C663.13...    30   8.8  

>sp|P62690|GAK18_HUMAN HERV-K_22q11.23 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=3 SV=2
          Length = 623

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 428 VLTGAKLCFHCRQMGHLAKACPG 496
           V T  K C++C Q+GHL ++CPG
Sbjct: 586 VRTFGKKCYNCGQIGHLKRSCPG 608


>sp|O74555|BBP_SCHPO Branchpoint-bridging protein
           OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1
          Length = 587

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 446 LCFHCRQMGHLAKACPGRRPRPP 514
           +C HC  +GH+A+ CP R  +PP
Sbjct: 335 VCRHCGSIGHIARDCPVRDQQPP 357


>sp|P03334|GAG_MSVMO Gag polyprotein OS=Moloney murine sarcoma virus
           GN=gag PE=1 SV=3
          Length = 538

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 449 CFHCRQMGHLAKACPGRRPRPP 514
           C +C + GH AK CP RRPR P
Sbjct: 504 CTYCEEQGHWAKDCP-RRPRGP 524


>sp|Q9HDB9|GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag
           polyprotein OS=Homo sapiens GN=ERVK5 PE=1 SV=3
          Length = 667

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 428 VLTGAKLCFHCRQMGHLAKACP 493
           V T  K C++C Q+GHL ++CP
Sbjct: 538 VRTFGKKCYNCGQIGHLKRSCP 559


>sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c
           OS=Schizosaccharomyces pombe GN=SPAC683.02c PE=2 SV=1
          Length = 218

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 443 KLCFHCRQMGHLAKACP 493
           K CF CRQ GH+ + CP
Sbjct: 77  KFCFACRQQGHIVQDCP 93


>sp|P33818|VP4B_VARV Major core protein P4b OS=Variola virus GN=A3L
           PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/74 (21%), Positives = 39/74 (52%)
 Frame = +1

Query: 193 VADKLRVVDAYIGLGVYHVLLFRVHFCSLLHFSCLVCATE*GFLHTALKSTHTREHIIVF 372
           + D+L+ +D       +H+LL    F S+ HF+ +  + +  F++   ++ +    I++ 
Sbjct: 180 IGDQLKELDKIYSPSNHHILLSTTRFQSM-HFTDMSSSQDLSFIYRKPETNYYIHPILMA 238

Query: 373 LLHVVLPAVNSGWI 414
           L  + LPA+ + ++
Sbjct: 239 LFGIKLPALENAYV 252


>sp|P06440|VP4B_VACCW Major core protein P4b OS=Vaccinia virus
           (strain Western Reserve) GN=A3L PE=1 SV=1
          Length = 643

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/74 (21%), Positives = 39/74 (52%)
 Frame = +1

Query: 193 VADKLRVVDAYIGLGVYHVLLFRVHFCSLLHFSCLVCATE*GFLHTALKSTHTREHIIVF 372
           + D+L+ +D       +H+LL    F S+ HF+ +  + +  F++   ++ +    I++ 
Sbjct: 180 IGDQLKELDKIYSPSNHHILLSTTRFQSM-HFTDMSSSQDLSFIYRKPETNYYIHPILMA 238

Query: 373 LLHVVLPAVNSGWI 414
           L  + LPA+ + ++
Sbjct: 239 LFGIKLPALENAYV 252


>sp|P20643|VP4B_VACCC Major core protein P4b OS=Vaccinia virus
           (strain Copenhagen) GN=A3L PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/74 (21%), Positives = 39/74 (52%)
 Frame = +1

Query: 193 VADKLRVVDAYIGLGVYHVLLFRVHFCSLLHFSCLVCATE*GFLHTALKSTHTREHIIVF 372
           + D+L+ +D       +H+LL    F S+ HF+ +  + +  F++   ++ +    I++ 
Sbjct: 180 IGDQLKELDKIYSPSNHHILLSTTRFQSM-HFTDMSSSQDLSFIYRKPETNYYIHPILMA 238

