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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919127
Clone id YMU001_000121_E08
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGTCATTCATGTCAAATGTGCCTACGTCATCGCTGTATAGTGTAAGGTCCAGCAATGTAA
GAGGTCTTTCAAGTAGCTCAGTAGCGGATTCGCCCATGGCAACAAGCAGCAATGCGAGCT
CAGAACACAGTTTTAGGATTGCTATTGATCAAGAGGGAAGCGAAATAGGGGATGAGATGG
TCAGTGAAAAGGGAAGCAAAACCTCACCGATAAGTCAACCTGACTCTTACAACGAAAGGA
AGGTGAATAGCTGGCTATGTAGCCCGAATTATGCAAATGGGAACAATGCGGACATCTTGC
AAGTGTTCGAACAGGGAATAGAGAGATTGTCTAGTACCGAATCTCCTCTGATTAGTCATT
CTGACAGTGGTGTGAAGTGTGATAATTTCACTTTGGAACCTATTCAGTAGGCCTTCAAGG
CATTTCCGGAGACTGTTCTTGTGAGAGCTTCGATCAAATGTATCAGCAGCTATGTCAGCA
TAAGAGTGGTAACACCAGAGT
■■Homology search results ■■ -
sp_hit_id Q2YY06
Definition sp|Q2YY06|ODO2_STAAB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
Align length 68
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919127|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_E08.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2YY06|ODO2_STAAB Dihydrolipoyllysine-residue succinyltransfe...    32   1.6  
sp|Q54LK8|Y7027_DICDI Uncharacterized protein DDB_G0286591 OS=Di...    32   2.1  
sp|P36304|POLR_KYMVJ RNA replicase polyprotein OS=Kennedya yello...    31   3.7  
sp|P45955|YBGF_ECOLI Uncharacterized protein ybgF OS=Escherichia...    30   4.8  
sp|Q5AEN1|CCPR_CANAL Cytochrome c peroxidase, mitochondrial OS=C...    30   6.4  
sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2    30   8.2  

>sp|Q2YY06|ODO2_STAAB Dihydrolipoyllysine-residue
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex OS=Staphylococcus aureus (strain
           bovine RF122 / ET3-1) GN=odhB PE=3 SV=1
          Length = 422

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 105 SSNASSEHSFRIAIDQ-EGSEIGDEMVSEKGSKTSPISQPDSYNERKVNSWLCSPNYANG 281
           S NAS E+S      Q E +    E  + K +  + ++Q + YN+++VN+   +  YA  
Sbjct: 79  SGNASKENSNDNTPQQNEETNNKKEETTNKSADNAEVNQTNDYNQQRVNATPSARRYARE 138

Query: 282 NNADILQV 305
           N  ++ +V
Sbjct: 139 NGVNLAEV 146


>sp|Q54LK8|Y7027_DICDI Uncharacterized protein DDB_G0286591
           OS=Dictyostelium discoideum GN=DDB_G0286591 PE=4 SV=1
          Length = 789

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +3

Query: 99  ATSSNASSEHSFRIAIDQEGSEIGDEMVSEKGSKTSPISQPDSYNERKVNSWLCSPNYAN 278
           ++S+N ++ H+  + ID +  +  DE+  E    ++ ++   S   +K+N+   + N  +
Sbjct: 259 SSSNNNNNTHNSTLFIDDDDGDNNDEINDENDINSNNLTFSSSTKSKKINN---NNNSID 315

Query: 279 GNNADILQV---FEQGIERLSSTESPLISHSD 365
            NN +I      +   I +LS  ES +  + D
Sbjct: 316 SNNTNINNNNNNYNNSINKLSGRESKVEFNED 347


>sp|P36304|POLR_KYMVJ RNA replicase polyprotein OS=Kennedya yellow
           mosaic virus (strain Jervis bay) PE=3 SV=1
          Length = 1874

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -2

Query: 473 IAADTFDRSSHKNSLRKCLEG-LLNRFQSEIITLHTTVRMTNQRRFGTRQSLYSLFEHLQ 297
           I  ++F  S H +   K LE  LL      + T  ++V     ++F   Q     F+HL 
Sbjct: 55  IPINSFGSSPHPHPAHKTLETHLLFTHWMHLCTQPSSVLFMKPQKFMKLQRKNKFFQHLH 114

