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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919173
Clone id YMU001_000122_A12
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTATCATGAGGCCTGCTCCTGCTTTTGTTGGGAGCTTCTCTACATCTTTATCCAACGCAT
TCGTAGAATCATCGATAACTGGCAATGCAGAACCTCCAGTCTTTGCGTGTAACATCCTTG
GAGCTCTGTCGATCAGTCTTATTAGAACAGCCACTACTGATTTGTTCTGCATCCGTAAAA
TTATTGCACTCCCCTCTGACATATTTAACACTAGTATCACATTTTCGAAGTTTATTTATC
AAGACTGAGTAATCCCCATCATAGTTGTCATCATCACTTTCGTCATAATTATACCCTCGC
TTTCGTTGATGCTCATGTCTACATTCTAGATTAACTTCTTTCAGGCACAACTACTTTCGG
ATGTCTCAAGTTTGCTTAGAATGATTTTTAAGATGGTCATCCCATCCAGGAGAGGAGCAA
TCATCTGAATCCTTGCTAGGTGAGCTTTCCACACCTTGGACCCTGGTAAGAACTGGGGAT
GTATTTCTGACTTTACAGAAAAACCCGGAAACCTTTTTACTGTTTAAAGAATCTAAATTA
TCAACACAAAAACCTCCGTCACTGCATCCGGAG
■■Homology search results ■■ -
sp_hit_id Q57048
Definition sp|Q57048|Y020_HAEIN Uncharacterized transporter HI0020 OS=Haemophilus influenzae
Align length 35
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919173|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_A12.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q57048|Y020_HAEIN Uncharacterized transporter HI0020 OS=Haemo...    32   1.7  
sp|Q26626|KIFA3_STRPU Kinesin-associated protein 3 OS=Strongyloc...    32   2.2  
sp|Q8ZTY1|PRIS_PYRAE Probable DNA primase small subunit OS=Pyrob...    32   2.9  
sp|P70188|KIFA3_MOUSE Kinesin-associated protein 3 OS=Mus muscul...    31   3.8  
sp|Q92845|KIFA3_HUMAN Kinesin-associated protein 3 OS=Homo sapie...    31   3.8  
sp|A0JC51|ZIC4_XENLA Zinc finger protein ZIC 4 OS=Xenopus laevis...    31   5.0  

>sp|Q57048|Y020_HAEIN Uncharacterized transporter HI0020
           OS=Haemophilus influenzae GN=HI0020 PE=3 SV=1
          Length = 479

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 106 AKTGGSALPVIDDSTNALDKDVEKLPTKAGAGLMI 2
           A++GG   P+I+    AL  D EK P KAG  LM+
Sbjct: 149 ARSGGIIFPIINSVVVALGSDPEKSPKKAGRYLMM 183


>sp|Q26626|KIFA3_STRPU Kinesin-associated protein 3
           OS=Strongylocentrotus purpuratus GN=KAP115 PE=1 SV=1
          Length = 828

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 12/30 (40%), Positives = 24/30 (80%)
 Frame = -3

Query: 214 LVLNMSEGSAIILRMQNKSVVAVLIRLIDR 125
           L+LN+SE   + L+M+NK+++ +LI+ ++R
Sbjct: 284 LLLNLSEDPKVELKMKNKNIIRLLIKTLER 313


>sp|Q8ZTY1|PRIS_PYRAE Probable DNA primase small subunit
           OS=Pyrobaculum aerophilum GN=priA PE=3 SV=1
          Length = 312

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -3

Query: 211 VLNMSEG--SAIILRMQNKSVVAVLIRLIDRAPRMLHAKTGGSALPVIDDSTNALDKDVE 38
           +L + +G   A  ++++   VV   I  + RAP  L+ KTG  ALP+   S   LDK VE
Sbjct: 197 LLRIKQGVEDARAMKVEIDEVVTQDIHRLIRAPGSLNGKTGLVALPI---SLKELDKGVE 253

Query: 37  KLPTKA 20
            +  KA
Sbjct: 254 YIVDKA 259


>sp|P70188|KIFA3_MOUSE Kinesin-associated protein 3 OS=Mus musculus
           GN=Kifap3 PE=1 SV=1
          Length = 793

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 12/30 (40%), Positives = 24/30 (80%)
 Frame = -3

Query: 214 LVLNMSEGSAIILRMQNKSVVAVLIRLIDR 125
           L+LN++E +   L+M+NK++V +L++ +DR
Sbjct: 285 LLLNLAEDTRTELKMRNKNIVHMLVKALDR 314


