BP919116 |
Clone id |
YMU001_000121_D08 |
Library |
YMU01 |
Length |
509 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000121_D08. |
Accession |
BP919116 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL883Contig1 |
Sequence |
GGCTTGGTTCTTCTTGTAACCACTCAGAAGGAAGGGGCGGTCACAGGAGGCCCGGAGTTT ATTAAAGCAGTTGGGGACAAGGTGTTGGAAGGTGTCCTAGCAGAGAATCTGCCAGTCTTG GCTACTGATGAGAAGTACAACGAGGCTTTCTACACTGCTGCAAAGAGGCTTGTCACAGCT ATAGATGGGCTCCCAGATATTGAAGGCCCCAAGTTCGAAGAGAATAAGCGAGAATCCAAT TTTAAGACCAGAGAGGAGACGGCGGAAAAGCGAGGACAGTTCTCTCTCGTGGTTGGTGGG TTGCTTGTCATTGCTTTCGTGGTGCCAATGGCTCAATATTATGCGTATGTATCCAAGAAG TAGGCCTACGACTCTGAGACTTCTCAAGGTGTTTTAGCTATTGAGATGTTATCAGGATGG CTTCGGTTGCTCCAAAGGTGTGCCCGCGTTGTATTCCTGCAGCTATGCTTTACCACAGTA GTCAGTCACCCTATATTTTTCTATCAAGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6ATY4 |
Definition |
sp|Q6ATY4|U603_ORYSJ UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica |
Align length |
120 |
Score (bit) |
196.0 |
E-value |
7.0e-50 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919116|Adiantum capillus-veneris mRNA, clone: YMU001_000121_D08. (509 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6ATY4|U603_ORYSJ UPF0603 protein Os05g0401100, chloroplastic... 196 7e-50 sp|A2Y4G9|U603_ORYSI UPF0603 protein OsI_019212, chloroplastic O... 196 7e-50 sp|Q9ZVL6|U603_ARATH UPF0603 protein At1g54780, chloroplastic OS... 185 9e-47 sp|Q5JJC8|SRP54_PYRKO Signal recognition 54 kDa protein OS=Pyroc... 38 0.032 sp|P44289|Y1680_HAEIN Uncharacterized protein HI1680 OS=Haemophi... 36 0.12 sp|Q8U070|SRP54_PYRFU Signal recognition 54 kDa protein OS=Pyroc... 34 0.46 sp|Q555D2|Y6503_DICDI Uncharacterized protein DDB_G0274915 OS=Di... 33 0.59 sp|Q15R45|TIG_PSEA6 Trigger factor OS=Pseudoalteromonas atlantic... 32 2.3 sp|A2QMB8|ROT1_ASPNC Protein rot1 OS=Aspergillus niger (strain C... 32 2.3 sp|Q5QXN7|TIG_IDILO Trigger factor OS=Idiomarina loihiensis GN=t... 31 2.9 sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=M... 31 2.9 sp|A0KS32|ILVD_SHESA Dihydroxy-acid dehydratase OS=Shewanella sp... 31 2.9 sp|A1DCU0|ROT1_NEOFI Protein rot1 OS=Neosartorya fischeri (strai... 31 3.9 sp|A9L621|ILVD_SHEB9 Dihydroxy-acid dehydratase OS=Shewanella ba... 31 3.9 sp|A3D9T2|ILVD_SHEB5 Dihydroxy-acid dehydratase OS=Shewanella ba... 31 3.9 sp|Q95J53|BTBDG_MACFA BTB/POZ domain-containing protein 16 OS=Ma... 31 3.9 sp|A6WTI9|ILVD_SHEB8 Dihydroxy-acid dehydratase OS=Shewanella ba... 30 5.0 sp|P11569|HGDA_ACIFE (R)-2-hydroxyglutaryl-CoA dehydratase subun... 30 5.0 sp|P35206|CSG2_YEAST Mannosyl phosphorylinositol ceramide syntha... 30 5.0 sp|Q5M8S7|NIPA_XENTR NIPA-like protein OS=Xenopus tropicalis GN=... 30 6.6 sp|Q0HQG3|ILVD_SHESR Dihydroxy-acid dehydratase OS=Shewanella sp... 30 6.6 sp|Q09550|YQU3_CAEEL Uncharacterized protein F26C11.3 OS=Caenorh... 30 8.6 sp|A8IGY0|DNLJ_AZOC5 DNA ligase OS=Azorhizobium caulinodans (str... 30 8.6
