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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919109
Clone id YMU001_000121_C12
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGGACCTCAATCCCAATTTCACTGCTTCAGCGCCCCCCACAGCTATCTTACAACGGATCA
TTTCCTTTAGCCCCTCCCTCATCAGATGCTCCCACAAAGTACCTTATGAGGGGGCAGCTC
CCTTCCGTCCAAATGAAGAAGCTGCTCTACTTACAACAATATGCAGATCTCTTCTTCGAG
TTTCTCTTTGCAACCGGTGTCGTCCTAGCCGTGCCTTCCCTGGTTTTTTCTTGAGTCTTT
TTTGGTTTCTGAGTTCCTTTTCCGCTGTTTTGTTGTTTGCTTCCGATTTGTCTTCGTGTC
TATCCTCTCTTCATTATTCCTCTCATGACCTTTGTATATAACCCTCATGCGTGTGCGTTC
ATCCAATGCCTTCTCTCATGTCAATTTTTTTTTCCACCTTCTATTGCCTCTTTTTTGTGT
ACATGCTTCTCTGTCATCTAATCCTTTTTGAATCCTCTCTATTGCCAATTCCATTTGCTC
GTTTTCTCTTCTTTCTCATGTTATGACTTGTCTTTGGAGGGTCTCCACTCCTACAACCAC
CATATTTTTTGGATGA
■■Homology search results ■■ -
sp_hit_id Q1E1H4
Definition sp|Q1E1H4|NST1_COCIM Stress response protein NST1 OS=Coccidioides immitis
Align length 72
Score (bit) 36.2
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919109|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_C12.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1E1H4|NST1_COCIM Stress response protein NST1 OS=Coccidioide...    36   0.012
sp|Q5B3C8|NST1_EMENI Stress response protein nst1 OS=Emericella ...    29   0.25 
sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19 OS=...    33   0.93 
sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19 O...    33   0.93 
sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain...    32   1.6  
sp|A8GNR5|HEM3_RICAH Porphobilinogen deaminase OS=Rickettsia aka...    30   6.0  
sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus...    30   6.1  
sp|B0RDZ5|ISPG_CLAMS 4-hydroxy-3-methylbut-2-en-1-yl diphosphate...    30   6.1  
sp|A5CT01|ISPG_CLAM3 4-hydroxy-3-methylbut-2-en-1-yl diphosphate...    30   6.1  
sp|Q5RJP9|S12IP_RAT Protein SFRS12IP1 OS=Rattus norvegicus GN=Sf...    30   8.0  

>sp|Q1E1H4|NST1_COCIM Stress response protein NST1 OS=Coccidioides
           immitis GN=NST1 PE=3 SV=1
          Length = 1227

 Score = 36.2 bits (82), Expect(2) = 0.012
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -2

Query: 519 LQRQVIT*ERRENEQMELAIERIQKGLDDREACTQKRGNRRWKKKLT*EKALDERTRMRV 340
           LQ+Q    ER + E    A E  QK L+++    Q+R     +KK   EK   E  R R 
Sbjct: 538 LQKQAKEEERAKREAERAAEEAAQKALEEKRLEEQRRKKEEQRKKREAEKKAQEEERQRK 597

Query: 339 IYKGHERNNEER 304
             +  +R  EER
Sbjct: 598 EAERQKRLKEER 609



 Score = 21.2 bits (43), Expect(2) = 0.012
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 289 KSEANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRR 170
           + EA  +  E++   ++ L++K  K +  R R +RE + R
Sbjct: 630 REEAKKREREEKEAKERELREK--KIKEERERREREEKAR 667


>sp|Q5B3C8|NST1_EMENI Stress response protein nst1 OS=Emericella
           nidulans GN=nst1 PE=3 SV=1
          Length = 1125

 Score = 28.9 bits (63), Expect(2) = 0.25
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -2

Query: 495 ERRENEQMELAIERIQKGLDDREACTQKRGNRRWKKKLT*EKALDERTRMRVIYKGHERN 316
           E+   E  + A E   K   +R+   Q++     +KK   E+   E  R R   + H+R 
Sbjct: 509 EKARREAQKAAEEAAAKAEQERKLEEQRKKKEEQRKKREAERKAQEEERARKEAEKHKRL 568

Query: 315 NEER 304
            EER
Sbjct: 569 REER 572



 Score = 23.9 bits (50), Expect(2) = 0.25
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 289 KSEANNKTAE-KELRNQKRLKKKPGKARLGRHRLQRE 182
           + EA  K  E +ELR QK  +++  KA+  + R +RE
Sbjct: 593 REEAKRKEREERELREQKAKQERERKAQDEQSRRERE 629


>sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19
            OS=Rattus norvegicus GN=Scaf1 PE=1 SV=2
          Length = 1258

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 311  KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSAYCC 153
            K+   + + G+K+    KG  KP KT++K R G + T      + KK  A  C
Sbjct: 847  KKTKAKAKAGAKKAKGTKGKTKPSKTRKKVRSGGSSTASGGPGSLKKSKADSC 899


>sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19 OS=Mus
            musculus GN=Scaf1 PE=1 SV=1
          Length = 1256

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 311  KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSAYCC 153
            K+   + + G+K+    KG  KP KT++K R G + T      + KK  A  C
Sbjct: 845  KKTKAKAKAGAKKAKGTKGKTKPSKTRKKVRSGGSSTASGGPGSLKKSKADSC 897


>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain
            protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1
          Length = 2130

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -1

Query: 283  EANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRA 143
            EA  +  EKE+R Q+ +  K     L RHRL  E  RR  H+++ +A
Sbjct: 896  EAEKRIKEKEMRRQQAVLLK--HQELERHRLDMERERRRQHMMLMKA 940


>sp|A8GNR5|HEM3_RICAH Porphobilinogen deaminase OS=Rickettsia akari
           (strain Hartford) GN=hemC PE=3 SV=1
          Length = 301

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +3

Query: 48  LQRIISFSPS---LIRCSHKVPYEG----AAPFRPNEEAALLTTICRSLLRVSLCNRCRP 206
           L+R+ +F+P    LI  SH +P  G    A   R N+ + L   IC  +  +  C   +P
Sbjct: 173 LKRLGAFNPEYCHLIEYSHMLPCVGQGVIAVEIRQNDNSML--EICNQINHLPTCELIKP 230

Query: 207 SRAF 218
            RAF
Sbjct: 231 ERAF 234


>sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=nst1 PE=3 SV=1
          Length = 1201

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 24/102 (23%), Positives = 42/102 (41%)
 Frame = -2

Query: 519 LQRQVIT*ERRENEQMELAIERIQKGLDDREACTQKRGNRRWKKKLT*EKALDERTRMRV 340
           LQ+Q    E+   E  + A E   K   +++   Q+R     KKK   E+   E  R+R 
Sbjct: 560 LQKQAKEEEKARREAEKAAEEAAAKAEQEKKLEEQRRKREEQKKKREAERKAQEAERLRK 619

Query: 339 IYKGHERNNEERIDXXXXXXXXXXXXXXNSETKKDSRKNQGR 214
             +  +R  EER                  + ++++R+N+ R
Sbjct: 620 EAEKQKRLREERERQAEIERKQREQKELEKKRREEARQNELR 661


>sp|B0RDZ5|ISPG_CLAMS 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
           synthase OS=Clavibacter michiganensis subsp. sepedonicus
           (strain ATCC 33113 / JCM 9667) GN=ispG PE=3 SV=1
          Length = 381

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = -1

Query: 199 HRLQRETRRRDLHIVVSRAASSFGRKGAAPS*GTLWEHLMREGLKEMIRCKIAVGGAEAV 20
           +RL  E     LH+ V+ A  +F  +G   S  T +  L+ EG+ + IR  ++   AE V
Sbjct: 202 YRLLAERGDWPLHLGVTEAGPAF--QGTIKS-ATAFGILLSEGIGDTIRVSLSAPPAEEV 258

Query: 19  KLGLR 5
           K+GL+
Sbjct: 259 KVGLQ 263


>sp|A5CT01|ISPG_CLAM3 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
           synthase OS=Clavibacter michiganensis subsp.
           michiganensis (strain NCPPB 382) GN=ispG PE=3 SV=1
          Length = 381

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = -1

Query: 199 HRLQRETRRRDLHIVVSRAASSFGRKGAAPS*GTLWEHLMREGLKEMIRCKIAVGGAEAV 20
           +RL  E     LH+ V+ A  +F  +G   S  T +  L+ EG+ + IR  ++   AE V
Sbjct: 202 YRLLAERGDWPLHLGVTEAGPAF--QGTIKS-ATAFGILLSEGIGDTIRVSLSAPPAEEV 258

