BP919134
Clone id YMU001_000121_F03
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTGGAAGTAAGGATAAAAAGAAACTTCAATAGCATATTCTATGCACAGAT
CTTACAAATCACCCTTCACCAACAAATAATGTAGTCTCTCTAGTGCTGGACACATTGAAC
GTCTAATCGAAACATGACCATTGTGATTTATGACAAGATATACACACCCTACATCTCCTA
TGGCAAAAGTTGTGCATGTTAAGTTCCGGCATGATTATACCCTCAAATTAACTGCTTTAG
TTCATGTCCGTCTTGAACCTCTTTGTTGTCTATAATCCTCGCAAAGACGGTTCCTTGAGA
AGTCCAAAGCCTGTGTGACAACTCCTTGCAGGACCAATTCCTCAGAGTACACCTCTAAAC
CTTTCACAAGAAATTGACTACAAGTTTCCAAGCCTTTTTCATTAGCAACTACTACAAGAG
GTTTGTCATCCTCTCTATCTGATTGTGATAAGCAAGTTCTTGCATCCACAATCTGACCAC
CAGCACTTTCTACGATCGCTTTCAAGGCTGTGG
■■Homology search results ■■ -
sp_hit_id A0JNA8
Definition sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus
Align length 75
Score (bit) 51.6
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919134|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_F03.
(501 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN... 52 2e-06
sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens ... 51 3e-06
sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus ... 50 4e-06
sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevi... 47 4e-05
sp|Q8K424|TRPV3_MOUSE Transient receptor potential cation channe... 32 1.7
sp|Q9HIX6|COBB_THEAC Probable cobyrinic acid A,C-diamide synthas... 31 2.8
sp|Q54VQ0|Y6442_DICDI Uncharacterized protein DDB_G0280205 OS=Di... 31 3.7
sp|Q8NET8|TRPV3_HUMAN Transient receptor potential cation channe... 30 4.9
sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2 30 8.2

>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus
GN=PAXIP1 PE=2 SV=1
Length = 984

Score = 51.6 bits (122), Expect = 2e-06
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = -3

Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332
+ +KAIVE AGG+++ R + + +V+++ E L C ++ +G++V++
Sbjct: 904 STMKAIVECAGGKVLSRQPSFRKLMEHKQNKSLSEIVLISCENDLHLCREYFARGIDVHN 963

Query: 331 EELVLQGVVTQALDF 287
E VL GV+TQ LD+
Sbjct: 964 AEFVLTGVLTQTLDY 978


>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens
GN=PAXIP1 PE=1 SV=1
Length = 1035

Score = 50.8 bits (120), Expect = 3e-06
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = -3

Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332
+ +KAIVE AGG+++ R + +++++ E L C ++ +G++V++
Sbjct: 955 STMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHN 1014

Query: 331 EELVLQGVVTQALDF 287
E VL GV+TQ LD+
Sbjct: 1015 AEFVLTGVLTQTLDY 1029


>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus
GN=Paxip1 PE=1 SV=1
Length = 1056

Score = 50.4 bits (119), Expect = 4e-06
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = -3

Query: 493 LKAIVESAGGQIV----DARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEE 326
+KAIVE AGG+++ R + + +++++ E L C ++ +G++V++ E
Sbjct: 978 MKAIVECAGGKVLAKQPSFRKLMEHKQNKSLSEIILISCENDLHLCREYFARGIDVHNAE 1037

Query: 325 LVLQGVVTQALDF 287
VL GV+TQ LD+
Sbjct: 1038 FVLTGVLTQTLDY 1050


>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis
GN=paxip1 PE=1 SV=1
Length = 1256

Score = 47.4 bits (111), Expect = 4e-05
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = -3

Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332
+ +KAIVE AGG+I+ R + + +++++ E L C ++ ++V++
Sbjct: 1176 STMKAIVECAGGKILTKQPSFRKIMEHKQNKRLAEIILISCENDLHLCREYFAGSVDVHN 1235

Query: 331 EELVLQGVVTQALDF 287
E VL GV+TQALD+
Sbjct: 1236 AEFVLTGVLTQALDY 1250


>sp|Q8K424|TRPV3_MOUSE Transient receptor potential cation channel
subfamily V member 3 OS=Mus musculus GN=Trpv3 PE=2 SV=2
Length = 791

