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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919165
Clone id YMU001_000122_A02
Library
Length 367
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGANTTTCAAAGTACAAAAAGCTTTACAAGTTAACAAACGGAAGTTCATAATCCCCTGG
CCAAGCTAGATTTCCATTCACCTGGACTGCTTGGAACGTAGGTACAAGTAATGAAAAGCA
CACCCAACTAAAACACCCCAGACAGACGGACACAGGTAAGAGACCACATGATGAGGTCTA
TACCCACACCAAAACTAACACATACCCAACACTACTTATTCCTATTGGTGCCAAAAAACC
TACATGAGTTTCTTGGCTTGCAACTTCTGCACCTCAGTCTGAAGAGTCCTCACATACTGA
ATGGCTTCATCCAGAATGAATGCAGTATCCGTAGACTCCCCCCCTGGAATAACTCCACGA
AGAAGCC
■■Homology search results ■■ -
sp_hit_id Q9ASX9
Definition sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144 OS=Arabidopsis thaliana
Align length 35
Score (bit) 46.6
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919165|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_A02.
         (367 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144 OS=Arabidopsi...    47   4e-05
sp|Q9FHA7|HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis th...    42   0.001
sp|Q9SND4|HEC2_ARATH Transcription factor HEC2 OS=Arabidopsis th...    41   0.002
sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thal...    40   0.005
sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3 OS=Arabidopsis th...    38   0.014
sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis ...    38   0.018
sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis...    37   0.031
sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis...    37   0.031
sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thal...    37   0.031
sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza sa...    37   0.040
sp|Q9FGB0|BH145_ARATH Transcription factor bHLH145 OS=Arabidopsi...    36   0.052
sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsi...    36   0.052
sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis...    36   0.052
sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis...    36   0.069
sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1 OS=Arabidopsis th...    35   0.12 
sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsi...    35   0.12 
sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis...    35   0.12 
sp|Q8W2F3|PIF4_ARATH Transcription factor PIF4 OS=Arabidopsis th...    34   0.26 
sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis th...    34   0.26 
sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis...    34   0.26 
sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis th...    33   0.34 
sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis th...    33   0.34 
sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis th...    33   0.44 
sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis...    33   0.44 
sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis ...    33   0.58 
sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsi...    33   0.58 
sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis...    33   0.58 
sp|Q9FMF4|SAC51_ARATH Transcription factor SAC51 OS=Arabidopsis ...    32   0.76 
sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis...    32   0.76 
sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis...    32   0.76 

>sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144 OS=Arabidopsis
           thaliana GN=BHLH144 PE=1 SV=1
          Length = 251

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 29/35 (82%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           +LR ++PGGE  +TA +LDEA+QY+++L+ E QKL
Sbjct: 208 VLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKL 242


>sp|Q9FHA7|HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis
           thaliana GN=HEC1 PE=1 SV=1
          Length = 241

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 18/41 (43%), Positives = 30/41 (73%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQAKKLM 243
           +L+ ++PGG   DTA +LDEAI YV+ L+ +VQ L+ + ++
Sbjct: 150 ILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEQAVV 190


>sp|Q9SND4|HEC2_ARATH Transcription factor HEC2 OS=Arabidopsis
           thaliana GN=HEC2 PE=1 SV=1
          Length = 231

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQ 258
           +L+ ++PGG   DTA +LDEAI YV+ L+ +VQ L+
Sbjct: 147 ILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182


>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis
           thaliana GN=IND PE=1 SV=3
          Length = 198

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 17/36 (47%), Positives = 27/36 (75%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQ 258
           +L+ ++PGG   DTA +LDEAI+Y + L+ +V+ LQ
Sbjct: 140 ILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175


>sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3 OS=Arabidopsis
           thaliana GN=HEC3 PE=2 SV=1
          Length = 224

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           +L+ ++PGG   DTA +LDEAI+YV+ L+ +++ L
Sbjct: 147 ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181


>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis
           thaliana GN=SPT PE=1 SV=1
          Length = 373

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           L+ +IP    TD A +LDEAI+Y++ LQ +VQ L
Sbjct: 220 LQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 253


>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis
           thaliana GN=BHLH69 PE=2 SV=2
          Length = 310

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQAKKL 246
           L+ ++P G  TD A +LDE I YV+ LQ +V+ L   +L
Sbjct: 159 LQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 197


>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis
           thaliana GN=BHLH66 PE=2 SV=1
          Length = 350

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQAKKL 246
           L+ ++P G  TD A +LDE I YV+ LQ +V+ L   +L
Sbjct: 167 LQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 205


>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis
           thaliana GN=ALC PE=2 SV=1
          Length = 210

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           L+ +IP    TD A +LDEAI+Y++ LQ +VQ L
Sbjct: 116 LQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTL 149


>sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza
           sativa subsp. japonica GN=LAX PE=1 SV=1
          Length = 215

