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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919121
Clone id YMU001_000121_E01
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTTTCATGATCTGTACACTTTTCTCAACTGCAGCATGCTCAAGAGCTGCCTTCCCTGCTA
AAATGATTTGATGCCCCTTGCTGGGATTCTGAGCAGGTGCTTTTCTCCTAGGCCTCAAGA
CATTCTCAAGTATAACCCCTCCTAACTTTGATATCTCACTTGTGGTACTCTTACCGTAAT
TTTCTCTTGAATTTTGGTCACAAATAGGTAACACTTTTCCAAATCTATTTTTTGGCCTTG
TTACCATCTCAGATACACCCCCTTTGAACATTCTGTGCCCTGCCGAGGTGATTTTATTGC
CACCATCCTCCAAACCCTGAGCAAATACCTTCTTTCGTCTATATCTGCCTGAACTCACTT
CCTCTCCTAAAGCTGCCTTCCCTGCTAATATAATTTGGTCATACTCTTCTCGTGTCTTAC
GAACAGGAGCTTCTAAAGCCAACAAAAACACTTT
■■Homology search results ■■ -
sp_hit_id Q96PV4
Definition sp|Q96PV4|PNMA5_HUMAN Paraneoplastic antigen-like protein 5 OS=Homo sapiens
Align length 138
Score (bit) 30.8
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919121|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_E01.
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96PV4|PNMA5_HUMAN Paraneoplastic antigen-like protein 5 OS=H...    31   2.9  
sp|P84092|AP2M1_RAT AP-2 complex subunit mu-1 OS=Rattus norvegic...    30   6.4  
sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii ...    30   6.4  
sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu-1 OS=Mus musculus ...    30   6.4  
sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu-1 OS=Macaca fascic...    30   6.4  
sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu-1 OS=Homo sapiens ...    30   6.4  
sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu-1 OS=Bos taurus GN...    30   6.4  
sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1        29   8.2  
sp|Q4WN54|SWF1_ASPFU Palmitoyltransferase swf1 OS=Aspergillus fu...    29   8.2  
sp|P55123|LKTA_PASSP Leukotoxin OS=Pasteurella haemolytica-like ...    29   8.4  
sp|P01021|BNP_AGKHA Bradykinin-potentiating and C-type natriuret...    29   8.4  

>sp|Q96PV4|PNMA5_HUMAN Paraneoplastic antigen-like protein 5 OS=Homo
           sapiens GN=PNMA5 PE=2 SV=2
          Length = 448

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
 Frame = -1

Query: 445 LLALEAPVRKTREEYDQIILAGKAALGEEVSSGR-YRR----KKVFAQGLEDGGNKITSA 281
           LL +  P+  +  E    + AG   L      GR +RR    K VF + L D  N  T  
Sbjct: 21  LLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRREDNAKAVFIE-LADTVNYTTLP 79

Query: 280 GHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENY-----GKSTTSEISKLG-----GVI 131
            H   KGG  E+V +P+N   + L      SR NY     G+S T     LG        
Sbjct: 80  SHIPGKGGSWEVVVKPRNPDDEFL------SRLNYFLKDEGRSMTDVARALGCCSLPAES 133

Query: 130 LENVLRPRRKAPAQNPSK 77
           L+  + P+ ++P   P K
Sbjct: 134 LDAEVMPQVRSPPLEPPK 151


>sp|P84092|AP2M1_RAT AP-2 complex subunit mu-1 OS=Rattus norvegicus
           GN=Ap2m1 PE=1 SV=1
          Length = 435

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = -1

Query: 418 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 239
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 238 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLG 140
                 G  +P C     D+   E  GK T  E SK G
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG 237


>sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii
           GN=AP2M1 PE=2 SV=1
          Length = 435

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = -1

Query: 418 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 239
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 238 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLG 140
                 G  +P C     D+   E  GK T  E SK G
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG 237


>sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu-1 OS=Mus musculus
           GN=Ap2m1 PE=1 SV=1
          Length = 435

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = -1

Query: 418 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 239
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 238 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLG 140
                 G  +P C     D+   E  GK T  E SK G
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG 237


>sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu-1 OS=Macaca
           fascicularis GN=AP2M1 PE=2 SV=1
          Length = 435

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = -1

Query: 418 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 239
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 238 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLG 140
                 G  +P C     D+   E  GK T  E SK G
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG 237


>sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu-1 OS=Homo sapiens
           GN=AP2M1 PE=1 SV=2
          Length = 435

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = -1

Query: 418 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 239
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 238 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLG 140
                 G  +P C     D+   E  GK T  E SK G
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG 237


>sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu-1 OS=Bos taurus
           GN=AP2M1 PE=2 SV=1
          Length = 435

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = -1

Query: 418 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 239
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 238 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLG 140
                 G  +P C     D+   E  GK T  E SK G
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG 237