Score = 32.0 bits (71), Expect = 1.7
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +1

Query: 46 DLTNHPSPTNN-VVSLVLDTLNV*SKHDHCDL*QDIHT-LHLLWQKLCMLSSGMIIPSN* 219
DLTN + T+N V+ +++ N+ ++H+ L + +HT LH W+K + M S
Sbjct: 391 DLTNVDTTTDNSVLEIIVYNTNIDNRHEMLTL-EPLHTLLHTKWKK---FAKYMFFLSFC 446

Query: 220 LL*FMSV-LNLFVVYNPRKDGSLRSP 294
F ++ L L Y PR+D L P
Sbjct: 447 FYFFYNITLTLVSYYRPREDEDLPHP 472


>sp|Q9HIX6|COBB_THEAC Probable cobyrinic acid A,C-diamide synthase
OS=Thermoplasma acidophilum GN=cobB PE=3 SV=1
Length = 443

Score = 31.2 bits (69), Expect = 2.8
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -3

Query: 424 REDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQGVVTQALDFSRNRLCEDYRQQR 248
R P+V+V + G+ + +V G++ Y+ EL+ +VT+ S RL D +++
Sbjct: 110 RRTGTPIVLVIDGYGISATAAAIVSGIKAYAGELLRGVIVTRVSGESHYRLIRDAVEEK 168


>sp|Q54VQ0|Y6442_DICDI Uncharacterized protein DDB_G0280205
OS=Dictyostelium discoideum GN=DDB_G0280205 PE=4 SV=1
Length = 527

Score = 30.8 bits (68), Expect = 3.7
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3

Query: 306 TTPCRTNSSEYTSKPF-TRN*LQVSKPFSLATTTRGLSSSLSDCDKQVLASTI*PPALST 482
TTP R SS TS P + + +P +L +T + SSS S L+ST P +T
Sbjct: 251 TTPTRRISSSTTSSPIGSTTTSALKRPSTLTSTPKSSSSSSSSSSSATLSSTKTPSTTAT 310


>sp|Q8NET8|TRPV3_HUMAN Transient receptor potential cation channel
subfamily V member 3 OS=Homo sapiens GN=TRPV3 PE=1 SV=2
Length = 790

Score = 30.4 bits (67), Expect = 4.9
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +1

Query: 46 DLTNHPSPTNN-VVSLVLDTLNV*SKHDHCDL*QDIHTL-HLLWQKLCMLSSGMIIPSN* 219
DLTN + T+N V+ + + N+ ++H+ L + +HTL H+ W+K + M S
Sbjct: 391 DLTNVDTTTDNSVLEITVYNTNIDNRHEMLTL-EPLHTLLHMKWKK---FAKHMFFLSFC 446

Query: 220 LL*FMSV-LNLFVVYNPRKDGSLRSP 294
F ++ L L Y PR++ ++ P
Sbjct: 447 FYFFYNITLTLVSYYRPREEEAIPHP 472


>sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2
Length = 2541

Score = 29.6 bits (65), Expect = 8.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3

Query: 300 CVTTPCRTNSSEYTSKPFTRN*L-QVSKPFSLATTTRGLSSSLS 428
CVTT +S YTS P T+ + V+ +S+ TT +G S+ S
Sbjct: 145 CVTTTQVAFTSSYTSTPVTQKPVTTVTSTYSMTTTEKGTSAMTS 188