Query: 296 DVRIVPICIIRAT*PAIHLP 237
           + R+ P   +R    + HLP
Sbjct: 115 NYRLTPTDSVRFPSTSPHLP 134


>sp|P45955|YBGF_ECOLI Uncharacterized protein ybgF OS=Escherichia
           coli (strain K12) GN=ybgF PE=4 SV=2
          Length = 263

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 105 SSNASSEHSFRIAIDQEGSEIGDEMVSEKGSKTSPISQPDSYNERKVNSWLCSPNYANGN 284
           S NA+++++  IA+ Q+ S   D MV+ +    +    PDS      N WL   NY  G 
Sbjct: 139 SGNANTDYNAAIALVQDKSRQDDAMVAFQNFIKN---YPDSTYLPNANYWLGQLNYNKGK 195

Query: 285 NADILQVF 308
             D    F
Sbjct: 196 KDDAAYYF 203


>sp|Q5AEN1|CCPR_CANAL Cytochrome c peroxidase, mitochondrial
           OS=Candida albicans GN=CCP1 PE=3 SV=1
          Length = 366

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 330 TISLFPVRTLARCPHCSHLHNSGYIASYSPSF 235
           T++L     L RC    H HNSGY   + PSF
Sbjct: 240 TVALLGAHVLGRC----HKHNSGYDGPWGPSF 267


>sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2
          Length = 1912

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 165  IGDEMVSEKGSKTSPISQPDSYNERKVNSWLCSPNYANGNNADILQVFEQGIER 326
            I  E VS+  S   P+S P      ++   + SP+  NG    I++  EQ +++
Sbjct: 926  IKTEPVSKPSSYRYPLSPPQENMSSRIKQEISSPSRDNGQPKSIIETMEQHLKQ 979
tr_hit_id A7Q3F2
Definition tr|A7Q3F2|A7Q3F2_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera
Align length 70
Score (bit) 47.8
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919127|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_E08.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q3F2|A7Q3F2_VITVI Chromosome chr13 scaffold_48, whole genom...    48   3e-04
tr|Q494P4|Q494P4_ARATH At2g40070 (En/Spm-like transposon protein...    40   0.079
tr|A8MRI7|A8MRI7_ARATH Uncharacterized protein At2g40070.2 OS=Ar...    40   0.079
tr|A5G3X4|A5G3X4_GEOUR Cysteine desulfurase family protein OS=Ge...    38   0.30 
tr|Q6CRE5|Q6CRE5_KLULA KLLA0D09691p OS=Kluyveromyces lactis GN=K...    36   1.1  
tr|Q802X2|Q802X2_DANRE Zgc:55307 OS=Danio rerio GN=zgc:55307 PE=...    35   1.5  
tr|Q6P0F7|Q6P0F7_DANRE Zgc:55307 OS=Danio rerio GN=zgc:55307 PE=...    35   1.5  
tr|A7HKI5|A7HKI5_FERNB ISCpe7, transposase OS=Fervidobacterium n...    35   2.6  
tr|A7HKE0|A7HKE0_FERNB ISCpe7, transposase OS=Fervidobacterium n...    35   2.6  
tr|A7HK54|A7HK54_FERNB Insertion element protein OS=Fervidobacte...    35   2.6  
tr|A7HK18|A7HK18_FERNB Putative uncharacterized protein OS=Fervi...    35   2.6  
tr|A7HJ99|A7HJ99_FERNB Putative uncharacterized protein OS=Fervi...    35   2.6  
tr|A7HJ62|A7HJ62_FERNB ISCpe7, transposase OS=Fervidobacterium n...    35   2.6  
tr|A7HJ19|A7HJ19_FERNB Insertion element protein OS=Fervidobacte...    35   2.6  
tr|Q8CW94|Q8CW94_ECOL6 Putative uncharacterized protein ybgF OS=...    34   3.3  
tr|Q011D4|Q011D4_OSTTA Chromosome 09 contig 1, DNA sequence OS=O...    34   3.3  
tr|A5C8L0|A5C8L0_VITVI Putative uncharacterized protein OS=Vitis...    34   3.3  
tr|A7QBR5|A7QBR5_VITVI Chromosome chr1 scaffold_75, whole genome...    34   4.4  
tr|Q22DS0|Q22DS0_TETTH Putative uncharacterized protein OS=Tetra...    34   4.4  
tr|Q54CJ5|Q54CJ5_DICDI Putative uncharacterized protein OS=Dicty...    33   5.7  
tr|Q6PEJ1|Q6PEJ1_DANRE Synaptophysin-like protein OS=Danio rerio...    33   5.8  
tr|B6F919|B6F919_9ENTR Putative uncharacterized protein (Fragmen...    33   7.4  

