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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919175
Clone id YMU001_000122_B02
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAGAGCACAATGATCCACAACCACTACAGTAACAAGTAAAATCTGGCTACAAACACCAC
AAAAAGGGAGACCCTTCTTCCCTTTCGCCAAGGGCGGCACACCCACTTGCTTGCAGATGA
GCAGCAGTTGTTGCATCAAAACTGCGGCTTTTGACCAATTCCACATGCTTTGTTTACCAA
AATGTCTAATATTTCACTACATATTCAAAACAAATATATCTTCCACTACTGTATATGAGA
GTAAACCTCGTACCAATTGAAGATCCCAGCGAACAATGGATCAATGCCAAACCATCGCTA
ACGCTTCTTCAAATACCCAATATAGCAGACTGCAAAGAGCTCCAACCCGTTGATACAACA
AGAACACCGAAGCTAAAACTACACTAATTCAATGCTACTGTATGTCAGTAGGCCTACGGC
CCTCTATACTGAGGATCCGCTGTAGGGCCCCGATATTGAGGAGGGAGAGGCGTACTTGGT
CTTCCTTGTGCGCCTGCAAAATTGTACC
■■Homology search results ■■ -
sp_hit_id Q8CFE5
Definition sp|Q8CFE5|BTBD7_MOUSE BTB/POZ domain-containing protein 7 OS=Mus musculus
Align length 38
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919175|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B02.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CFE5|BTBD7_MOUSE BTB/POZ domain-containing protein 7 OS=Mus...    32   1.3  
sp|Q63870|CO7A1_MOUSE Collagen alpha-1(VII) chain OS=Mus musculu...    32   2.2  
sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated ...    31   2.9  
sp|P55053|FABP5_RAT Fatty acid-binding protein, epidermal OS=Rat...    30   4.9  
sp|P13941|CO3A1_RAT Collagen alpha-1(III) chain OS=Rattus norveg...    30   6.5  
sp|P08121|CO3A1_MOUSE Collagen alpha-1(III) chain OS=Mus musculu...    30   6.5  
sp|O26742|PUR1_METTH Amidophosphoribosyltransferase OS=Methanoba...    30   6.6  
sp|P02461|CO3A1_HUMAN Collagen alpha-1(III) chain OS=Homo sapien...    30   8.4  

>sp|Q8CFE5|BTBD7_MOUSE BTB/POZ domain-containing protein 7 OS=Mus
            musculus GN=Btbd7 PE=2 SV=1
          Length = 1130

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 506  YNFAGAQGRPSTPLPPQYRGPTADPQYRGP*AY*HTVA 393
            Y+F+ A  RPSTP P ++    A  +Y GP  Y H  A
Sbjct: 942  YDFSNAACRPSTPAPGRHSPSPAHGRYFGPDLYSHNKA 979


>sp|Q63870|CO7A1_MOUSE Collagen alpha-1(VII) chain OS=Mus musculus
            GN=Col7a1 PE=2 SV=3
          Length = 2944

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 500  FAGAQGRPSTPLPPQYRGPTADPQYRGP 417
            F G +G P    PP  RGP  DP  RGP
Sbjct: 1361 FPGKKGDPGPSGPPGSRGPVGDPGPRGP 1388


>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated
           protein B OS=Schizosaccharomyces pombe GN=smb1 PE=2 SV=1
          Length = 147

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 147 AFDQFHMLCLPKCLIFHYIFKTNISSTTVYESK 245
           AFD F  L L  C  + +I K N+ S +VYE K
Sbjct: 30  AFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEK 62


>sp|P55053|FABP5_RAT Fatty acid-binding protein, epidermal OS=Rattus
           norvegicus GN=Fabp5 PE=1 SV=3
          Length = 135

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 383 CSFSFGVLVVSTGWSSLQSAILGI*RSVSDGLALIHCSLGSSIGTR 246
           C+F+ G LV    W   +S I    R + DG  ++ C + ++I TR
Sbjct: 87  CTFTDGALVQHQKWEGKESTIT---RKLKDGKMVVECVMNNAICTR 129


>sp|P13941|CO3A1_RAT Collagen alpha-1(III) chain OS=Rattus
           norvegicus GN=Col3a1 PE=2 SV=3
          Length = 1463