tr_hit_id A9SN61
Definition tr|A9SN61|A9SN61_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 82
Score (bit) 63.9
E-value 4.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919134|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_F03.
(501 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SN61|A9SN61_PHYPA Predicted protein OS=Physcomitrella paten... 64 4e-09
tr|A9THM3|A9THM3_PHYPA Predicted protein OS=Physcomitrella paten... 55 2e-06
tr|Q5JLP9|Q5JLP9_ORYSJ cDNA clone:J033024C23, full insert sequen... 51 3e-05
tr|B4DEQ6|B4DEQ6_HUMAN cDNA FLJ58501, highly similar to Homo sap... 50 5e-05
tr|Q9LVF7|Q9LVF7_ARATH Gb|AAD14441.1 (At3g21480 protein) OS=Arab... 50 6e-05
tr|B4FCX5|B4FCX5_MAIZE Putative uncharacterized protein OS=Zea m... 50 8e-05
tr|B6NAW1|B6NAW1_BRAFL Putative uncharacterized protein OS=Branc... 49 1e-04
tr|B8AXY3|B8AXY3_ORYSI Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|A7NW99|A7NW99_VITVI Chromosome chr5 scaffold_2, whole genome ... 49 1e-04
tr|A3AZX9|A3AZX9_ORYSJ Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|A3A1D7|A3A1D7_ORYSJ Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|B6LSW2|B6LSW2_BRAFL Putative uncharacterized protein OS=Branc... 49 1e-04
tr|B8A975|B8A975_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
tr|Q6DDH5|Q6DDH5_XENLA K14 protein OS=Xenopus laevis GN=paxip1 P... 47 4e-04
tr|B4F8P1|B4F8P1_MAIZE Putative uncharacterized protein OS=Zea m... 46 8e-04
tr|B8AXY2|B8AXY2_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.18
tr|A0BE30|A0BE30_PARTE Chromosome undetermined scaffold_101, who... 35 1.5
tr|A0D393|A0D393_PARTE Chromosome undetermined scaffold_36, whol... 35 2.0
tr|A0DD18|A0DD18_PARTE Chromosome undetermined scaffold_46, whol... 33 5.7
tr|B4P033|B4P033_DROYA GE18981 OS=Drosophila yakuba GN=GE18981 P... 33 9.7

>tr|A9SN61|A9SN61_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165809 PE=4 SV=1
Length = 1369

Score = 63.9 bits (154), Expect = 4e-09
Identities = 30/82 (36%), Positives = 54/82 (65%)
Frame = -3

Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314
L +IV +AGGQ+V+ + D +++ +V+ANE +++C+ L +G +VY EL+L
Sbjct: 1287 LTSIVHAAGGQVVEEYKGPAPPDSQNEGFCIVLANEDDMDSCAPLLEQGAKVYKPELILS 1346

Query: 313 GVVTQALDFSRNRLCEDYRQQR 248
G+++ L+FS++ L E+YR R
Sbjct: 1347 GIISHHLEFSKHLLFENYRGGR 1368


>tr|A9THM3|A9THM3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_170121 PE=4 SV=1
Length = 1593

Score = 54.7 bits (130), Expect = 2e-06
Identities = 26/72 (36%), Positives = 45/72 (62%)
Frame = -3

Query: 496 ALKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVL 317
A+ AI+ +AGGQ+V+ + + +D +V+ANE + C FL +G +VY EL+L
Sbjct: 1386 AIAAIIHAAGGQVVEEYEGPAPESQNEDY-CIVLANENDRDICVPFLERGAKVYKSELIL 1444

Query: 316 QGVVTQALDFSR 281
G+++ L+FS+
Sbjct: 1445 SGIISHHLEFSK 1456


>tr|Q5JLP9|Q5JLP9_ORYSJ cDNA clone:J033024C23, full insert sequence
OS=Oryza sativa subsp. japonica GN=B1150F11.13 PE=2 SV=1
Length = 671

Score = 51.2 bits (121), Expect = 3e-05
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = -3

Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314
LK++V +A G++++ R +S+ V++ E+ + C F+ G EV+ ELVL
Sbjct: 596 LKSLVVTAHGKVLE-RNAMSKMKNRSLMGAFVISCEQDYKICVPFIKNGFEVFESELVLN 654

Query: 313 GVVTQALDFSRNRL 272
G+VTQ L+F R RL
Sbjct: 655 GIVTQKLEFERYRL 668


>tr|B4DEQ6|B4DEQ6_HUMAN cDNA FLJ58501, highly similar to Homo sapiens
PAX interacting (with transcription-activation domain)
protein 1 (PAXIP1), mRNA OS=Homo sapiens PE=2 SV=1
Length = 1022

Score = 50.4 bits (119), Expect = 5e-05
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = -3

Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332
+ +KAIVE AGG+++ R + +++++ E L C ++ +G++V++
Sbjct: 942 STMKAIVECAGGKVLSKQPSFRKLVEHKQNSSLSEIILISCENDLHLCREYFARGIDVHN 1001

