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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919154
Clone id YMU001_000121_H01
Library
Length 347
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCATTATATGAATAATGGGGTTTGCTACTTATGGTGGGATTTGGGTATTGTTTTAGATCT
ATCTTAAGTACATACTTCTGGAATCCCGATGTTATTTCGTGCTGCCCTCTCAGCCCTTCC
AACACTTATCCGATTCCTTTTTTCGTGAAGGGAGCGAGCTAACTCCCTTCCCTTGGCTCA
GGCGACGTTTAGTTACGTTACGACATTACACAAGGCATCCCCGACCGGCAAACAAAACAC
AGGAACCCCTCCGCTCCGCGAAGATAACTAAACTACAATTTGTCATTCGATACCTTGTCC
CGGTTTTCTCTGCATCGATTTGAAAACGGTCTAGTCGCATATATCAC
■■Homology search results ■■ -
sp_hit_id P35721
Definition sp|P35721|C560_MARPO Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia polymorpha
Align length 44
Score (bit) 50.4
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919154|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_H01.
         (347 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35721|C560_MARPO Succinate dehydrogenase cytochrome b560 sub...    50   3e-06
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 sub...    34   0.26 
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 sub...    33   0.34 
sp|A4WMH5|RL3_PYRAR 50S ribosomal protein L3P OS=Pyrobaculum ars...    31   2.2  
sp|P12488|ENV_HV1BN Envelope glycoprotein gp160 OS=Human immunod...    30   4.8  
sp|Q8ZW52|RL3_PYRAE 50S ribosomal protein L3P OS=Pyrobaculum aer...    29   6.3  
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 sub...    29   6.3  

>sp|P35721|C560_MARPO Succinate dehydrogenase cytochrome b560
           subunit OS=Marchantia polymorpha GN=SDH3 PE=3 SV=1
          Length = 137

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSALPTLIR 133
           ++M+NGV +L WDLG  L+LS V+TSGI MLF AA  AL  +IR
Sbjct: 84  YHMSNGVRHLLWDLGFFLELSKVYTSGIIMLFCAAFLALLNIIR 127


>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560
           subunit, mitochondrial OS=Cricetulus griseus GN=SDHC
           PE=2 SV=1
          Length = 169

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +2

Query: 14  NGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSAL 118
           NG+ +L WDLG  L +S V+ SG+ +L  A LS++
Sbjct: 130 NGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSSV 164


>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560
           subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2
          Length = 169

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 14  NGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSAL 118
           NG+ +L WDLG  L +S +H SG+ +L    LS++
Sbjct: 130 NGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSSV 164


>sp|A4WMH5|RL3_PYRAR 50S ribosomal protein L3P OS=Pyrobaculum
           arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3
           SV=1
          Length = 338

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 171 PWLRRRLVTLRHYTRHPRPANKTQEP 248
           P  R+RLV LRH  R PR A  T EP
Sbjct: 303 PGARKRLVVLRHPARPPRRAPPTTEP 328


>sp|P12488|ENV_HV1BN Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate BRVA group M
           subtype B) GN=env PE=1 SV=1
          Length = 852

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 343 YMRLDRFQIDAEKTGTRYRMTNCSLVIFAE 254
           + +LD   ID +KT TRYR+ +C+  +  +
Sbjct: 174 FYKLDIVPIDNDKTNTRYRLISCNTSVITQ 203


>sp|Q8ZW52|RL3_PYRAE 50S ribosomal protein L3P OS=Pyrobaculum
           aerophilum GN=rpl3p PE=3 SV=1
          Length = 338

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 PWLRRRLVTLRHYTRHPRPANKTQEP 248
           P  R+RLV LRH  R PR A    EP
Sbjct: 303 PGARKRLVVLRHPVRPPRKAPPAAEP 328


>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560
           subunit, mitochondrial OS=Homo sapiens GN=SDHC PE=1 SV=1
          Length = 169

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 14  NGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSAL 118
           NG+ +L WDLG  L +  ++ SG+ +L    LS++
Sbjct: 130 NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSM 164
tr_hit_id Q1XGB9
Definition tr|Q1XGB9|Q1XGB9_PHYPA Succinate dehydrogenase subunit 3 OS=Physcomitrella patens
Align length 48
Score (bit) 55.5
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919154|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_H01.
         (347 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XGB9|Q1XGB9_PHYPA Succinate dehydrogenase subunit 3 OS=Phys...    55   1e-06
tr|Q7YAK7|Q7YAK7_CHAVU Succinate:cytochrome c oxidoreductase sub...    45   0.002
tr|A6YE87|A6YE87_CHLAT Succinate:cytochrome c oxidoreductase sub...    42   0.012
tr|Q8M1H1|Q8M1H1_CHAGL Succinate:cytochrome c oxidoreductase sub...    42   0.020
tr|Q2GFS4|Q2GFS4_EHRCR Succinate dehydrogenase, cytochrome b556 ...    36   1.1  
tr|Q8VS00|Q8VS00_EHRCH Succinate dehydrogenase subunit C OS=Ehrl...    36   1.1  
tr|Q40JA5|Q40JA5_EHRCH Succinate dehydrogenase, cytochrome b sub...    36   1.1  
tr|Q641Z9|Q641Z9_RAT Succinate dehydrogenase complex, subunit C,...    33   5.4  
tr|B6HQ32|B6HQ32_PENCH Putative uncharacterized protein Pc22g199...    33   5.4  
tr|Q8IB16|Q8IB16_PLAF7 Putative uncharacterized protein MAL8P1.7...    33   7.1  