>tr|A7Q3F2|A7Q3F2_VITVI Chromosome chr13 scaffold_48, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029266001
           PE=4 SV=1
          Length = 520

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +3

Query: 9   MSNVPTSSLYXXXXXXXXXXXXXXXADSPMATSSNASSEHSF-RIAIDQEGSEIGDEMVS 185
           M+N+P SS+Y               +DSP+ATSSNASSE S    A+  +G EI D++ S
Sbjct: 448 MTNIPASSMYSVRSGPTRSRTVSV-SDSPLATSSNASSEVSVNNNALCVDGGEIEDDIGS 506

Query: 186 EKGSKTSPIS 215
           E+G + SP S
Sbjct: 507 ERGGRPSPAS 516


>tr|Q494P4|Q494P4_ARATH At2g40070 (En/Spm-like transposon protein)
           OS=Arabidopsis thaliana GN=At2g40070 PE=2 SV=1
          Length = 607

 Score = 39.7 bits (91), Expect = 0.079
 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 9   MSNVPTSSLYXXXXXXXXXXXXXXXADSPMATSSNASSEHSF--RIAIDQEGSEIGDEMV 182
           M+N+P SS+Y                 SP+ATSSNASSE S      I  E SE  D+  
Sbjct: 534 MTNIPASSMYSVRSGHTRGRPMNVSDSSPLATSSNASSEISVCNNNGICLEASEKEDDAG 593

Query: 183 SEKGSKTSPIS 215
           SE+G + SP S
Sbjct: 594 SERGCR-SPAS 603


>tr|A8MRI7|A8MRI7_ARATH Uncharacterized protein At2g40070.2
           OS=Arabidopsis thaliana GN=At2g40070 PE=4 SV=1
          Length = 567

 Score = 39.7 bits (91), Expect = 0.079
 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 9   MSNVPTSSLYXXXXXXXXXXXXXXXADSPMATSSNASSEHSF--RIAIDQEGSEIGDEMV 182
           M+N+P SS+Y                 SP+ATSSNASSE S      I  E SE  D+  
Sbjct: 494 MTNIPASSMYSVRSGHTRGRPMNVSDSSPLATSSNASSEISVCNNNGICLEASEKEDDAG 553

Query: 183 SEKGSKTSPIS 215
           SE+G + SP S
Sbjct: 554 SERGCR-SPAS 563


>tr|A5G3X4|A5G3X4_GEOUR Cysteine desulfurase family protein
           OS=Geobacter uraniireducens (strain Rf4) GN=Gura_2313
           PE=4 SV=1
          Length = 380

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 25/75 (33%), Positives = 39/75 (52%)
 Frame = +3

Query: 153 EGSEIGDEMVSEKGSKTSPISQPDSYNERKVNSWLCSPNYANGNNADILQVFEQGIERLS 332
           EG ++   +V   GS +S + QPD   ER  +  + +P  A G  A I  + E G+ER+ 
Sbjct: 215 EGVDLMPLIVGGTGSFSSELGQPDVLPERYESGTMNTPGIA-GLKAGIEFILETGLERIR 273

Query: 333 STESPLISHSDSGVK 377
             E+ L+S    G+K
Sbjct: 274 QKETVLVSQLLHGLK 288


>tr|Q6CRE5|Q6CRE5_KLULA KLLA0D09691p OS=Kluyveromyces lactis
           GN=KLLA0D09691g PE=4 SV=1
          Length = 515