Query: 373 LLHVVLPAVNSGWI 414
           L  + LPA+ + ++
Sbjct: 239 LFGIKLPALENAYV 252


>sp|Q7LDI9|GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag
           polyprotein OS=Homo sapiens GN=ERVK6 PE=1 SV=3
          Length = 666

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 401 IVGGSSES*VLTGAKLCFHCRQMGHLAKACP 493
           ++GG     V T  + C++C Q+GHL K CP
Sbjct: 534 VLGGQ----VRTFGRKCYNCGQIGHLKKNCP 560


>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9
           OS=Mus musculus GN=Zcchc9 PE=2 SV=1
          Length = 273

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 440 AKLCFHCRQMGHLAKACP 493
           A +CFHCRQ GH    CP
Sbjct: 127 AMVCFHCRQPGHGIADCP 144
tr_hit_id Q2QT18
Definition tr|Q2QT18|Q2QT18_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 36.6
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919108|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_C11.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QT18|Q2QT18_ORYSJ Retrotransposon protein, putative, Ty1-co...    37   0.75 
tr|Q45W62|Q45W62_PHACH Gag (Fragment) OS=Phanerochaete chrysospo...    36   0.98 
tr|Q76IM8|Q76IM8_FUGRU Gag-like protein OS=Fugu rubripes GN=ORF1...    35   1.7  
tr|B7G3B1|B7G3B1_PHATR Predicted protein OS=Phaeodactylum tricor...    35   2.2  
tr|B3VTC8|B3VTC8_SORBI Replication protein A1-like protein OS=So...    35   2.9  
tr|A8PHN4|A8PHN4_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.9  
tr|A8PBY7|A8PBY7_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.9  
tr|A8PAJ6|A8PAJ6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.9  
tr|A8NMX5|A8NMX5_COPC7 Putative uncharacterized protein OS=Copri...    35   2.9  
tr|A8NGE2|A8NGE2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.9  
tr|A8NAU6|A8NAU6_COPC7 Putative uncharacterized protein OS=Copri...    35   2.9  
tr|Q65XV7|Q65XV7_ORYSJ Os05g0111000 protein OS=Oryza sativa subs...    34   3.7  
tr|B8AWZ3|B8AWZ3_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.7  
tr|A5BE52|A5BE52_VITVI Putative uncharacterized protein OS=Vitis...    34   3.7  
tr|A3AZ85|A3AZ85_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.7  
tr|Q9GRG8|Q9GRG8_9TRYP CCHC zinc finger protein OS=Trypanosoma b...    34   3.7  
tr|Q38B00|Q38B00_9TRYP Universal minicircle sequence binding pro...    34   3.7  
tr|Q38AZ9|Q38AZ9_9TRYP Universal minicircle sequence binding pro...    34   3.7  
tr|B8MTS2|B8MTS2_9EURO Putative uncharacterized protein OS=Talar...    34   4.9  
tr|A7EDF0|A7EDF0_SCLS1 Putative uncharacterized protein OS=Scler...    34   4.9  
tr|Q70IH3|Q70IH3_SIVCZ Gag polyprotein OS=Simian immunodeficienc...    30   5.4  
tr|A5B4I5|A5B4I5_VITVI Putative uncharacterized protein OS=Vitis...    33   6.4  
tr|Q95V86|Q95V86_TRYCR Zinc finger protein PDZ5 (Universal minic...    33   6.4  
tr|Q68VM7|Q68VM7_TRYCR Nucleic acid binding protein (Universal m...    33   6.4  
tr|Q4D8U5|Q4D8U5_TRYCR Universal minicircle sequence binding pro...    33   6.4  
tr|Q4D6T8|Q4D6T8_TRYCR Universal minicircle sequence binding pro...    33   6.4  
tr|Q3ZMB9|Q3ZMB9_TRYCR Zinc finger protein 7 (Fragment) OS=Trypa...    33   6.4  
tr|P90606|P90606_TRYEQ Nucleic acid binding protein OS=Trypanoso...    33   6.4  
tr|O77233|O77233_TRYCR Poly-zinc finger protein 1 OS=Trypanosoma...    33   6.4  
tr|B0XJJ9|B0XJJ9_CULQU Predicted protein OS=Culex quinquefasciat...    33   6.4  