>sp|Q6ATY4|U603_ORYSJ UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1 Length = 299
Score = 196 bits (497), Expect = 7e-50 Identities = 93/120 (77%), Positives = 109/120 (90%) Frame = +1
Query: 1 GLVLLVTTQKEGAVTGGPEFIKAVGDKVLEGVLAENLPVLATDEKYNEAFYTAAKRLVTA 180 G+V+LVT+QKEGA+TGGP F++AVGD++L+ ++ENLPVLATDEKYNEA YT AKRL A Sbjct: 180 GIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAA 239
Query: 181 IDGLPDIEGPKFEENKRESNFKTREETAEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 360 IDGLPD GP F++NKRESNFKT+EET EKRGQF+LVVGGLLVIAFVVPMAQYYAY+SKK Sbjct: 240 IDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299
>sp|A2Y4G9|U603_ORYSI UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_019212 PE=3 SV=2 Length = 299
Score = 196 bits (497), Expect = 7e-50 Identities = 93/120 (77%), Positives = 109/120 (90%) Frame = +1
Query: 1 GLVLLVTTQKEGAVTGGPEFIKAVGDKVLEGVLAENLPVLATDEKYNEAFYTAAKRLVTA 180 G+V+LVT+QKEGA+TGGP F++AVGD++L+ ++ENLPVLATDEKYNEA YT AKRL A Sbjct: 180 GIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAA 239
Query: 181 IDGLPDIEGPKFEENKRESNFKTREETAEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 360 IDGLPD GP F++NKRESNFKT+EET EKRGQF+LVVGGLLVIAFVVPMAQYYAY+SKK Sbjct: 240 IDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299
>sp|Q9ZVL6|U603_ARATH UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1 Length = 285
Score = 185 bits (470), Expect = 9e-47 Identities = 89/120 (74%), Positives = 108/120 (90%) Frame = +1
Query: 1 GLVLLVTTQKEGAVTGGPEFIKAVGDKVLEGVLAENLPVLATDEKYNEAFYTAAKRLVTA 180 G+V+L+T+QKEGA+TGGP FI+AVG+ +L+ ++ENLPVLATDEKYNEA Y++AKRLV A Sbjct: 166 GIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAA 225
Query: 181 IDGLPDIEGPKFEENKRESNFKTREETAEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 360 IDG PD GP +++KRESNFKT+EET EKRGQFSLVVGGLLVIAFVVPMAQY+AYVS+K Sbjct: 226 IDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285
>sp|Q5JJC8|SRP54_PYRKO Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1 Length = 448
Score = 37.7 bits (86), Expect = 0.032 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Frame = +1
Query: 13 LVTTQKEGAVTGGPEFIKAVGDKVLEGVLAENLPV--LATDEKYNEAFYTAAKRLVTAID 186 ++ T+ +G+ GG L V A P+ + T E+ ++ KR V+ + Sbjct: 244 IIVTKLDGSAKGGG---------ALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLL 294
Query: 187 GLPDIEG--PKFEENKRESNFKTREETAEK--RGQFSL 288 GL DI+G K EE ++E F REE EK RG+F+L Sbjct: 295 GLGDIQGLLEKIEELQKEQEF--REEDMEKFLRGKFNL 330
>sp|P44289|Y1680_HAEIN Uncharacterized protein HI1680 OS=Haemophilus influenzae GN=HI1680 PE=3 SV=1 Length = 718
Score = 35.8 bits (81), Expect = 0.12 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%) Frame = +1
