BP919147 |
Clone id |
YMU001_000121_G05 |
Library |
YMU01 |
Length |
541 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000121_G05. |
Accession |
BP919147 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1319Contig1 |
Sequence |
CACAGGGAACGTGGCCCTGGAACGCTGTTCTTGAATAGGAAACCTGTTCCCCTTGCTCCC TCTCTCTGGGAAGTCCCTATTTTCTTGGTCCAGACAGCTTTGTTTCTTAACCTGTTGGTG GACAAGGCTGCCTCGCCTTATGGTAAGTAAACTGTGTGTGTGTTGGTAAGGACATCCGCT ACCACAACTCTTTCTGCCCGGTTTCCTACTCAGTTCCCACCTTTGCTAGCAGACACTAGA CAAACGGGTTTCCTCTAGGTCTTTTGGCTTTCCTTTCTTCGCCTTTAGGTTCGGTTGATG ACCCTCTTTTAGAACTTTGCAGCTGATTCCCTTTTGGCGTGTTGCCTTTGCCTCACCTGT TTTGTCCTCCCTTCTCCTCTGGCAGTCCTTTAGCAGCTTCTGGGAGCATGGGCTGAGCTG TTATGGGAGTTCCTTCTATGTGTCTAGATTGGTGAGTCCTGGTCATCTCTACTTTTGTCG GGCATCGATTGCAGTTTACATGGTTTGCTAGTTGTTCACTCCTCCCACTGTCATCTTCTA T |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P05006 |
Definition |
sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus |
Align length |
53 |
Score (bit) |
33.9 |
E-value |
0.53 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919147|Adiantum capillus-veneris mRNA, clone: YMU001_000121_G05. (541 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus PE=3 ... 34 0.53 sp|P05005|IFNA3_HORSE Interferon alpha-3 OS=Equus caballus PE=3 ... 34 0.53 sp|P05004|IFNA2_HORSE Interferon alpha-2 OS=Equus caballus PE=3 ... 34 0.53 sp|P01570|IFN14_HUMAN Interferon alpha-14 OS=Homo sapiens GN=IFN... 33 0.69 sp|P01562|IFNA1_HUMAN Interferon alpha-1/13 OS=Homo sapiens GN=I... 33 0.90 sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo... 33 1.2 sp|P05003|IFNA1_HORSE Interferon alpha-1 OS=Equus caballus PE=3 ... 32 1.5 sp|P49877|IFNAG_BOVIN Interferon alpha-G OS=Bos taurus GN=IFNAG ... 32 2.6 sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=... 31 3.4 sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=... 31 3.4 sp|O60174|SFC6_SCHPO Transcription factor tau subunit sfc6 OS=Sc... 31 3.4 sp|P49878|IFNAH_BOVIN Interferon alpha-H OS=Bos taurus GN=IFNAH ... 31 4.5 sp|P05008|IFNAB_BOVIN Interferon alpha-B OS=Bos taurus GN=IFNAB ... 31 4.5 sp|Q01RU9|FPG_SOLUE Formamidopyrimidine-DNA glycosylase OS=Solib... 31 4.5 sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 OS=Homo sapiens... 30 5.7 sp|A1R516|IF2_ARTAT Translation initiation factor IF-2 OS=Arthro... 30 5.8 sp|Q1QH69|ENGB_NITHX Probable GTP-binding protein engB OS=Nitrob... 30 5.8 sp|P05009|IFNAC_BOVIN Interferon alpha-C OS=Bos taurus GN=IFNAC ... 30 7.6 sp|Q8NFC6|FA44A_HUMAN Protein FAM44A OS=Homo sapiens GN=FAM44A P... 30 7.6 sp|P05010|IFNAD_BOVIN Interferon alpha-D OS=Bos taurus GN=IFNAD ... 30 9.9 sp|P05007|IFNAA_BOVIN Interferon alpha-A OS=Bos taurus GN=IFNAA ... 30 9.9 sp|P07348|IFNA1_BOVIN Interferon alpha-1 OS=Bos taurus PE=3 SV=1 30 9.9 sp|O42924|EAF7_SCHPO Probable chromatin modification-related pro... 30 9.9
>sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 33.9 bits (76), Expect = 0.53 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -2
Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 SC GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 19 SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|P05005|IFNA3_HORSE Interferon alpha-3 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 33.9 bits (76), Expect = 0.53 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -2
Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 SC GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 19 SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|P05004|IFNA2_HORSE Interferon alpha-2 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 33.9 bits (76), Expect = 0.53 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -2
Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 SC GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 19 SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|P01570|IFN14_HUMAN Interferon alpha-14 OS=Homo sapiens GN=IFNA14 PE=1 SV=3 Length = 189
Score = 33.5 bits (75), Expect = 0.69 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -2
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + +FP+ GN+F Sbjct: 17 KSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFEFPQEEFDGNQF 71
>sp|P01562|IFNA1_HUMAN Interferon alpha-1/13 OS=Homo sapiens GN=IFNA1 PE=1 SV=1 Length = 189
Score = 33.1 bits (74), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -2
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 17 KSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQF 71
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1 Length = 1045
Score = 32.7 bits (73), Expect = 1.2 Identities = 21/66 (31%), Positives = 29/66 (43%) Frame = -1
Query: 460 RTHQSRHIEGTPITAQPMLPEAAKGLPEEKGGQNR*GKGNTPKGNQLQSSKRGSSTEPKG 281 R +++RH+EGT AQP A+K + GN + S R S E K Sbjct: 796 RKYKTRHLEGTNEVAQPSREFASKAKDSHYQKSSSKLDGNYKNESDTFSDSRSSDRETKH 855
Query: 280 EERKAK 263 + RK K Sbjct: 856 KRRKRK 861
>sp|P05003|IFNA1_HORSE Interferon alpha-1 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 32.3 bits (72), Expect = 1.5 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -2
Query: 186 CGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 C GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 20 CSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|P49877|IFNAG_BOVIN Interferon alpha-G OS=Bos taurus GN=IFNAG PE=2 SV=1 Length = 189
Score = 31.6 bits (70), Expect = 2.6 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -2
Query: 186 CGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNR 43 C GC HTHSL R +L+ Q +V SCL D+ + FP+ G++ Sbjct: 20 CSLGCHLPHTHSLANRRVLTLLRQLRRVSPSSCLQDRNDFAFPQEALGGSQ 70
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1 Length = 518
Score = 31.2 bits (69), Expect = 3.4 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Frame = +3
Query: 150 NCVCVGKDIRYHNSFCPVSYSVPTFASRH*TNGFPL---------------GLLAFLSS- 281 N V V + H PVSY+V T A +G PL G S Sbjct: 184 NAVMVDIHDQLHQGTVPVSYTVTTVA----PHGLPLCTGQHIPACSTQQVPGCSVVFSGQ 239
Query: 282 --PLGSVDDPLLELCS*FPFGVLPLPHLFCPPFSSGSP 389 P+ SV P+L+ CS LP+P+ PP S P Sbjct: 240 HLPVCSVPPPMLQACS---VQHLPVPYAAFPPLISSDP 274
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4 Length = 515
Score = 31.2 bits (69), Expect = 3.4 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Frame = +3
