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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919163
Clone id YMU001_000121_H11
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000121_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACACAGGCTCAAATAAATGATTGTCAAAATTATCGTACCTCTACACAGAGCAATGAGTA
TGAAGCCCTCAAGAGTATCAACTTCATATAATCTTGGAAGGCTTTCTGGTATGTCCTCTT
TCCACAAGTATGAAAAAGAAAACGACGAGCACATCAAATCATGATGGTCGTCTCCTGCAC
CAACGTAATAGCCTGAACATTGCATGCCTTCCGCTTTCACAATGAGCACATAATAATGAC
AGAATAGATCTTCAAGGCCAACACTTCTGTATACAGGACAACAAATCCAGATGCCAAAGT
AGGGAAAAAGTTGCATTTGGCGATGAAAGCATGCAACTTTCTTTGTGACTCTTTAAAACC
CTTTCATTGACTTGCAGACGACAAGCCCTTGGGCGTCCTGCCTTTACAACTGTCCCAAAT
GGCAACAAATGCCCAGAAGTAGCAAGTAGAACATTAGCCTTTGGCTC
■■Homology search results ■■ -
sp_hit_id P27544
Definition sp|P27544|LASS1_HUMAN LAG1 longevity assurance homolog 1 OS=Homo sapiens
Align length 57
Score (bit) 30.4
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919163|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_H11.
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27544|LASS1_HUMAN LAG1 longevity assurance homolog 1 OS=Homo...    30   4.0  
sp|P09033|XYLA_STRVO Xylose isomerase OS=Streptomyces violaceoni...    30   6.8  
sp|Q9L558|XYLA_STRTM Xylose isomerase OS=Streptomyces thermocyan...    30   6.8  
sp|P24300|XYLA_STRRU Xylose isomerase OS=Streptomyces rubiginosu...    30   6.8  
sp|P22857|XYLA_STRRO Xylose isomerase OS=Streptomyces rochei GN=...    30   6.8  
sp|P15587|XYLA_STROL Xylose isomerase OS=Streptomyces olivochrom...    30   6.8  
sp|Q93RJ9|XYLA_STROI Xylose isomerase OS=Streptomyces olivaceovi...    30   6.8  
sp|P37031|XYLA_STRMR Xylose isomerase OS=Streptomyces murinus GN...    30   6.8  
sp|Q9RFM4|XYLA_STRLI Xylose isomerase OS=Streptomyces lividans G...    30   6.8  
sp|Q9L0B8|XYLA_STRCO Xylose isomerase OS=Streptomyces coelicolor...    30   6.8  
sp|Q9S3Z4|XYLA_STRCK Xylose isomerase OS=Streptomyces corchorusi...    30   6.8  
sp|Q93HF3|XYLA_STRAW Xylose isomerase OS=Streptomyces avermitili...    30   6.8  
sp|P24299|XYLA_STRAL Xylose isomerase OS=Streptomyces albus G GN...    30   6.8  
sp|Q8TDY8|NOPE_HUMAN Neighbor of punc e11 OS=Homo sapiens GN=NOP...    30   6.8  

>sp|P27544|LASS1_HUMAN LAG1 longevity assurance homolog 1 OS=Homo
           sapiens GN=LASS1 PE=2 SV=1
          Length = 350

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = -2

Query: 271 YRSVGLEDLFCHYYVLIVKAEGMQCSGYYVGAGDDHH-------DLMCSSFSFSYLW 122
           Y +VG+  LF H  +  V+ E  + + Y+   G  +H       DL C SF FS+ W
Sbjct: 198 YHNVGILVLFLHD-ISDVQLEFTKLNIYFKSRGGSYHRLHALAADLGCLSFGFSWFW 253


>sp|P09033|XYLA_STRVO Xylose isomerase OS=Streptomyces violaceoniger
           GN=xylA PE=1 SV=2
          Length = 389

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 186 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 239

Query: 293 ---HLDL 282
              H+DL
Sbjct: 240 KLFHIDL 246


>sp|Q9L558|XYLA_STRTM Xylose isomerase OS=Streptomyces
           thermocyaneoviolaceus GN=xylA PE=3 SV=1
          Length = 388

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 186 EPRGDILLPTIGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 239

Query: 293 ---HLDL 282
              H+DL
Sbjct: 240 KLFHIDL 246


>sp|P24300|XYLA_STRRU Xylose isomerase OS=Streptomyces rubiginosus
           GN=xylA PE=1 SV=4
          Length = 388

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 186 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 239

Query: 293 ---HLDL 282
              H+DL
Sbjct: 240 KLFHIDL 246


>sp|P22857|XYLA_STRRO Xylose isomerase OS=Streptomyces rochei
           GN=xylA PE=3 SV=2
          Length = 394

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 185 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 238

Query: 293 ---HLDL 282
              H+DL
Sbjct: 239 KLFHIDL 245


>sp|P15587|XYLA_STROL Xylose isomerase OS=Streptomyces
           olivochromogenes GN=xylA PE=1 SV=3
          Length = 387

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 186 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 239

Query: 293 ---HLDL 282
              H+DL
Sbjct: 240 KLFHIDL 246


>sp|Q93RJ9|XYLA_STROI Xylose isomerase OS=Streptomyces
           olivaceoviridis GN=xylA PE=3 SV=1
          Length = 388

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 186 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 239

Query: 293 ---HLDL 282
              H+DL
Sbjct: 240 KLFHIDL 246


>sp|P37031|XYLA_STRMR Xylose isomerase OS=Streptomyces murinus
           GN=xylA PE=1 SV=1
          Length = 388

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 186 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 239

