BP919134 |
Clone id |
YMU001_000121_F03 |
Library |
YMU01 |
Length |
513 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000121_F03. |
Accession |
BP919134 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTTTTTTGGAAGTAAGGATAAAAAGAAACTTCAATAGCATATTCTATGCACAGAT CTTACAAATCACCCTTCACCAACAAATAATGTAGTCTCTCTAGTGCTGGACACATTGAAC GTCTAATCGAAACATGACCATTGTGATTTATGACAAGATATACACACCCTACATCTCCTA TGGCAAAAGTTGTGCATGTTAAGTTCCGGCATGATTATACCCTCAAATTAACTGCTTTAG TTCATGTCCGTCTTGAACCTCTTTGTTGTCTATAATCCTCGCAAAGACGGTTCCTTGAGA AGTCCAAAGCCTGTGTGACAACTCCTTGCAGGACCAATTCCTCAGAGTACACCTCTAAAC CTTTCACAAGAAATTGACTACAAGTTTCCAAGCCTTTTTCATTAGCAACTACTACAAGAG GTTTGTCATCCTCTCTATCTGATTGTGATAAGCAAGTTCTTGCATCCACAATCTGACCAC CAGCACTTTCTACGATCGCTTTCAAGGCTGTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A0JNA8 |
Definition |
sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus |
Align length |
75 |
Score (bit) |
51.6 |
E-value |
2.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919134|Adiantum capillus-veneris mRNA, clone: YMU001_000121_F03. (501 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN... 52 2e-06 sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens ... 51 3e-06 sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus ... 50 4e-06 sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevi... 47 4e-05 sp|Q8K424|TRPV3_MOUSE Transient receptor potential cation channe... 32 1.7 sp|Q9HIX6|COBB_THEAC Probable cobyrinic acid A,C-diamide synthas... 31 2.8 sp|Q54VQ0|Y6442_DICDI Uncharacterized protein DDB_G0280205 OS=Di... 31 3.7 sp|Q8NET8|TRPV3_HUMAN Transient receptor potential cation channe... 30 4.9 sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2 30 8.2
>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN=PAXIP1 PE=2 SV=1 Length = 984
Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%) Frame = -3
Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332 + +KAIVE AGG+++ R + + +V+++ E L C ++ +G++V++ Sbjct: 904 STMKAIVECAGGKVLSRQPSFRKLMEHKQNKSLSEIVLISCENDLHLCREYFARGIDVHN 963
Query: 331 EELVLQGVVTQALDF 287 E VL GV+TQ LD+ Sbjct: 964 AEFVLTGVLTQTLDY 978
>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=1 Length = 1035
Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Frame = -3
Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332 + +KAIVE AGG+++ R + +++++ E L C ++ +G++V++ Sbjct: 955 STMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHN 1014
Query: 331 EELVLQGVVTQALDF 287 E VL GV+TQ LD+ Sbjct: 1015 AEFVLTGVLTQTLDY 1029
>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1 Length = 1056
Score = 50.4 bits (119), Expect = 4e-06 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Frame = -3
Query: 493 LKAIVESAGGQIV----DARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEE 326 +KAIVE AGG+++ R + + +++++ E L C ++ +G++V++ E Sbjct: 978 MKAIVECAGGKVLAKQPSFRKLMEHKQNKSLSEIILISCENDLHLCREYFARGIDVHNAE 1037
Query: 325 LVLQGVVTQALDF 287 VL GV+TQ LD+ Sbjct: 1038 FVLTGVLTQTLDY 1050
>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1 Length = 1256
Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Frame = -3
Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332 + +KAIVE AGG+I+ R + + +++++ E L C ++ ++V++ Sbjct: 1176 STMKAIVECAGGKILTKQPSFRKIMEHKQNKRLAEIILISCENDLHLCREYFAGSVDVHN 1235
Query: 331 EELVLQGVVTQALDF 287 E VL GV+TQALD+ Sbjct: 1236 AEFVLTGVLTQALDY 1250
>sp|Q8K424|TRPV3_MOUSE Transient receptor potential cation channel subfamily V member 3 OS=Mus musculus GN=Trpv3 PE=2 SV=2 Length = 791
Score = 32.0 bits (71), Expect = 1.7 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = +1
Query: 46 DLTNHPSPTNN-VVSLVLDTLNV*SKHDHCDL*QDIHT-LHLLWQKLCMLSSGMIIPSN* 219 DLTN + T+N V+ +++ N+ ++H+ L + +HT LH W+K + M S Sbjct: 391 DLTNVDTTTDNSVLEIIVYNTNIDNRHEMLTL-EPLHTLLHTKWKK---FAKYMFFLSFC 446
Query: 220 LL*FMSV-LNLFVVYNPRKDGSLRSP 294 F ++ L L Y PR+D L P Sbjct: 447 FYFFYNITLTLVSYYRPREDEDLPHP 472
>sp|Q9HIX6|COBB_THEAC Probable cobyrinic acid A,C-diamide synthase OS=Thermoplasma acidophilum GN=cobB PE=3 SV=1 Length = 443
Score = 31.2 bits (69), Expect = 2.8 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = -3
Query: 424 REDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQGVVTQALDFSRNRLCEDYRQQR 248 R P+V+V + G+ + +V G++ Y+ EL+ +VT+ S RL D +++ Sbjct: 110 RRTGTPIVLVIDGYGISATAAAIVSGIKAYAGELLRGVIVTRVSGESHYRLIRDAVEEK 168
>sp|Q54VQ0|Y6442_DICDI Uncharacterized protein DDB_G0280205 OS=Dictyostelium discoideum GN=DDB_G0280205 PE=4 SV=1 Length = 527
Score = 30.8 bits (68), Expect = 3.7 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = +3
Query: 306 TTPCRTNSSEYTSKPF-TRN*LQVSKPFSLATTTRGLSSSLSDCDKQVLASTI*PPALST 482 TTP R SS TS P + + +P +L +T + SSS S L+ST P +T Sbjct: 251 TTPTRRISSSTTSSPIGSTTTSALKRPSTLTSTPKSSSSSSSSSSSATLSSTKTPSTTAT 310
>sp|Q8NET8|TRPV3_HUMAN Transient receptor potential cation channel subfamily V member 3 OS=Homo sapiens GN=TRPV3 PE=1 SV=2 Length = 790
Score = 30.4 bits (67), Expect = 4.9 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +1
Query: 46 DLTNHPSPTNN-VVSLVLDTLNV*SKHDHCDL*QDIHTL-HLLWQKLCMLSSGMIIPSN* 219 DLTN + T+N V+ + + N+ ++H+ L + +HTL H+ W+K + M S Sbjct: 391 DLTNVDTTTDNSVLEITVYNTNIDNRHEMLTL-EPLHTLLHMKWKK---FAKHMFFLSFC 446
Query: 220 LL*FMSV-LNLFVVYNPRKDGSLRSP 294 F ++ L L Y PR++ ++ P Sbjct: 447 FYFFYNITLTLVSYYRPREEEAIPHP 472
>sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2 Length = 2541
Score = 29.6 bits (65), Expect = 8.2 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +3
Query: 300 CVTTPCRTNSSEYTSKPFTRN*L-QVSKPFSLATTTRGLSSSLS 428 CVTT +S YTS P T+ + V+ +S+ TT +G S+ S Sbjct: 145 CVTTTQVAFTSSYTSTPVTQKPVTTVTSTYSMTTTEKGTSAMTS 188
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SN61 |
Definition |
tr|A9SN61|A9SN61_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
82 |
Score (bit) |
63.9 |
E-value |
4.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919134|Adiantum capillus-veneris mRNA, clone: YMU001_000121_F03. (501 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SN61|A9SN61_PHYPA Predicted protein OS=Physcomitrella paten... 64 4e-09 tr|A9THM3|A9THM3_PHYPA Predicted protein OS=Physcomitrella paten... 55 2e-06 tr|Q5JLP9|Q5JLP9_ORYSJ cDNA clone:J033024C23, full insert sequen... 