Query: 150 NCVCVGKDIRYHNSFCPVSYSVPTFASRH*TNGFPL---------------GLLAFLSS- 281 N V V + H PVSY+V T A +G PL G S Sbjct: 181 NAVMVDIHDQLHQGTVPVSYTVTTVA----PHGIPLCTGQHIPACSTQQVPGCSVVFSGQ 236
Query: 282 --PLGSVDDPLLELCS*FPFGVLPLPHLFCPPFSSGSP 389 P+ SV P+L+ CS LP+P+ PP S P Sbjct: 237 HLPVCSVPPPMLQACS---VQHLPVPYAAFPPLISSDP 271
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5K4S8 |
Definition |
tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasmodium vivax |
Align length |
137 |
Score (bit) |
41.2 |
E-value |
0.036 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919147|Adiantum capillus-veneris mRNA, clone: YMU001_000121_G05. (541 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasm... 41 0.036 tr|B6MMT0|B6MMT0_BRAFL Putative uncharacterized protein OS=Branc... 37 0.88 tr|Q95J78|Q95J78_SAGOE Interferon-alpha OS=Saguinus oedipus GN=i... 36 1.5 tr|Q1PCX2|Q1PCX2_CERAE Interferon alpha (Fragment) OS=Cercopithe... 35 2.6 tr|A6GH03|A6GH03_9DELT ErfK/YbiS/YcfS/YnhG family protein OS=Ple... 35 3.3 tr|B6CK04|B6CK04_MACMU Interferon alpha 1 OS=Macaca mulatta PE=4... 34 4.4 tr|B6KBH5|B6KBH5_TOXGO Zinc finger (C2H2 type) protein, putative... 34 4.4 tr|B6CK09|B6CK09_CERTO Interferon alpha 1 OS=Cercocebus torquatu... 34 5.7 tr|B6CK05|B6CK05_CERTO Interferon alpha 1 OS=Cercocebus torquatu... 34 5.7 tr|Q034A9|Q034A9_LACC3 Permease of the major facilitator superfa... 33 7.4 tr|B3WBB4|B3WBB4_LACCB Permease of the major facilitator superfa... 33 7.4 tr|B6CK06|B6CK06_CERTO Interferon alpha 1 OS=Cercocebus torquatu... 33 7.4 tr|B8J2A9|B8J2A9_DESDE Putative uncharacterized protein OS=Desul... 33 9.5
>tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasmodium vivax GN=PVX_091955 PE=4 SV=1 Length = 1057
Score = 41.2 bits (95), Expect = 0.036 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 8/137 (5%) Frame = -2
Query: 402 QKLLKDCQRRREDKTGEAKATRQKGISCKVLKEGHQPNL--KAKKGKPKDLEETRLSSVC 229 +K K + R+ K ++K + KG K K + + K+KK K K ++T+ + V Sbjct: 881 RKEAKKKSKERKSKGEKSKREKSKGEKSKREKSKGEKSKREKSKKEKSKKTKKTKPTKVK 940
Query: 228 *QRWELSRKPGRKSCGSGCPYQHTHSLLTIRRGSLVHQQVK------KQSCLDQENRDFP 67 ++ + ++ K G PY H HS R S V V+ + S +D+ + F Sbjct: 941 PKKVKPTKMKSPKKTHDGTPYSHRHS---SRSRSSVGSSVESSRSHSESSSMDKSMKHFS 997
Query: 66 ERGSKGNRFPIQEQRSR 16 +GSKG +R R Sbjct: 998 AKGSKGKAHKRDARRRR 1014
>tr|B6MMT0|B6MMT0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_123838 PE=4 SV=1 Length = 569
Score = 36.6 bits (83), Expect = 0.88 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Frame = -2
Query: 414 SPCSQKLLKDCQRRREDKTGEAKATRQKGISCKVLKEGHQPNLKAKKGKPKDLEETRLSS 235 SP + LK RRR + G A+ +R + + + +KG+PKD ++R S Sbjct: 170 SPEGRHRLKSPDRRRRSRDG-ARGSRDSPV--------RRSSRDWEKGRPKDRRDSRRSP 220
Query: 234 VC*QRWELSRKPGRKSCGSGCPYQHT----HSLLTIRRGSLVHQQVKKQSCLDQENRDFP 67 +R SR P R GS +HT SL R S H+ K +S + + P Sbjct: 221 DRRRRRSHSRSPPRLKSGS---KKHTKSRSRSLSPARSKSPHHRGSKSRSRSPRRHSRSP 277
Query: 66 ERGSKGNRFPIQEQRSRATF 7 K +R P + RSR+ F Sbjct: 278 H---KQSRSPRRRSRSRSPF 294
>tr|Q95J78|Q95J78_SAGOE Interferon-alpha OS=Saguinus oedipus GN=ifn-alpha PE=3 SV=1 Length = 189
Score = 35.8 bits (81), Expect = 1.5 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -2