Query: 19  KLGLR 5
           K+GL+
Sbjct: 259 KVGLQ 263


>sp|Q5RJP9|S12IP_RAT Protein SFRS12IP1 OS=Rattus norvegicus
           GN=Sfrs12ip1 PE=2 SV=1
          Length = 153

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 499 MRKKRKRANGIGNREDSKRIR*QRSMYTKKRQ*KVEKKIDMREG 368
           ++KKRKR+N     EDS +   Q+    +K++ K EKK   ++G
Sbjct: 87  LKKKRKRSNSSTTEEDSSK---QKKQKYQKKEKKKEKKNKSKKG 127
tr_hit_id B8J1Q7
Definition tr|B8J1Q7|B8J1Q7_DESDE NLP/P60 protein OS=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Align length 61
Score (bit) 37.0
E-value 0.72
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919109|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_C12.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8J1Q7|B8J1Q7_DESDE NLP/P60 protein OS=Desulfovibrio desulfur...    37   0.72 
tr|Q384Y2|Q384Y2_9TRYP Putative uncharacterized protein OS=Trypa...    37   0.94 
tr|A2AUY3|A2AUY3_MOUSE Bromodomain adjacent to zinc finger domai...    36   1.2  
tr|A6R1R1|A6R1R1_AJECN Putative uncharacterized protein OS=Ajell...    36   1.6  
tr|Q22GW0|Q22GW0_TETTH Protein kinase domain containing protein ...    35   2.7  
tr|B3KZ60|B3KZ60_PLAKH Sin3 associated polypeptide p18-like prot...    35   2.7  
tr|Q4XMB8|Q4XMB8_PLACH Putative uncharacterized protein (Fragmen...    34   4.6  
tr|B4MAN1|B4MAN1_DROVI GJ15944 OS=Drosophila virilis GN=GJ15944 ...    34   4.6  
tr|A7EEH3|A7EEH3_SCLS1 Putative uncharacterized protein OS=Scler...    34   4.6  
tr|Q8BWF5|Q8BWF5_MOUSE Hedgehog acyltransferase (Fragment) OS=Mu...    33   7.8  
tr|Q6IIU2|Q6IIU2_DROME HDC17098 OS=Drosophila melanogaster GN=HD...    33   7.8  
tr|Q4SXP6|Q4SXP6_TETNG Chromosome 6 SCAF12355, whole genome shot...    33   7.9  
tr|B4P2W2|B4P2W2_DROYA GE16990 OS=Drosophila yakuba GN=GE16990 P...    33   7.9  

>tr|B8J1Q7|B8J1Q7_DESDE NLP/P60 protein OS=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           GN=Ddes_1768 PE=3 SV=1
          Length = 325

 Score = 37.0 bits (84), Expect = 0.72
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = -1

Query: 289 KSEANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRAASSFGRKGAAP 110
           +S  ++ T EK +R   R KKKP K+R    R  + T  R+     +   +S  RKGAAP
Sbjct: 186 ESRLSDFTEEKVIRELARDKKKPAKSRAAATRDNKRTNTREKKRDATIQVASNDRKGAAP 245

Query: 109 S 107
           +
Sbjct: 246 A 246


>tr|Q384Y2|Q384Y2_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb11.02.4710 PE=4 SV=1
          Length = 177

 Score = 36.6 bits (83), Expect = 0.94
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 310 FIIPLMTFVYNPHACAFIQCL---LSCQFFFPPSIASFLCTCFSVI*SFLNPLYCQFHLL 480
           F  PL  FV++P + ++I CL    S  FFFP +I SF+  CF  +  F   L C     
Sbjct: 11  FCFPLHLFVFSPLS-SYISCLHTFFSWLFFFPFTI-SFVFCCFCCLLLFFLSLLCFLFFE 68

Query: 481 VFSSF 495
           VF SF
Sbjct: 69  VFFSF 73


>tr|A2AUY3|A2AUY3_MOUSE Bromodomain adjacent to zinc finger domain,
           2B (Fragment) OS=Mus musculus GN=Baz2b PE=4 SV=1
          Length = 296

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -1

Query: 283 EANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRA 143
           EA  +T EKELR Q+ +  K     L RHRL  E  RR  H+++ +A
Sbjct: 133 EAEKRTKEKELRRQQAVLLK--HQELERHRLDMERERRRQHVMLMKA 177


>tr|A6R1R1|A6R1R1_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_03569 PE=4 SV=1
          Length = 1046

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 283 EANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRR 170
           E N K AE+E  N+KR + K  + RL R R++RE   R
Sbjct: 802 EKNRKAAEREFENKKRQRIKEVQERLRRERMEREEEER 839