Query: 331 EELVLQGVVTQALDF 287
E VL GV+TQ LD+
Sbjct: 1002 AEFVLTGVLTQTLDY 1016


>tr|Q9LVF7|Q9LVF7_ARATH Gb|AAD14441.1 (At3g21480 protein)
OS=Arabidopsis thaliana GN=At3g21480 PE=2 SV=1
Length = 1041

Score = 50.1 bits (118), Expect = 6e-05
Identities = 28/78 (35%), Positives = 46/78 (58%)
Frame = -3

Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314
+ +V++ G V+ S S+ + + L+V++ E+ C FL +G EVYS EL+L
Sbjct: 942 ITTLVKAVHGLPVERLGRSSLSEDKVPENLLVLSCEEDRAICIPFLERGAEVYSSELLLN 1001

Query: 313 GVVTQALDFSRNRLCEDY 260
G+VTQ L++ R RL D+
Sbjct: 1002 GIVTQRLEYERYRLFTDH 1019


>tr|B4FCX5|B4FCX5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 292

Score = 49.7 bits (117), Expect = 8e-05
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = -3

Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314
+ ++V+S+ GQ ++ + L+V++ E+ E C+ L KG V+S EL+L
Sbjct: 188 MTSLVKSSSGQPLERVGRSIMEGKGVPPDLLVISCEEDYEACAPLLEKGASVFSVELLLN 247

Query: 313 GVVTQALDFSRNRLCED-YRQQRGSR 239
G+V Q L++ R+RL D +Q R SR
Sbjct: 248 GIVIQKLEYERHRLFMDRVKQTRSSR 273


>tr|B6NAW1|B6NAW1_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_126794 PE=4 SV=1
Length = 768

Score = 49.3 bits (116), Expect = 1e-04
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = -3

Query: 493 LKAIVESAGGQIVDARTC----LSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEE 326
+K IVE+AGG+++ + L+ R+ + ++ E ++ C+ + ++VYS E
Sbjct: 691 MKTIVEAAGGKVIGTKPAVNRVLASQQRQGSPRIFIITCESDVQMCADYASNNIDVYSAE 750

Query: 325 LVLQGVVTQALDFSRNR 275
+L GV+ Q +DF R
Sbjct: 751 FILTGVLCQKMDFDSYR 767


>tr|B8AXY3|B8AXY3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_18446 PE=4 SV=1
Length = 1525

Score = 48.9 bits (115), Expect = 1e-04
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = -3

Query: 424 REDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQGVVTQALDFSRNRLCEDYRQQRG 245
+E L+V++ E ETCS L +G V+ EL+L G+V Q L++ R+RL D +Q
Sbjct: 1137 KEVPDDLLVISCEDDYETCSPLLKRGASVFESELLLNGIVIQKLEYERHRLFSDCVKQTR 1196

Query: 244 SRR 236
S R
Sbjct: 1197 STR 1199


>tr|A7NW99|A7NW99_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019839001
PE=4 SV=1
Length = 909

Score = 48.9 bits (115), Expect = 1e-04
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = -3

Query: 493 LKAIVESAGGQIVD--ARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELV 320
+ ++V++ GQ V+ R+ L DD L++++ ++ C +L KG VYS EL+
Sbjct: 808 IASLVKAVDGQPVERIGRSVLKDGKFPDD--LLILSCDEDYAVCEPYLEKGAAVYSSELL 865

Query: 319 LQGVVTQALDFSRNRLCED 263
L G+VTQ L++ R++L D
Sbjct: 866 LNGIVTQKLEYERHQLFVD 884


>tr|A3AZX9|A3AZX9_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_016351 PE=4 SV=1
Length = 1516

Score = 48.9 bits (115), Expect = 1e-04
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = -3

Query: 424 REDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQGVVTQALDFSRNRLCEDYRQQRG 245
+E L+V++ E ETCS L +G V+ EL+L G+V Q L++ R+RL D +Q
Sbjct: 1122 KEVPDDLLVISCEDDYETCSPLLKRGASVFESELLLNGIVIQKLEYERHRLFSDCVKQTR 1181

Query: 244 SRR 236
S R
Sbjct: 1182 STR 1184