>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
          Length = 5376

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 246  ISDTPPLNILCPAEVILLPPSSKP*ANTFFRLYLPELTSSP 368
            ++ TPP     PAEV  +PP+S P   T     L E+T++P
Sbjct: 1021 VTTTPPEETTIPAEVTTVPPASIPPEET---ASLTEVTTTP 1058


>sp|Q4WN54|SWF1_ASPFU Palmitoyltransferase swf1 OS=Aspergillus
           fumigatus GN=swf1 PE=3 SV=1
          Length = 379

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 228 FFGLVTISDTPPLNILCPAEVILLPPSSKP*ANTFFRLYLPELTSSPKAAFPANII 395
           FF  +  S    L++L   E + +P S+ P  +TF RL++P L   P     A+++
Sbjct: 41  FFSSINSSQIFFLSLLIAGECMFIP-SAWPRVSTFHRLFIPALALLPYVFLYASVV 95


>sp|P55123|LKTA_PASSP Leukotoxin OS=Pasteurella haemolytica-like sp.
           (strain 5943B) GN=lktA PE=3 SV=1
          Length = 947

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 442 LALEAPVRKTREEYDQII--LAGKAALGEEVSSGRYRRKKVFAQGLEDG 302
           L  E  +R T++++D  I  LAG + LGE+V SG     K +A   E+G
Sbjct: 455 LQAERVIRITQQQWDNNIGNLAGISRLGEKVMSG-----KAYADAFEEG 498
tr_hit_id B3S250
Definition tr|B3S250|B3S250_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens
Align length 91
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919121|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_E01.
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3S250|B3S250_TRIAD Putative uncharacterized protein OS=Trich...    37   0.38 
tr|O17873|O17873_CAEEL Protein F46C5.6, partially confirmed by t...    36   1.1  
tr|A8WSK7|A8WSK7_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.9  
tr|A8LJL9|A8LJL9_DINSH Peptidase S58 DmpA OS=Dinoroseobacter shi...    34   3.2  
tr|Q0FHW8|Q0FHW8_9RHOB Probable phosphopyruvate hydratase OS=Ros...    34   4.2  
tr|B0UFR0|B0UFR0_METS4 ABC-type multidrug transport system ATPas...    33   5.4  
tr|Q8CV02|Q8CV02_OCEIH Isochorismate synthase OS=Oceanobacillus ...    33   7.1  
tr|Q0B1K0|Q0B1K0_BURCM Aspartate racemase OS=Burkholderia ambifa...    33   9.3  
tr|A6T3G8|A6T3G8_JANMA Cytochrome C-type biogenesis transmembran...    33   9.3  
tr|A8RRL1|A8RRL1_9CLOT Superoxide dismutase [Cu-Zn] OS=Clostridi...    33   9.3  

>tr|B3S250|B3S250_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_57926 PE=4 SV=1
          Length = 834

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 24/91 (26%), Positives = 42/91 (46%)
 Frame = -1

Query: 310 EDGGNKITSAGHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKLGGVI 131
           E+ GNKI+ A H +F+   S+M +  K    K   I    S+    K+TTS+++      
Sbjct: 127 ENDGNKISQANHNIFQ---SKMKSTTKENADKPRRITRSKSKAIASKATTSKVTTKTDQA 183

Query: 130 LENVLRPRRKAPAQNPSKGHQIILAGKAALE 38
           ++ V   +  AP     +  +I++ G    E
Sbjct: 184 MKKVANKKPTAPTVKNLRNRKIVIPGSKPKE 214


>tr|O17873|O17873_CAEEL Protein F46C5.6, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=F46C5.6
           PE=4 SV=5
          Length = 945

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = -1

Query: 271 MFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKL 143
           +  GG S+++ +  +   K+LPI  +N +EN G++T  ++ +L
Sbjct: 457 LLHGGSSDVIAKISHNLSKILPILYENVKENPGRTTVQQVDRL 499


>tr|A8WSK7|A8WSK7_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG03194 PE=4 SV=2
          Length = 960

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = -1

Query: 271 MFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKL 143
           +  GG S+++ +  +   K+LPI  +N ++N GK+T  ++ +L
Sbjct: 464 LLHGGSSDVIAKISHNLSKILPILYENVKDNPGKTTIQQLDRL 506


>tr|A8LJL9|A8LJL9_DINSH Peptidase S58 DmpA OS=Dinoroseobacter shibae
           (strain DFL 12) GN=Dshi_2889 PE=4 SV=1
          Length = 327

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -1

Query: 418 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKI----TSAGHRMFKGGVS 251
           KT E+ D ++L+G +ALG + +SG     +   +G + GG ++     +    +  GG  
Sbjct: 65  KTVEQVDALVLSGGSALGLDAASGVADALRAAGRGFDVGGQRVPIVPAAILFDLLNGGDK 124