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRFPIQEQ 25 + SC GC THSL R L+ Q ++ SCL D+ + +FP+ GN+F Q Sbjct: 17 KSSCSLGCDLPQTHSLGNRRTLMLLAQMRRISPFSCLKDRRDFEFPQEEFDGNQF----Q 72
Query: 24 RSRATF 7 ++RA F Sbjct: 73 KARAIF 78
>tr|Q1PCX2|Q1PCX2_CERAE Interferon alpha (Fragment) OS=Cercopithecus aethiops PE=2 SV=1 Length = 74
Score = 35.0 bits (79), Expect = 2.6 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = -2
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCLDQENR--DFPERGSKGNRF 40 + C GC THSL R L+ Q ++ SC D +N DFP++ GN+F Sbjct: 17 KSGCSLGCDLPETHSLDNRRTMMLLKQMSRISPSSCSDGQNMTLDFPQQEFDGNQF 72
>tr|A6GH03|A6GH03_9DELT ErfK/YbiS/YcfS/YnhG family protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_31038 PE=4 SV=1 Length = 619
Score = 34.7 bits (78), Expect = 3.3 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Frame = -1
Query: 487 RCPTKVEMTRTHQSRHIEGTPITAQPMLPEAAKGLPEEKGGQNR*GKGNTPKGNQLQSSK 308 R PTK E T + R I + T +P+ E P E GG G G Sbjct: 210 RAPTKEEYVETQERRAILESERTGEPLPGEEPAPSPGEGGGDGGAAAGGDGGGEAAAGDG 269
Query: 307 RGSS-TEPKGEERKAKRPRGNP 245 G + P GEE A P P Sbjct: 270 GGEALPAPDGEEAPAPEPAPEP 291
>tr|B6CK04|B6CK04_MACMU Interferon alpha 1 OS=Macaca mulatta PE=4 SV=1 Length = 189
Score = 34.3 bits (77), Expect = 4.4 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -2
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + FP++ GN+F Sbjct: 17 KSSCSLGCDLPETHSLDNRRTMMLLKQMSRISPSSCLMDRHDFGFPQQEFDGNQF 71
>tr|B6KBH5|B6KBH5_TOXGO Zinc finger (C2H2 type) protein, putative OS=Toxoplasma gondii ME49 GN=TGME49_059650 PE=4 SV=1 Length = 397
Score = 34.3 bits (77), Expect = 4.4 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Frame = -1
Query: 535 DDSGRSEQLANHVNCNRCPTKVEMTRTHQSRHIEGTPITAQPMLPEAAKGLPEEKGGQNR 356 ++ + + H C CP K+ + RH++ + E G+P+E+ +++ Sbjct: 203 EEESQEQNFRGHFQCKLCPKKIFIFEADLERHLQSKKHLRREAEWEKEHGVPQEQEEESK 262
Query: 355 -------*GKGNTPKG-NQLQSSKRGSSTEPKGEERKAKRPRGNPF 242 K KG ++ S G S + ++K R +G+ F Sbjct: 263 ERASASSSTKERRKKGIKSVEESDSGPSPSSRRSQKKGSRSQGDEF 308
>tr|B6CK09|B6CK09_CERTO Interferon alpha 1 OS=Cercocebus torquatus atys PE=4 SV=1 Length = 189
Score = 33.9 bits (76), Expect = 5.7 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -2
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + FP++ GN+F Sbjct: 17 KSSCSLGCDLPETHSLDNRRTMMLLAQMSRISPSSCLMDRHDFGFPQQEFDGNQF 71
>tr|B6CK05|B6CK05_CERTO Interferon alpha 1 OS=Cercocebus torquatus atys PE=4 SV=1 Length = 189
Score = 33.9 bits (76), Expect = 5.7 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -2
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + FP++ GN+F Sbjct: 17 KSSCSLGCDLPETHSLDNRRTMMLLAQMSRISPSSCLMDRHDFGFPQQEFDGNQF 71
>tr|Q034A9|Q034A9_LACC3 Permease of the major facilitator superfamily OS=Lactobacillus casei (strain ATCC 334) GN=LSEI_2749 PE=4 SV=1 Length = 400
Score = 33.5 bits (75), Expect = 7.4 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +1
Query: 82 FLVQTALFLNLLVDKAASPYGK*TVCVLVRTSATTTLSARFPTQFPPLLADTRQTGF 252 FLV ++F L+ +K A +GK TV + +A + + F T P LL GF Sbjct: 259 FLVLCSIFSGLIFEKIAKWFGKYTVTIFYIITAISMIVMSFTTSIPVLLVLVLAAGF 315
|