Query: 293 ---HLDL 282
              H+DL
Sbjct: 240 KLFHIDL 246


>sp|Q9RFM4|XYLA_STRLI Xylose isomerase OS=Streptomyces lividans
           GN=xylA PE=3 SV=1
          Length = 395

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 194 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 247

Query: 293 ---HLDL 282
              H+DL
Sbjct: 248 KLFHIDL 254


>sp|Q9L0B8|XYLA_STRCO Xylose isomerase OS=Streptomyces coelicolor
           GN=xylA PE=3 SV=1
          Length = 387

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 467 EPKANVLLATSGHLLPFGTVVKAGRPRACRLQVNERVLKSHKESCMLSSPNATFSLLW-- 294
           EP+ ++LL T GH L F  + +  RP      VN  V   H++   L+ P+     LW  
Sbjct: 186 EPRGDILLPTVGHALAF--IERLERPEL--YGVNPEV--GHEQMAGLNFPHGIAQALWAG 239

Query: 293 ---HLDL 282
              H+DL
Sbjct: 240 KLFHIDL 246
tr_hit_id Q1GNJ1
Definition tr|Q1GNJ1|Q1GNJ1_SPHAL Acyl-CoA dehydrogenase-like protein OS=Sphingopyxis alaskensis
Align length 45
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919163|Adiantum capillus-veneris mRNA, clone:
YMU001_000121_H11.
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1GNJ1|Q1GNJ1_SPHAL Acyl-CoA dehydrogenase-like protein OS=Sp...    33   7.2  
tr|B5JNW2|B5JNW2_9BACT Phenylalanyl-tRNA synthetase, beta subuni...    33   7.2  
tr|A4ERC6|A4ERC6_9RHOB Acyl-CoA dehydrogenase family protein OS=...    33   7.2  
tr|A2E4M9|A2E4M9_TRIVA Beige/BEACH domain containing protein OS=...    33   7.2  
tr|B1P1C6|B1P1C6_CHIJI Cystine knot toxin OS=Chilobrachys jingzh...    33   9.4  
tr|B1P1C4|B1P1C4_CHIJI Cystine knot toxin OS=Chilobrachys jingzh...    33   9.4  

>tr|Q1GNJ1|Q1GNJ1_SPHAL Acyl-CoA dehydrogenase-like protein
           OS=Sphingopyxis alaskensis GN=Sala_3077 PE=4 SV=1
          Length = 393

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 298 FGIWICCPVYRSVGLEDLFCHYYVLIVKAEGMQCSGY-YVGAGDD 167
           FGIW+  P     G E+   HY   I + E   C GY   GAG D
Sbjct: 97  FGIWMLGPALLKFGTEEQKVHYLNQIARGEIRWCQGYSEPGAGSD 141


>tr|B5JNW2|B5JNW2_9BACT Phenylalanyl-tRNA synthetase, beta subunit
           OS=Verrucomicrobiae bacterium DG1235 GN=VDG1235_761 PE=4
           SV=1
          Length = 812

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 220 VKAEGMQCSGYYVGAGDDHHDLM 152
           V ++GM CSG  +GAGDDH  L+
Sbjct: 115 VPSDGMMCSGKEIGAGDDHAGLL 137


>tr|A4ERC6|A4ERC6_9RHOB Acyl-CoA dehydrogenase family protein
           OS=Roseobacter sp. SK209-2-6 GN=RSK20926_18877 PE=4 SV=1
          Length = 391

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 298 FGIWICCPVYRSVGLEDLFCHYYVLIVKAEGMQCSGY-YVGAGDD 167
           FGIW+  P     G E+   HY   I + E   C GY   GAG D
Sbjct: 105 FGIWMLGPALLKFGTEEQKLHYLPPIARGEIRWCQGYSEPGAGSD 149


>tr|A2E4M9|A2E4M9_TRIVA Beige/BEACH domain containing protein
            OS=Trichomonas vaginalis G3 GN=TVAG_245710 PE=4 SV=1
          Length = 2250

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/79 (30%), Positives = 40/79 (50%)
 Frame = -2

Query: 256  LEDLFCHYYVLIVKAEGMQCSGYYVGAGDDHHDLMCSSFSFSYLWKEDIPESLPRLYEVD 77
            L  +F  Y V +  +EG      YV A  +   ++C+SF+ S+LW  DI     +L  + 
Sbjct: 2065 LAGVFSDYAVTVTLSEGYSI---YVCAMKNG-SIICNSFTNSFLWSTDINNVAKKLL-IT 2119

Query: 76   TLEGFILIALCRGTIILTI 20
             L GFIL    +  ++L++
Sbjct: 2120 RLWGFILCQCQKELVLLSV 2138


>tr|B1P1C6|B1P1C6_CHIJI Cystine knot toxin OS=Chilobrachys jingzhao
           GN=JZTX-12.2 PE=4 SV=1
          Length = 66

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 259 GLEDLFCHYYVLIVKAEGMQCSGYYVGAGDDHHDLMCSSFSFSYLWK 119
           GL  LFC+ +   +KA G  C G   G  D      CS F+ S  WK
Sbjct: 11  GLPLLFCNSFAAELKATGRGCGGLMDGC-DGKSTFCCSGFNCSPTWK 56


>tr|B1P1C4|B1P1C4_CHIJI Cystine knot toxin OS=Chilobrachys jingzhao
           GN=JZTX-12 PE=4 SV=1
          Length = 66

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 259 GLEDLFCHYYVLIVKAEGMQCSGYYVGAGDDHHDLMCSSFSFSYLWK 119
           GL  LFC+ +   +KA G  C G   G  D      CS F+ S  WK
Sbjct: 11  GLALLFCNSFAAELKATGRGCGGLMDGC-DGKSTFCCSGFNCSPTWK 56