Query: 91 GVLAENLPVLATDEKYNEAFYTAAKRLVTAIDGLPDIEGPKFEENKRE-----SNFKTRE 255 G + + L ++ FY AK+++ ++ + +I F + + + +E Sbjct: 617 GAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQE 676
Query: 256 ETAEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK 360 TAE+R FSL L +I ++P Q+Y Y K+ Sbjct: 677 MTAEERAVFSLPYQQLNLITQLLP--QFYGYFKKE 709
>sp|Q8U070|SRP54_PYRFU Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1 Length = 443
Score = 33.9 bits (76), Expect = 0.46 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%) Frame = +1
Query: 13 LVTTQKEGAVTGGPEFIKAVGDKVLEGVLAENLPV--LATDEKYNEAFYTAAKRLVTAID 186 ++ T+ +G+ GG L V A P+ + T EK ++ R V+ + Sbjct: 244 IIVTKLDGSAKGGG---------ALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL 294
Query: 187 GLPDIEG--PKFEENKRESNFKTREETAEKRGQFSL 288 GL DI+G KF+E ++E K + RG+F+L Sbjct: 295 GLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTL 330
>sp|Q555D2|Y6503_DICDI Uncharacterized protein DDB_G0274915 OS=Dictyostelium discoideum GN=DDB_G0274915 PE=4 SV=2 Length = 1839
Score = 33.5 bits (75), Expect = 0.59 Identities = 28/90 (31%), Positives = 42/90 (46%) Frame = -1
Query: 323 TTKAMTSNPPTTRENCPRFSAVSSLVLKLDSRLFSSNLGPSISGSPSIAVTSLFAAV*KA 144 TT + SNP TT FS+ S LF ++ S + + + TSLF + + Sbjct: 1086 TTSGLFSNPSTTSTGS-LFSSNPLGSTASTSSLFGASTLASTATTTATPTTSLFGSTTPS 1144
Query: 143 SLYFSSVAKTGRFSARTPSNTLSPTALINS 54 S SS + + S TPSN+L T+ +S Sbjct: 1145 SSSSSSSSSSSTTSTTTPSNSLFGTSSSSS 1174
>sp|Q15R45|TIG_PSEA6 Trigger factor OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tig PE=3 SV=1 Length = 436
Score = 31.6 bits (70), Expect = 2.3 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%) Frame = +1
Query: 70 VGDKVLEGVLAEN---LPVLATDEKYNEAFYTAAKRLVTA----IDGLPDIEGPKFEENK 228 V ++V+EG+LA N LP D++ N A +R +D LP++ F+EN Sbjct: 286 VKEQVIEGLLANNEIDLPKALVDQEINALREQAKQRFSQQQGGNVDNLPELPADLFQENA 345
Query: 229 RE 234 R+ Sbjct: 346 RK 347
>sp|A2QMB8|ROT1_ASPNC Protein rot1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rot1 PE=3 SV=1 Length = 236
Score = 31.6 bits (70), Expect = 2.3 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = +1
Query: 22 TQKEGAVTGGPEFIKAVGDKVLEGVLAENLPVLATDEKYNEAFYTA 159 T K V GP F +GDK LE L + D Y EA+Y A Sbjct: 30 TTKSRQVVTGPGFYDPIGDKFLEPNLTGISYSFSADGHYEEAYYRA 75
>sp|Q5QXN7|TIG_IDILO Trigger factor OS=Idiomarina loihiensis GN=tig PE=3 SV=1 Length = 433
Score = 31.2 bits (69), Expect = 2.9 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Frame = +1
Query: 70 VGDKVLEGVLAEN---LPVLATDEKYNEAFYTAAKRLVTAIDGLPDIEGPKFEENKRE 234 V ++VL+G++ N LP D++ ++ AA+R ++ +PD+ FEE +E Sbjct: 286 VKEQVLKGIVENNDVELPKSMIDQEIDQLRKQAAQRFGGNVEQMPDLPAELFEEQAKE 343
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SV74 |
Definition |
tr|A9SV74|A9SV74_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
120 |
Score (bit) |
201.0 |
E-value |
1.0e-50 |
Report |
|