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 219 PDSYNERKVNSWLCSPNYANGNNAD-ILQVFEQGIERLSSTESPLISHSDSGVKCDNFTL 395
           PDS +E K+N   C     +  N D  L +F + I+ +S  +SP+ + SD+ + C++  L
Sbjct: 392 PDSCDEHKLNVLRCLILVNSKFNVDRSLDIFNKNIQSISKEKSPITNTSDAALLCEDLVL 451


>tr|Q802X2|Q802X2_DANRE Zgc:55307 OS=Danio rerio GN=zgc:55307 PE=2
           SV=1
          Length = 576

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 28/88 (31%), Positives = 41/88 (46%)
 Frame = +3

Query: 117 SSEHSFRIAIDQEGSEIGDEMVSEKGSKTSPISQPDSYNERKVNSWLCSPNYANGNNADI 296
           SS  +F I +  E S+   + V ++  K S   + +  N+  VNS L  PN  N +    
Sbjct: 260 SSSSTFSIEMIDE-SDFNLDDVEDEQEKASDTFEKEELNKWLVNSSLVKPNQTNPDAERF 318

Query: 297 LQVFEQGIERLSSTESPLISHSDSGVKC 380
            Q+F+   E  SS  S  +S SD G  C
Sbjct: 319 KQIFKPFYESFSS--SDWLSKSDCGSCC 344


>tr|Q6P0F7|Q6P0F7_DANRE Zgc:55307 OS=Danio rerio GN=zgc:55307 PE=2
           SV=1
          Length = 576

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 28/88 (31%), Positives = 41/88 (46%)
 Frame = +3

Query: 117 SSEHSFRIAIDQEGSEIGDEMVSEKGSKTSPISQPDSYNERKVNSWLCSPNYANGNNADI 296
           SS  +F I +  E S+   + V ++  K S   + +  N+  VNS L  PN  N +    
Sbjct: 260 SSSSTFSIEMIDE-SDFNLDDVEDEQEKASDTFEEEELNKWLVNSSLVKPNQTNPDAERF 318

Query: 297 LQVFEQGIERLSSTESPLISHSDSGVKC 380
            Q+F+   E  SS  S  +S SD G  C
Sbjct: 319 KQIFKPFYESFSS--SDWLSKSDCGSCC 344


>tr|A7HKI5|A7HKI5_FERNB ISCpe7, transposase OS=Fervidobacterium
           nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)
           GN=Fnod_0556 PE=4 SV=1
          Length = 312

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 297 RCPHCSHLHNSGYIASYSPSFRC-----KSQVDLSVRFCFPFH*PSHPLFRFPL 151
           RC HC+H+     I  Y   FRC     K+ V LS+    PF+      FRFP+
Sbjct: 55  RCVHCNHVMEIYKIRRYFVRFRCRKCNFKTSVPLSLPQPVPFNFHPFKFFRFPI 108


>tr|A7HKE0|A7HKE0_FERNB ISCpe7, transposase OS=Fervidobacterium
           nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)
           GN=Fnod_0509 PE=4 SV=1
          Length = 312

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 297 RCPHCSHLHNSGYIASYSPSFRC-----KSQVDLSVRFCFPFH*PSHPLFRFPL 151
           RC HC+H+     I  Y   FRC     K+ V LS+    PF+      FRFP+
Sbjct: 55  RCVHCNHVMEIYKIRRYFVRFRCRKCNFKTSVPLSLPQPVPFNFHPFKFFRFPI 108


>tr|A7HK54|A7HK54_FERNB Insertion element protein
           OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
           5306 / Rt17-B1) GN=Fnod_0422 PE=4 SV=1
          Length = 312

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 297 RCPHCSHLHNSGYIASYSPSFRC-----KSQVDLSVRFCFPFH*PSHPLFRFPL 151
           RC HC+H+     I  Y   FRC     K+ V LS+    PF+      FRFP+
Sbjct: 55  RCVHCNHVMEIYKIRRYFVRFRCRKCNFKTSVPLSLPQPVPFNFHPFKFFRFPI 108