>tr|Q22GW0|Q22GW0_TETTH Protein kinase domain containing protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00655960 PE=4
            SV=1
          Length = 2818

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 296  RRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSA 162
            RRQ+ SK+Q   K  +K  + Q K +E  ++  P+ +RN  +RS+
Sbjct: 1893 RRQLNSKRQIKKKKDEKSNQNQIKAQESKSQLNPIPQRNLMRRSS 1937


>tr|B3KZ60|B3KZ60_PLAKH Sin3 associated polypeptide p18-like
           protein,putative OS=Plasmodium knowlesi (strain H)
           GN=PKH_010960 PE=4 SV=1
          Length = 748

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 23/87 (26%), Positives = 41/87 (47%)
 Frame = -1

Query: 271 KTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRAASSFGRKGAAPS*GTLW 92
           KT+ ++ + +K+ +K+    R+ RH+ + E RRR       R+AS   R     S  +L+
Sbjct: 85  KTSNRKRKREKKTEKESSSHRMRRHKDRGEKRRRRTDHSHYRSASDISRNSHDRSGESLY 144

Query: 91  EHLMREGLKEMIRCKIAVGGAEAVKLG 11
            H  RE  +   + +I   G    + G
Sbjct: 145 SHHSRERKERKRKKEIKKKGKHRFRSG 171


>tr|Q4XMB8|Q4XMB8_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC108904.00.0 PE=4 SV=1
          Length = 285

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 29/115 (25%), Positives = 52/115 (45%)
 Frame = -1

Query: 514 KTSHNMRKKRKRANGIGNREDSKRIR*QRSMYTKKRQ*KVEKKIDMREGIG*THTHEGYI 335
           K     +K++KR      R+  KR + Q+    KKRQ K++KK   R+        +  +
Sbjct: 135 KRKKRQKKRQKRKKKKQKRKKKKRKKRQKKR--KKRQKKMQKKQKKRQ-----KRQKKKM 187

Query: 334 QRS*XXXXXXXXXXDKSEANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRR 170
           Q+             + +   K  +K+ + QKR KKK  K +  R + Q++ ++R
Sbjct: 188 QKK---------QKKRKKRQKKMQKKQKKRQKRQKKKRKKGQKKRQKRQKKMQKR 233


>tr|B4MAN1|B4MAN1_DROVI GJ15944 OS=Drosophila virilis GN=GJ15944
           PE=4 SV=1
          Length = 1343

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -2

Query: 516 QRQVIT*ERRENEQMELAIERIQKGLD-DREACTQKRGNRRWKKKLT*EKALDERTRMRV 340
           +R+++  ERR+ +Q    +ER+Q+  + +R+   +  G +R +++L  E+   ++ R   
Sbjct: 381 ERKMLEIERRKEQQR---VERMQRERERERQRAREAEGKQRKEQRLVLERQRKQKEREEQ 437

Query: 339 IYKGHERNNEERI 301
           + + HE+   ERI
Sbjct: 438 LIRVHEQREHERI 450


>tr|A7EEH3|A7EEH3_SCLS1 Putative uncharacterized protein
            OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
            Ss-1) GN=SS1G_03713 PE=4 SV=1
          Length = 1379

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -2

Query: 483  NEQMELAIERIQKGLDDR----EACTQKRGNRRWKKKLT*EKALDERTRMRVIYKGHERN 316
            +E++E   ER+ KG+D+R    +    KR N R+ +     + +DER   RV  + +ER 
Sbjct: 1257 DERVERVDERVDKGVDERVERVDERVDKRANERFDESA--NERVDERANERVNERSNERV 1314

Query: 315  NE 310
            NE
Sbjct: 1315 NE 1316


>tr|Q8BWF5|Q8BWF5_MOUSE Hedgehog acyltransferase (Fragment) OS=Mus
           musculus GN=Hhat PE=2 SV=1
          Length = 367

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -3

Query: 299 TRRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTP-VAKRNSKKRSAYCCK----*SSFF 135
           TR+Q   K+Q   K   K +K QE+ RE      P +A +N     ++C +     SSFF
Sbjct: 217 TRKQEREKEQEQEKQESKNEKKQEQEREKELVARPQLASKNDATAGSFCTRLFSPVSSFF 276

Query: 134 IWTEGSCPL 108
           I  + + PL
Sbjct: 277 ISPDNNNPL 285