51 3e-05 tr|B4DEQ6|B4DEQ6_HUMAN cDNA FLJ58501, highly similar to Homo sap... 50 5e-05 tr|Q9LVF7|Q9LVF7_ARATH Gb|AAD14441.1 (At3g21480 protein) OS=Arab... 50 6e-05 tr|B4FCX5|B4FCX5_MAIZE Putative uncharacterized protein OS=Zea m... 50 8e-05 tr|B6NAW1|B6NAW1_BRAFL Putative uncharacterized protein OS=Branc... 49 1e-04 tr|B8AXY3|B8AXY3_ORYSI Putative uncharacterized protein OS=Oryza... 49 1e-04 tr|A7NW99|A7NW99_VITVI Chromosome chr5 scaffold_2, whole genome ... 49 1e-04 tr|A3AZX9|A3AZX9_ORYSJ Putative uncharacterized protein OS=Oryza... 49 1e-04 tr|A3A1D7|A3A1D7_ORYSJ Putative uncharacterized protein OS=Oryza... 49 1e-04 tr|B6LSW2|B6LSW2_BRAFL Putative uncharacterized protein OS=Branc... 49 1e-04 tr|B8A975|B8A975_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04 tr|Q6DDH5|Q6DDH5_XENLA K14 protein OS=Xenopus laevis GN=paxip1 P... 47 4e-04 tr|B4F8P1|B4F8P1_MAIZE Putative uncharacterized protein OS=Zea m... 46 8e-04 tr|B8AXY2|B8AXY2_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.18 tr|A0BE30|A0BE30_PARTE Chromosome undetermined scaffold_101, who... 35 1.5 tr|A0D393|A0D393_PARTE Chromosome undetermined scaffold_36, whol... 35 2.0 tr|A0DD18|A0DD18_PARTE Chromosome undetermined scaffold_46, whol... 33 5.7 tr|B4P033|B4P033_DROYA GE18981 OS=Drosophila yakuba GN=GE18981 P... 33 9.7
>tr|A9SN61|A9SN61_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165809 PE=4 SV=1 Length = 1369
Score = 63.9 bits (154), Expect = 4e-09 Identities = 30/82 (36%), Positives = 54/82 (65%) Frame = -3
Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314 L +IV +AGGQ+V+ + D +++ +V+ANE +++C+ L +G +VY EL+L Sbjct: 1287 LTSIVHAAGGQVVEEYKGPAPPDSQNEGFCIVLANEDDMDSCAPLLEQGAKVYKPELILS 1346
Query: 313 GVVTQALDFSRNRLCEDYRQQR 248 G+++ L+FS++ L E+YR R Sbjct: 1347 GIISHHLEFSKHLLFENYRGGR 1368
>tr|A9THM3|A9THM3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170121 PE=4 SV=1 Length = 1593
Score = 54.7 bits (130), Expect = 2e-06 Identities = 26/72 (36%), Positives = 45/72 (62%) Frame = -3
Query: 496 ALKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVL 317 A+ AI+ +AGGQ+V+ + + +D +V+ANE + C FL +G +VY EL+L Sbjct: 1386 AIAAIIHAAGGQVVEEYEGPAPESQNEDY-CIVLANENDRDICVPFLERGAKVYKSELIL 1444
Query: 316 QGVVTQALDFSR 281 G+++ L+FS+ Sbjct: 1445 SGIISHHLEFSK 1456
>tr|Q5JLP9|Q5JLP9_ORYSJ cDNA clone:J033024C23, full insert sequence OS=Oryza sativa subsp. japonica GN=B1150F11.13 PE=2 SV=1 Length = 671
Score = 51.2 bits (121), Expect = 3e-05 Identities = 27/74 (36%), Positives = 44/74 (59%) Frame = -3
Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314 LK++V +A G++++ R +S+ V++ E+ + C F+ G EV+ ELVL Sbjct: 596 LKSLVVTAHGKVLE-RNAMSKMKNRSLMGAFVISCEQDYKICVPFIKNGFEVFESELVLN 654
Query: 313 GVVTQALDFSRNRL 272 G+VTQ L+F R RL Sbjct: 655 GIVTQKLEFERYRL 668
>tr|B4DEQ6|B4DEQ6_HUMAN cDNA FLJ58501, highly similar to Homo sapiens PAX interacting (with transcription-activation domain) protein 1 (PAXIP1), mRNA OS=Homo sapiens PE=2 SV=1 Length = 1022
Score = 50.4 bits (119), Expect = 5e-05 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Frame = -3
Query: 499 TALKAIVESAGGQIVDA----RTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYS 332 + +KAIVE AGG+++ R + +++++ E L C ++ +G++V++ Sbjct: 942 STMKAIVECAGGKVLSKQPSFRKLVEHKQNSSLSEIILISCENDLHLCREYFARGIDVHN 1001
