BP919174 |
Clone id |
YMU001_000122_B01 |
Library |
YMU01 |
Length |
320 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000122_B01. |
Accession |
BP919174 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AATGGTTCCCTCGACAAACAGAAGGCGAGACTTATTGCTCGGGGTTTCACACAGCAACCA TGCGTGGACTTTGATGAGACCTTTGCTCCCATCGCTCCCATGACTACCATGCGCACAGTG TATGCTCTCGCAGCCAACTTTGGTTGGCCTATCAATCAGATGGATGTTAAAAGTGCTTAA CTGAACGGAGATTTGGATAAAGAAGTATATGTGGAGCAATCTCCTGCGTGTCGTATACCA AGCAACGAGGATTGGGTCTATCAGTTGTGAAAAGCATTGTATGGATTGAAGCTGGCTGGA TGACAGTGGTTACTCACACT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
83 |
Score (bit) |
77.8 |
E-value |
2.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9AUM6 |
Definition |
tr|Q9AUM6|Q9AUM6_ORYSA Putative gag-pol polyprotein OS=Oryza sativa |
Align length |
85 |
Score (bit) |
98.6 |
E-value |
1.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919174|Adiantum capillus-veneris mRNA, clone: YMU001_000122_B01. (320 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9AUM6|Q9AUM6_ORYSA Putative gag-pol polyprotein OS=Oryza sat... 99 1e-19 tr|Q10F54|Q10F54_ORYSJ Retrotransposon protein, putative, Ty1-co... 99 1e-19 tr|B8LKV8|B8LKV8_PICSI Putative uncharacterized protein OS=Picea... 98 2e-19 tr|Q25AF6|Q25AF6_ORYSA H0512B01.8 protein OS=Oryza sativa GN=H05... 98 2e-19 tr|Q0J867|Q0J867_ORYSJ Os08g0133100 protein (Fragment) OS=Oryza ... 98 2e-19 tr|Q0DEJ1|Q0DEJ1_ORYSJ Os06g0149600 protein OS=Oryza sativa subs... 96 1e-18 tr|Q9AY40|Q9AY40_ORYSA Putative gag-pol polyprotein OS=Oryza sat... 95 2e-18 tr|Q7XQG8|Q7XQG8_ORYSJ OJ000114_01.9 protein OS=Oryza sativa sub... 95 2e-18 tr|Q7XM06|Q7XM06_ORYSJ OSJNBa0086O06.3 protein OS=Oryza sativa s... 95 2e-18 tr|Q7X8G8|Q7X8G8_ORYSA OSJNBb0016D16.22 protein OS=Oryza sativa ... 95 2e-18 tr|Q2QW16|Q2QW16_ORYSJ Retrotransposon protein, putative, unclas... 95 2e-18 tr|Q0JNP3|Q0JNP3_ORYSJ Os01g0275200 protein OS=Oryza sativa subs... 95 2e-18 tr|Q0J6Y6|Q0J6Y6_ORYSJ Os08g0248500 protein OS=Oryza sativa subs... 95 2e-18 tr|Q0E147|Q0E147_ORYSJ Os02g0491900 protein OS=Oryza sativa subs... 95 2e-18 tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical O... 95 2e-18 tr|Q8GZY7|Q8GZY7_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 94 3e-18 tr|Q7XME6|Q7XME6_ORYSJ OSJNBa0061G20.13 protein OS=Oryza sativa ... 94 3e-18 tr|Q6AUP9|Q6AUP9_ORYSJ Putative polyprotein OS=Oryza sativa subs... 94 3e-18 tr|Q0DSV7|Q0DSV7_ORYSJ Os03g0285000 protein OS=Oryza sativa subs... 94 3e-18 tr|Q01KM9|Q01KM9_ORYSA OSIGBa0097A15.7 protein OS=Oryza sativa G... 94 3e-18 tr|Q6I5S8|Q6I5S8_ORYSJ Putative polyprotein OS=Oryza sativa subs... 94 3e-18 tr|Q25AG1|Q25AG1_ORYSA H0512B01.3 protein OS=Oryza sativa GN=H05... 94 3e-18 tr|Q688M7|Q688M7_ORYSJ cDNA clone:001-115-E07, full insert seque... 