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQA 255
           +LR ++PGG   DT  +L++AI YV+ L+ +V   QA
Sbjct: 62  VLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTLHQA 98
tr_hit_id A2XJ23
Definition tr|A2XJ23|A2XJ23_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 37
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919165|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_A02.
         (367 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2XJ23|A2XJ23_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|Q75H21|Q75H21_ORYSJ Putative uncharacterized protein OSJNBa00...    46   0.001
tr|Q10HE8|Q10HE8_ORYSJ Os03g0591300 protein OS=Oryza sativa subs...    46   0.001
tr|A2XJ24|A2XJ24_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|Q6Z861|Q6Z861_ORYSJ Os02g0315600 protein OS=Oryza sativa subs...    45   0.001
tr|B4FJ82|B4FJ82_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.001
tr|A2X405|A2X405_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|Q00M80|Q00M80_SOYBN BHelix-loop-helix transcription factor OS...    45   0.002
tr|Q5ZE55|Q5ZE55_ORYSJ cDNA clone:J023099H13, full insert sequen...    44   0.003
tr|A2WST9|A2WST9_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|B4G182|B4G182_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.004
tr|A7QQM0|A7QQM0_VITVI Chromosome undetermined scaffold_143, who...    44   0.004
tr|A5AUF1|A5AUF1_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|Q6Z9R3|Q6Z9R3_ORYSJ BHLH protein family-like (Putative unchar...    44   0.005
tr|Q00M67|Q00M67_SOYBN Bhelix-loop-helix transcription factor OS...    44   0.005
tr|A9RE75|A9RE75_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A7NTX5|A7NTX5_VITVI Chromosome chr18 scaffold_1, whole genome...    44   0.005
tr|A2YW50|A2YW50_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|B6UAA1|B6UAA1_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.007
tr|B4FL37|B4FL37_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.007
tr|A9S962|A9S962_PHYPA Predicted protein (Fragment) OS=Physcomit...    43   0.009
tr|A3BNX2|A3BNX2_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|A2YQH4|A2YQH4_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|Q67TR8|Q67TR8_ORYSJ Os09g0455300 protein OS=Oryza sativa subs...    42   0.015
tr|A2Z200|A2Z200_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.015
tr|A7PLA9|A7PLA9_VITVI Chromosome chr7 scaffold_20, whole genome...    42   0.020
tr|B6STU1|B6STU1_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1       41   0.026
tr|Q8S0N2|Q8S0N2_ORYSJ cDNA clone:001-207-E08, full insert seque...    41   0.034
tr|A9T4H7|A9T4H7_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|A2WUA1|A2WUA1_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.034

>tr|A2XJ23|A2XJ23_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12438 PE=4 SV=1
          Length = 263

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 19/37 (51%), Positives = 31/37 (83%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQAK 252
           L+G+IPGG+  DT  +LDEA++Y+++L+ EV+KL A+
Sbjct: 223 LKGIIPGGDRMDTPAVLDEAVRYLKSLKVEVKKLGAR 259


>tr|Q75H21|Q75H21_ORYSJ Putative uncharacterized protein
           OSJNBa0027H16.21 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0027H16.21 PE=4 SV=1
          Length = 384

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/34 (52%), Positives = 29/34 (85%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           L+G+IPGG+  DT  +LDEA++Y+++L+ EV+KL
Sbjct: 223 LKGIIPGGDRMDTPAVLDEAVRYLKSLKVEVKKL 256


>tr|Q10HE8|Q10HE8_ORYSJ Os03g0591300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0591300 PE=2 SV=1
          Length = 263

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/34 (52%), Positives = 29/34 (85%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           L+G+IPGG+  DT  +LDEA++Y+++L+ EV+KL
Sbjct: 223 LKGIIPGGDRMDTPAVLDEAVRYLKSLKVEVKKL 256


>tr|A2XJ24|A2XJ24_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12439 PE=4 SV=1
          Length = 263

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/34 (52%), Positives = 29/34 (85%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           L+G+IPGG+  DT  +LDEA++Y+++L+ EV+KL
Sbjct: 223 LKGIIPGGDRMDTPAVLDEAVRYLKSLKVEVKKL 256


>tr|Q6Z861|Q6Z861_ORYSJ Os02g0315600 protein OS=Oryza sativa subsp.
           japonica GN=P0572D06.2 PE=2 SV=1
          Length = 254

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 18/34 (52%), Positives = 28/34 (82%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           L+G+IPGG   DT  +LDEA++Y+++L+ EV+KL
Sbjct: 214 LKGIIPGGNQMDTPAVLDEAVRYLKSLKVEVKKL 247


>tr|B4FJ82|B4FJ82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 264

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 18/37 (48%), Positives = 30/37 (81%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQAK 252
           L+G+IPGG+  DT  +LDEA++Y+++L+ EV+K  A+
Sbjct: 224 LKGIIPGGDRMDTPAVLDEAVRYLKSLKVEVKKAGAR 260


>tr|A2X405|A2X405_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06938 PE=4 SV=1
          Length = 254

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 18/34 (52%), Positives = 28/34 (82%)
 Frame = -3

Query: 362 LRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           L+G+IPGG   DT  +LDEA++Y+++L+ EV+KL
Sbjct: 214 LKGIIPGGNQMDTPAVLDEAVRYLKSLKVEVKKL 247


>tr|Q00M80|Q00M80_SOYBN BHelix-loop-helix transcription factor
           OS=Glycine max PE=4 SV=1
          Length = 264

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKLQ 258
           +L+ ++PGG   DTA +LDEAI YV+ L+T+VQ LQ
Sbjct: 172 ILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLQ 207


>tr|Q5ZE55|Q5ZE55_ORYSJ cDNA clone:J023099H13, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0688A04.7 PE=2 SV=1
          Length = 245

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 17/35 (48%), Positives = 29/35 (82%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           +LRG+IPGG+  DTA +++EA++Y++ L+ E +KL
Sbjct: 204 VLRGIIPGGDQLDTASVIEEAVRYLKFLKMEAKKL 238


>tr|A2WST9|A2WST9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02932 PE=4 SV=1
          Length = 245

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 17/35 (48%), Positives = 29/35 (82%)
 Frame = -3

Query: 365 LLRGVIPGGESTDTAFILDEAIQYVRTLQTEVQKL 261
           +LRG+IPGG+  DTA +++EA++Y++ L+ E +KL
Sbjct: 204 VLRGIIPGGDQLDTASVIEEAVRYLKFLKMEAKKL 238