Query: 331 EELVLQGVVTQALDF 287 E VL GV+TQ LD+ Sbjct: 1002 AEFVLTGVLTQTLDY 1016
>tr|Q9LVF7|Q9LVF7_ARATH Gb|AAD14441.1 (At3g21480 protein) OS=Arabidopsis thaliana GN=At3g21480 PE=2 SV=1 Length = 1041
Score = 50.1 bits (118), Expect = 6e-05 Identities = 28/78 (35%), Positives = 46/78 (58%) Frame = -3
Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314 + +V++ G V+ S S+ + + L+V++ E+ C FL +G EVYS EL+L Sbjct: 942 ITTLVKAVHGLPVERLGRSSLSEDKVPENLLVLSCEEDRAICIPFLERGAEVYSSELLLN 1001
Query: 313 GVVTQALDFSRNRLCEDY 260 G+VTQ L++ R RL D+ Sbjct: 1002 GIVTQRLEYERYRLFTDH 1019
>tr|B4FCX5|B4FCX5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 292
Score = 49.7 bits (117), Expect = 8e-05 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Frame = -3
Query: 493 LKAIVESAGGQIVDARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQ 314 + ++V+S+ GQ ++ + L+V++ E+ E C+ L KG V+S EL+L Sbjct: 188 MTSLVKSSSGQPLERVGRSIMEGKGVPPDLLVISCEEDYEACAPLLEKGASVFSVELLLN 247
Query: 313 GVVTQALDFSRNRLCED-YRQQRGSR 239 G+V Q L++ R+RL D +Q R SR Sbjct: 248 GIVIQKLEYERHRLFMDRVKQTRSSR 273
>tr|B6NAW1|B6NAW1_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_126794 PE=4 SV=1 Length = 768
Score = 49.3 bits (116), Expect = 1e-04 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Frame = -3
Query: 493 LKAIVESAGGQIVDARTC----LSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEE 326 +K IVE+AGG+++ + L+ R+ + ++ E ++ C+ + ++VYS E Sbjct: 691 MKTIVEAAGGKVIGTKPAVNRVLASQQRQGSPRIFIITCESDVQMCADYASNNIDVYSAE 750
Query: 325 LVLQGVVTQALDFSRNR 275 +L GV+ Q +DF R Sbjct: 751 FILTGVLCQKMDFDSYR 767
>tr|B8AXY3|B8AXY3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18446 PE=4 SV=1 Length = 1525
Score = 48.9 bits (115), Expect = 1e-04 Identities = 25/63 (39%), Positives = 37/63 (58%) Frame = -3
Query: 424 REDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQGVVTQALDFSRNRLCEDYRQQRG 245 +E L+V++ E ETCS L +G V+ EL+L G+V Q L++ R+RL D +Q Sbjct: 1137 KEVPDDLLVISCEDDYETCSPLLKRGASVFESELLLNGIVIQKLEYERHRLFSDCVKQTR 1196
Query: 244 SRR 236 S R Sbjct: 1197 STR 1199
>tr|A7NW99|A7NW99_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019839001 PE=4 SV=1 Length = 909
Score = 48.9 bits (115), Expect = 1e-04 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Frame = -3
Query: 493 LKAIVESAGGQIVD--ARTCLSQSDREDDKPLVVVANEKGLETCSQFLVKGLEVYSEELV 320 + ++V++ GQ V+ R+ L DD L++++ ++ C +L KG VYS EL+ Sbjct: 808 IASLVKAVDGQPVERIGRSVLKDGKFPDD--LLILSCDEDYAVCEPYLEKGAAVYSSELL 865
Query: 319 LQGVVTQALDFSRNRLCED 263 L G+VTQ L++ R++L D Sbjct: 866 LNGIVTQKLEYERHQLFVD 884
>tr|A3AZX9|A3AZX9_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_016351 PE=4 SV=1 Length = 1516
Score = 48.9 bits (115), Expect = 1e-04 Identities = 25/63 (39%), Positives = 37/63 (58%) Frame = -3
Query: 424 REDDKPLVVVANEKGLETCSQFLVKGLEVYSEELVLQGVVTQALDFSRNRLCEDYRQQRG 245 +E L+V++ E ETCS L +G V+ EL+L G+V Q L++ R+RL D +Q Sbjct: 1122 KEVPDDLLVISCEDDYETCSPLLKRGASVFESELLLNGIVIQKLEYERHRLFSDCVKQTR 1181
Query: 244 SRR 236 S R Sbjct: 1182 STR 1184
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