94 4e-18 tr|Q0J600|Q0J600_ORYSJ Os08g0384400 protein OS=Oryza sativa subs... 94 4e-18 tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=A... 93 6e-18 tr|Q2QMT8|Q2QMT8_ORYSJ Retrotransposon protein, putative, Ty1-co... 93 6e-18 tr|Q7XTU6|Q7XTU6_ORYSA OSJNBb0034I13.10 protein OS=Oryza sativa ... 93 8e-18 tr|Q2QXP9|Q2QXP9_ORYSJ Retrotransposon protein, putative, unclas... 93 8e-18 tr|Q2QPC0|Q2QPC0_ORYSJ Retrotransposon protein, putative, Ty1-co... 93 8e-18 tr|Q0J0Z8|Q0J0Z8_ORYSJ Os09g0473900 protein OS=Oryza sativa subs... 93 8e-18
>tr|Q9AUM6|Q9AUM6_ORYSA Putative gag-pol polyprotein OS=Oryza sativa GN=OSJNBa0067E01.5 PE=4 SV=1 Length = 1831
Score = 98.6 bits (244), Expect = 1e-19 Identities = 50/85 (58%), Positives = 61/85 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G++ K KARL+ARGF QQ VDFD+ FAP+A M ++R + ALAA GW ++ MDVKSA L Sbjct: 1284 GAVIKHKARLVARGFVQQEGVDFDDAFAPVARMESVRLLLALAAQEGWRVHHMDVKSAFL 1343
Query: 184 NGDLDKEVYVEQSPACRIPSNEDWV 258 NGDL KEVY Q P IPS E+ V Sbjct: 1344 NGDLKKEVYAHQPPGFVIPSKENKV 1368
>tr|Q10F54|Q10F54_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g47702 PE=4 SV=1 Length = 2311
Score = 98.6 bits (244), Expect = 1e-19 Identities = 50/85 (58%), Positives = 61/85 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G++ K KARL+ARGF QQ VDFD+ FAP+A M ++R + ALAA GW ++ MDVKSA L Sbjct: 1764 GAVIKHKARLVARGFVQQEGVDFDDAFAPVARMESVRLLLALAAQEGWRVHHMDVKSAFL 1823
Query: 184 NGDLDKEVYVEQSPACRIPSNEDWV 258 NGDL KEVY Q P IPS E+ V Sbjct: 1824 NGDLKKEVYAHQPPGFVIPSKENKV 1848
>tr|B8LKV8|B8LKV8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 363
Score = 98.2 bits (243), Expect = 2e-19 Identities = 48/86 (55%), Positives = 62/86 (72%) Frame = +1
Query: 1 NGSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA* 180 NG LDK KARL+A+GF Q+ VD++ETFAP+A + T+R V A+AA W + QMDVKSA Sbjct: 39 NGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAF 98
Query: 181 LNGDLDKEVYVEQSPACRIPSNEDWV 258 LNG L++EVYV+Q P + ED V Sbjct: 99 LNGYLEEEVYVQQPPRYEVRGQEDKV 124
>tr|Q25AF6|Q25AF6_ORYSA H0512B01.8 protein OS=Oryza sativa GN=H0512B01.8 PE=4 SV=1 Length = 1454
Score = 97.8 bits (242), Expect = 2e-19 Identities = 48/85 (56%), Positives = 61/85 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G + K KARL+ARGF QQP +DFDE FAP+A M ++R + A+AA GW ++ MDVKSA L Sbjct: 994 GKVVKHKARLVARGFVQQPGIDFDEVFAPVARMESIRLLLAVAAQKGWHVHHMDVKSAFL 1053
Query: 184 NGDLDKEVYVEQSPACRIPSNEDWV 258 NGDL +EVYV+Q P + ED V Sbjct: 1054 NGDLAEEVYVKQPPGFVVAGEEDKV 1078
>tr|Q0J867|Q0J867_ORYSJ Os08g0133100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os08g0133100 PE=4 SV=1 Length = 508
Score = 97.8 bits (242), Expect = 2e-19 Identities = 48/85 (56%), Positives = 61/85 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G + K KARL+ARGF QQP +DFDE FAP+A M ++R + A+AA GW ++ MDVKSA L Sbjct: 53 GKVVKHKARLVARGFVQQPGIDFDEVFAPVARMESIRLLLAVAAQKGWHVHHMDVKSAFL 112