>sp|Q92845|KIFA3_HUMAN Kinesin-associated protein 3 OS=Homo sapiens
           GN=KIFAP3 PE=1 SV=2
          Length = 792

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 12/30 (40%), Positives = 24/30 (80%)
 Frame = -3

Query: 214 LVLNMSEGSAIILRMQNKSVVAVLIRLIDR 125
           L+LN++E +   L+M+NK++V +L++ +DR
Sbjct: 285 LLLNLAEDTRTELKMRNKNIVHMLVKALDR 314


>sp|A0JC51|ZIC4_XENLA Zinc finger protein ZIC 4 OS=Xenopus laevis
           GN=zic4 PE=2 SV=1
          Length = 530

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 209 H*YHIFEVYLSRLSNPHHSCHHHFRHNYTLA 301
           H  H   + LS   NPHH  HHH  H++ +A
Sbjct: 83  HIGHPGALKLSPAHNPHHRHHHHHHHHHHMA 113
tr_hit_id B6X7Z3
Definition tr|B6X7Z3|B6X7Z3_9ENTR Putative uncharacterized protein OS=Providencia rustigianii DSM 4541
Align length 52
Score (bit) 34.3
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919173|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_A12.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6X7Z3|B6X7Z3_9ENTR Putative uncharacterized protein OS=Provi...    34   5.0  
tr|B2PYV9|B2PYV9_PROST Putative uncharacterized protein OS=Provi...    34   5.0  
tr|B6NVF1|B6NVF1_BRAFL Putative uncharacterized protein OS=Branc...    34   5.0  
tr|B6NVE0|B6NVE0_BRAFL Putative uncharacterized protein OS=Branc...    34   6.6  
tr|B6XB41|B6XB41_9ENTR Putative uncharacterized protein OS=Provi...    33   8.6  

>tr|B6X7Z3|B6X7Z3_9ENTR Putative uncharacterized protein
           OS=Providencia rustigianii DSM 4541 GN=PROVRUST_03366
           PE=4 SV=1
          Length = 477

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 157 VVAVLIRLIDRAPRMLHAKTGGSALPVIDDSTNALDKDVEKLPTKAGAGLMI 2
           V A+L  +I  A     A+ GG   P+I+    AL  D EK P KAG  L++
Sbjct: 130 VTAILDLIIAPATPSNTARAGGIVFPIINSVAVALGSDPEKSPRKAGHYLLV 181


>tr|B2PYV9|B2PYV9_PROST Putative uncharacterized protein
           OS=Providencia stuartii ATCC 25827 GN=PROSTU_02090 PE=4
           SV=1
          Length = 477

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 157 VVAVLIRLIDRAPRMLHAKTGGSALPVIDDSTNALDKDVEKLPTKAGAGLMI 2
           V A+L  +I  A     A+ GG   P+I+    AL  D EK P KAG  L++
Sbjct: 130 VTAILDLIIAPATPSNTARAGGIVFPIINSVAVALGSDPEKSPRKAGHYLLV 181


>tr|B6NVF1|B6NVF1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_129054 PE=4 SV=1
          Length = 856

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 14/30 (46%), Positives = 24/30 (80%)
 Frame = -3

Query: 214 LVLNMSEGSAIILRMQNKSVVAVLIRLIDR 125
           ++LN++E   + ++M+NKSV+ VLIR +DR
Sbjct: 444 MLLNLAEDYKVEMKMRNKSVIQVLIRTLDR 473


>tr|B6NVE0|B6NVE0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_129051 PE=4 SV=1
          Length = 1168

 Score = 33.9 bits (76), Expect = 6.6
 Identities = 13/30 (43%), Positives = 24/30 (80%)
 Frame = -3

Query: 214 LVLNMSEGSAIILRMQNKSVVAVLIRLIDR 125
           ++LN++E   + ++M+NKS++ VLIR +DR
Sbjct: 479 MLLNLAEDYKVEMKMRNKSIIQVLIRTLDR 508


>tr|B6XB41|B6XB41_9ENTR Putative uncharacterized protein
           OS=Providencia alcalifaciens DSM 30120
           GN=PROVALCAL_00588 PE=4 SV=1
          Length = 477

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 157 VVAVLIRLIDRAPRMLHAKTGGSALPVIDDSTNALDKDVEKLPTKAGAGLMI 2
           V A+L  +I  A     A+ GG   P+I+    AL  D EK P KAG  L++
Sbjct: 130 VTALLDLIIAPATPSNTARAGGIVFPIINSVAVALGSDPEKSPRKAGHYLLV 181