>tr|Q1XGB9|Q1XGB9_PHYPA Succinate dehydrogenase subunit 3
           OS=Physcomitrella patens GN=sdh3 PE=4 SV=1
          Length = 131

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 27/48 (56%), Positives = 36/48 (75%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSALPTLIRFLFS 145
           ++M+NG+ +L WDLG  L+LS V+TSGI MLF AA  A+  +IRF FS
Sbjct: 84  YHMSNGIRHLLWDLGFFLELSKVYTSGIIMLFCAAFLAVSNIIRFYFS 131


>tr|Q7YAK7|Q7YAK7_CHAVU Succinate:cytochrome c oxidoreductase
           subunit 3 OS=Chara vulgaris GN=sdh3 PE=4 SV=1
          Length = 131

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSALPTLIRFLFS 145
           ++M+NG+ +L WDLG  LDLS V+TSG  M F AA      ++RF  S
Sbjct: 84  YHMSNGIRHLLWDLGHSLDLSKVYTSGTIMFFFAACLVTLNILRFSLS 131


>tr|A6YE87|A6YE87_CHLAT Succinate:cytochrome c oxidoreductase
           subunit 3 OS=Chlorokybus atmophyticus GN=sdh3 PE=4 SV=1
          Length = 133

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/48 (39%), Positives = 34/48 (70%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSALPTLIRFLFS 145
           ++M+NG+ +L WDLG+ LD++ V++SG  +L    +  +  L+RFL+S
Sbjct: 86  YHMSNGLRHLTWDLGLSLDIAKVYSSGRFVLVGGTILLIINLLRFLYS 133


>tr|Q8M1H1|Q8M1H1_CHAGL Succinate:cytochrome c oxidoreductase
           subunit 3 OS=Chaetosphaeridium globosum GN=sdh3 PE=4
           SV=1
          Length = 129

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSALPTLIRFL 139
           ++M+NG+ +L WD G+ LDLS V+ SG+ ML  A    +  LIR +
Sbjct: 84  YHMSNGIRHLLWDYGLFLDLSKVYFSGVFMLIVAVSLVILNLIRII 129


>tr|Q2GFS4|Q2GFS4_EHRCR Succinate dehydrogenase, cytochrome b556
           subunit OS=Ehrlichia chaffeensis (strain Arkansas)
           GN=sdhC PE=4 SV=1
          Length = 128

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSA 115
           HYMN G+ +++WDLG+ L  S V T+G+ ++F   +S+
Sbjct: 83  HYMN-GIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSS 119


>tr|Q8VS00|Q8VS00_EHRCH Succinate dehydrogenase subunit C
           OS=Ehrlichia chaffeensis GN=sdhC PE=4 SV=1
          Length = 128

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSA 115
           HYMN G+ +++WDLG+ L  S V T+G+ ++F   +S+
Sbjct: 83  HYMN-GIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSS 119


>tr|Q40JA5|Q40JA5_EHRCH Succinate dehydrogenase, cytochrome b
           subunit OS=Ehrlichia chaffeensis str. Sapulpa
           GN=EchaDRAFT_0353 PE=4 SV=1
          Length = 128

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +2

Query: 2   HYMNNGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSA 115
           HYMN G+ +++WDLG+ L  S V T+G+ ++F   +S+
Sbjct: 83  HYMN-GIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSS 119


>tr|Q641Z9|Q641Z9_RAT Succinate dehydrogenase complex, subunit C,
           integral membrane protein OS=Rattus norvegicus GN=Sdhc
           PE=2 SV=1
          Length = 169

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 14  NGVCYLWWDLGIVLDLS*VHTSGIPMLFRAALSA 115
           NGV +L WDLG  L +S V  SG+ +L  A LS+
Sbjct: 130 NGVRHLMWDLGKGLSISQVQLSGVTVLVLAVLSS 163


>tr|B6HQ32|B6HQ32_PENCH Putative uncharacterized protein Pc22g19900
           OS=Penicillium chrysogenum Wisconsin 54-1255
           GN=Pc22g19900 PE=4 SV=1
          Length = 338

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 212 KASPTGKQNTGTPPLREDN*TTICHSIPCPG 304
           +A PTG   + +PPL  +   T+C+ IP PG
Sbjct: 220 RAKPTGNNISASPPLSTNTDATLCNPIPLPG 250


>tr|Q8IB16|Q8IB16_PLAF7 Putative uncharacterized protein MAL8P1.70
           OS=Plasmodium falciparum (isolate 3D7) GN=MAL8P1.70 PE=4
           SV=1
          Length = 520

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -1

Query: 122 LEGLRGQHEITSGFQKYVLKIDLKQYPNPTISSKPHY 12
           L GL  Q +I   F  Y  KID+  YPN TI SK  Y
Sbjct: 157 LHGLAEQRKIKEYFIPYSNKIDIPAYPNVTIVSKIQY 193