>tr|Q2QT18|Q2QT18_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g22170 PE=4 SV=1
          Length = 851

 Score = 36.6 bits (83), Expect = 0.75
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 428 VLTGAKLCFHCRQMGHLAKACPGRRP 505
           V +  K CF CR++GHL   CPG +P
Sbjct: 147 VKSNGKYCFKCREVGHLVNDCPGGKP 172


>tr|Q45W62|Q45W62_PHACH Gag (Fragment) OS=Phanerochaete
           chrysosporium RP-78 GN=gag PE=4 SV=1
          Length = 973

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
 Frame = +2

Query: 431 LTGAKLCFHCRQMGHLAKACP-------GRRPRPP 514
           L  A  CFHCR+ GHLA+ CP        RR  PP
Sbjct: 510 LRAAGKCFHCREAGHLARNCPKVNHAVSDRRGHPP 544


>tr|Q76IM8|Q76IM8_FUGRU Gag-like protein OS=Fugu rubripes GN=ORF1
           PE=4 SV=1
          Length = 479

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 428 VLTGAKLCFHCRQMGHLAKACPGR 499
           +   A  CF+CR+ GHLA+ACP R
Sbjct: 123 LFASALKCFNCREEGHLARACPSR 146


>tr|B7G3B1|B7G3B1_PHATR Predicted protein OS=Phaeodactylum tricornutum
            CCAP 1055/1 GN=PHATRDRAFT_47417 PE=4 SV=1
          Length = 1009

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 407  GGSSES*VLTGAKLCFHCRQMGHLAKACPGR 499
            GG +E+        CFHC Q GH A +CP R
Sbjct: 979  GGGTETGQGGAGNTCFHCGQPGHFANSCPNR 1009


>tr|B3VTC8|B3VTC8_SORBI Replication protein A1-like protein
           OS=Sorghum bicolor PE=4 SV=1
          Length = 933

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 434 TGAKLCFHCRQMGHLAKACPGRRPRP 511
           TG + CF C Q+GH A +CP   P P
Sbjct: 864 TGPRPCFKCNQIGHFADSCPLLAPAP 889


>tr|A8PHN4|A8PHN4_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_12680 PE=4
           SV=1
          Length = 324

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 449 CFHCRQMGHLAKACPGRR 502
           CF+CR+ GH+AK CP +R
Sbjct: 250 CFYCREQGHIAKECPKKR 267


>tr|A8PBY7|A8PBY7_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_10954 PE=4
           SV=1
          Length = 277

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 449 CFHCRQMGHLAKACPGRR 502
           CF+CR+ GH+AK CP +R
Sbjct: 203 CFYCREQGHIAKECPKKR 220


>tr|A8PAJ6|A8PAJ6_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_10379 PE=4
           SV=1
          Length = 324

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 449 CFHCRQMGHLAKACPGRR 502
           CF+CR+ GH+AK CP +R
Sbjct: 250 CFYCREQGHIAKECPKKR 267


>tr|A8NMX5|A8NMX5_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_13491 PE=4 SV=1
          Length = 884

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 449 CFHCRQMGHLAKACPGRR 502
           CF+CR+ GH+AK CP +R
Sbjct: 250 CFYCREQGHIAKECPKKR 267


>tr|A8NGE2|A8NGE2_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_13003 PE=4
           SV=1
          Length = 310

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 449 CFHCRQMGHLAKACPGRR 502
           CF+CR+ GH+AK CP +R
Sbjct: 236 CFYCREQGHIAKECPKKR 253