Query: 250 EMVTRPKNRFGK 215
           + +  P N  G+
Sbjct: 125 DWMVNPYNWLGR 136


>tr|Q0FHW8|Q0FHW8_9RHOB Probable phosphopyruvate hydratase
           OS=Roseovarius sp. HTCC2601 GN=R2601_24569 PE=4 SV=1
          Length = 281

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
 Frame = -1

Query: 388 LAGKAALGEEVS----SGRY-RRKKVFAQGLEDGGNKITSAGHRM---FKGGVSEMVTRP 233
           LAG A LG E +    +GR+ RR+++F QG+ED      +  HR+   F+    +     
Sbjct: 52  LAGAAELGGEAALVAETGRHARRRELFLQGVED----FRAHAHRLADVFRADRHDHEFLD 107

Query: 232 KNRFGKVLPICD---QNSRENYGKSTTS-EISKLGGVILENVLRPRRKAPAQNPSKGHQI 65
            +R  +VL   D      RE+ G    +  I +LGG +   +     +A A+N       
Sbjct: 108 VDRVVRVLAAIDDVHHRHREDAGGGAANVAIERLGGELGRGL--GGGEADAENGVGAETA 165

Query: 64  ILAGKAALEHAAVE 23
           ++ G   L+H AV+
Sbjct: 166 LVVGAVELDHRAVD 179


>tr|B0UFR0|B0UFR0_METS4 ABC-type multidrug transport system ATPase
           and permease components-like protein OS=Methylobacterium
           sp. (strain 4-46) GN=M446_2335 PE=4 SV=1
          Length = 901

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 196 QNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKGHQIILAGKAALEHAAVEKS 17
           QN R         EI +L   +       RR APA +  +G  I+LAG AA + A+ E+ 
Sbjct: 328 QNERRRAALPAFGEIGRLVAALEARAKATRRLAPAASFPRGGPIVLAGAAAYDPASGERL 387

Query: 16  V 14
           +
Sbjct: 388 I 388


>tr|Q8CV02|Q8CV02_OCEIH Isochorismate synthase OS=Oceanobacillus
           iheyensis GN=dhbC PE=4 SV=1
          Length = 398

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = -1

Query: 256 VSEMVTRPKNRFGKVLPICDQNSRENY-GKSTTSEISKLGGVILENVL---RPRRKAPAQ 89
           V  ++T   +++   L   ++N  +   G S    ISK G +++ N L   RPR+K P +
Sbjct: 161 VQNLITHNHDKYNFALNTSEENKEKTLIGASPELLISKKGSIVVSNPLAGSRPRQKDPEK 220

Query: 88  NPSKGHQIILAGKAALEHAAVEKSV 14
           +     ++  + K   EH  V +SV
Sbjct: 221 DVLMAQELRHSEKDLHEHKLVVQSV 245


>tr|Q0B1K0|Q0B1K0_BURCM Aspartate racemase OS=Burkholderia ambifaria
           (strain ATCC BAA-244 / AMMD) GN=Bamb_6429 PE=4 SV=1
          Length = 234

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 25/87 (28%), Positives = 42/87 (48%)
 Frame = -1

Query: 313 LEDGGNKITSAGHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKLGGV 134
           LE G   +   G R    G +  V+R K+R+G  + I +   +EN   +   E++K  G+
Sbjct: 115 LERGYKTVGLLGSRYTMTG-TYFVSRLKDRYGLDVVIAEGEHQENVHNALYEELAK--GI 171

Query: 133 ILENVLRPRRKAPAQNPSKGHQIILAG 53
            L       R+A A   S+G ++I+ G
Sbjct: 172 FLPETREKFRRAIADLVSRGAEVIVLG 198


>tr|A6T3G8|A6T3G8_JANMA Cytochrome C-type biogenesis transmembrane
           protein OS=Janthinobacterium sp. (strain Marseille)
           (Minibacterium massiliensis) GN=mma_3375 PE=4 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -1

Query: 343 YRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKST 164
           YR   V+    EDGG+K+   G+ M   G +      +   G   P+       +Y    
Sbjct: 313 YRGVAVYQSSFEDGGSKLKVTGYPM--QGAAHAAFSLQGEVGNTTPLAASGKNADY---- 366

Query: 163 TSEISKLGGVILENVLRPRRKAPAQNPSKG 74
           T E S      +EN+ +  +   A NP++G
Sbjct: 367 TVEWSGFRAFNVENMAKNGQDVRAVNPNQG 396


>tr|A8RRL1|A8RRL1_9CLOT Superoxide dismutase [Cu-Zn] OS=Clostridium
           bolteae ATCC BAA-613 GN=CLOBOL_03026 PE=3 SV=1
          Length = 209

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 195 WSQIGNTFPNLFFGLVTISDTPPLNILCPAEVILLPPSSKP*ANTFFRLYL 347
           W + G+  PNL  GLV    TP   +L  AE+  LP   +P +  F+ +++
Sbjct: 66  WVRGGDAAPNLS-GLVKFYQTPYSGVLVEAEIFNLPNKQEPGSTDFYAMHI 115