BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919167|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_A04.
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6D8E5|GLND_ERWCT [Protein-PII] uridylyltransferase OS=Erwini...    30   4.0  
sp|Q1QTL1|RLMN_CHRSD Ribosomal RNA large subunit methyltransfera...    30   4.1  

>sp|Q6D8E5|GLND_ERWCT [Protein-PII] uridylyltransferase OS=Erwinia
           carotovora subsp. atroseptica GN=glnD PE=3 SV=1
          Length = 904

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
 Frame = +3

Query: 6   HPPMPRVSWLPLGIYLYQFQKGTTHK*GYLHSSLGITDFI------GLTKN---LLDYSM 158
           +P +P+   L L    +   KG     G  HS LG  D +      GL      L+ + +
Sbjct: 509 YPRLPQPELLLLAALFHDIAKGR----GGDHSELGALDVLEFAALHGLNSREAQLVSWLV 564

Query: 159 FCYLL-SATCPRLSYLNLLHHAHMTVNVSVQLLKIHSITLLLYNLRTLHSTLTFAWRQSL 335
            C+LL S T  R    +          V  +    + ++L + ++   + TL  +W+QSL
Sbjct: 565 RCHLLMSVTAQRRDIQDPTVIQQFATEVQSETRLRYLVSLTVADICATNETLWNSWKQSL 624

Query: 336 LR 341
           LR
Sbjct: 625 LR 626


>sp|Q1QTL1|RLMN_CHRSD Ribosomal RNA large subunit methyltransferase
           N OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
           BAA-138 / NCIMB 13768) GN=rlmN PE=3 SV=1
          Length = 375

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 453 TLRASSMLVKSTQCLCCQQGAIGLRMHMV--QLLNIVWVAATKIGAKR 316
           TL  SS +  S  C  C  G  G + ++   +++  VWVA+   GA+R
Sbjct: 111 TLCVSSQVGCSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFGARR 158

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919167|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_A04.
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******