Query: 184 NGDLDKEVYVEQSPACRIPSNEDWV 258 NGDL +EVYV+Q P + ED V Sbjct: 113 NGDLAEEVYVKQPPGFVVAGEEDKV 137
>tr|Q0DEJ1|Q0DEJ1_ORYSJ Os06g0149600 protein OS=Oryza sativa subsp. japonica GN=Os06g0149600 PE=4 SV=1 Length = 1600
Score = 95.5 bits (236), Expect = 1e-18 Identities = 46/82 (56%), Positives = 59/82 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G++ K KARL+ARGF QQ +D+D+ FAP+A M ++R + ALAA GW ++ MDVKSA L Sbjct: 1140 GAIVKHKARLVARGFVQQEGIDYDDAFAPVAQMESVRLLLALAAQEGWGVHHMDVKSAFL 1199
Query: 184 NGDLDKEVYVEQSPACRIPSNE 249 NGDL +EVYV Q P IP E Sbjct: 1200 NGDLKEEVYVHQPPGFVIPGKE 1221
>tr|Q9AY40|Q9AY40_ORYSA Putative gag-pol polyprotein OS=Oryza sativa GN=OSJNBa0027P10.24 PE=4 SV=1 Length = 1611
Score = 95.1 bits (235), Expect = 2e-18 Identities = 46/82 (56%), Positives = 59/82 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G++ K KARL+ARGF QQ +D+D+ FAP+A M ++R + ALAA GW ++ MDVKSA L Sbjct: 1151 GAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLLALAAQEGWGVHHMDVKSAFL 1210
Query: 184 NGDLDKEVYVEQSPACRIPSNE 249 NGDL +EVYV Q P IP E Sbjct: 1211 NGDLKEEVYVHQPPGFVIPGKE 1232
>tr|Q7XQG8|Q7XQG8_ORYSJ OJ000114_01.9 protein OS=Oryza sativa subsp. japonica GN=OJ000114_01.9 PE=4 SV=1 Length = 1601
Score = 95.1 bits (235), Expect = 2e-18 Identities = 46/82 (56%), Positives = 59/82 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G++ K KARL+ARGF QQ +D+D+ FAP+A M ++R + ALAA GW ++ MDVKSA L Sbjct: 1141 GAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLLALAAQEGWGVHHMDVKSAFL 1200
Query: 184 NGDLDKEVYVEQSPACRIPSNE 249 NGDL +EVYV Q P IP E Sbjct: 1201 NGDLKEEVYVHQPPGFVIPGKE 1222
>tr|Q7XM06|Q7XM06_ORYSJ OSJNBa0086O06.3 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0086O06.3 PE=4 SV=2 Length = 1498
Score = 95.1 bits (235), Expect = 2e-18 Identities = 46/82 (56%), Positives = 59/82 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G++ K KARL+ARGF QQ +D+D+ FAP+A M ++R + ALAA GW ++ MDVKSA L Sbjct: 1038 GAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLLALAAQEGWGVHHMDVKSAFL 1097
Query: 184 NGDLDKEVYVEQSPACRIPSNE 249 NGDL +EVYV Q P IP E Sbjct: 1098 NGDLKEEVYVHQPPGFVIPGKE 1119
>tr|Q7X8G8|Q7X8G8_ORYSA OSJNBb0016D16.22 protein OS=Oryza sativa GN=OSJNBb0016D16.22 PE=4 SV=1 Length = 1498
Score = 95.1 bits (235), Expect = 2e-18 Identities = 46/82 (56%), Positives = 59/82 (71%) Frame = +1
Query: 4 GSLDKQKARLIARGFTQQPCVDFDETFAPIAPMTTMRTVYALAANFGWPINQMDVKSA*L 183 G++ K KARL+ARGF QQ +D+D+ FAP+A M ++R + ALAA GW ++ MDVKSA L Sbjct: 1038 GAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLLALAAQEGWGVHHMDVKSAFL 1097
Query: 184 NGDLDKEVYVEQSPACRIPSNE 249 NGDL +EVYV Q P IP E Sbjct: 1098 NGDLKEEVYVHQPPGFVIPGKE 1119
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