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 494 GAQGRPSTPLPPQYRGPTADPQYRGP 417
           G+ G P +P  P Y+GP  +P   GP
Sbjct: 185 GSSGHPGSPGSPGYQGPPGEPGQAGP 210


>sp|P08121|CO3A1_MOUSE Collagen alpha-1(III) chain OS=Mus musculus
           GN=Col3a1 PE=2 SV=4
          Length = 1464

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 494 GAQGRPSTPLPPQYRGPTADPQYRGP 417
           G+ G P +P  P Y+GP  +P   GP
Sbjct: 185 GSSGHPGSPGSPGYQGPPGEPGQAGP 210


>sp|O26742|PUR1_METTH Amidophosphoribosyltransferase
           OS=Methanobacterium thermoautotrophicum GN=purF PE=3
           SV=1
          Length = 474

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -1

Query: 205 NM**NIRHFGKQSMWNWSKAAVLMQQLLLICKQVGVPPLAKGKKGLPFCGVCSQILLVTV 26
           NM  +I+   +Q + ++S   +L Q L ++   VG+ PLA  +KG     V S+ +   V
Sbjct: 156 NMIYSIKRVSEQLVGSYSLVVLLNQDLYVVRDPVGIKPLAFARKGSTQI-VASETVAFDV 214

Query: 25  VVVDH 11
           +  +H
Sbjct: 215 IGAEH 219


>sp|P02461|CO3A1_HUMAN Collagen alpha-1(III) chain OS=Homo sapiens
           GN=COL3A1 PE=1 SV=4
          Length = 1466

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 494 GAQGRPSTPLPPQYRGPTADPQYRGP 417
           G  G P +P  P Y+GP  +P   GP
Sbjct: 186 GTSGHPGSPGSPGYQGPPGEPGQAGP 211
tr_hit_id A5KZ45
Definition tr|A5KZ45|A5KZ45_9GAMM Putative uncharacterized protein OS=Vibrionales bacterium SWAT-3
Align length 56
Score (bit) 33.5
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919175|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B02.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5KZ45|A5KZ45_9GAMM Putative uncharacterized protein OS=Vibri...    33   6.1  
tr|Q2Q1J8|Q2Q1J8_9NEOP NADH-ubiquinone oxidoreductase chain 6 OS...    33   6.1  
tr|B0U802|B0U802_METS4 CTP synthase OS=Methylobacterium sp. (str...    33   7.8  
tr|B8IP92|B8IP92_METNO CTP synthase OS=Methylobacterium nodulans...    33   7.8  

>tr|A5KZ45|A5KZ45_9GAMM Putative uncharacterized protein
           OS=Vibrionales bacterium SWAT-3 GN=VSWAT3_19681 PE=4
           SV=1
          Length = 586

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -1

Query: 382 VVLASVFLLYQRVGALCSLLY--WVFEEALAMVWH*SIVRWDLQLVRGLLSYTVVE 221
           V+ A+++LL++     C++LY  ++F  ALA+ W   ++R    L   L +Y +++
Sbjct: 359 VIPATLYLLFKNKNDHCTILYLIFIFNLALALFWQIRVMRLCFVLAAPLQAYVIIQ 414


>tr|Q2Q1J8|Q2Q1J8_9NEOP NADH-ubiquinone oxidoreductase chain 6
           OS=Tamolanica tamolana GN=ND6 PE=3 SV=1
          Length = 167

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 LTNSTCFVYQNV*YFTTYSKQIYLPLLYMRVNLVPIEDPSEQWINAKPSLTLLQIPN 321
           L ++  F Y N   F    K I+LPL++M +  +    PS  + N + SLTL  IPN
Sbjct: 71  LASNEMFFYSNKILF----KIIFLPLIFMLIYFIYPYYPSNMYENMENSLTLSLIPN 123


>tr|B0U802|B0U802_METS4 CTP synthase OS=Methylobacterium sp. (strain
           4-46) GN=M446_5402 PE=3 SV=1
          Length = 542

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 SVGLRPSILRIRCRAPILRRERRTWSSLC 491
           S+G++P IL  RC  PI R ERR  +  C
Sbjct: 199 SIGIQPDILLCRCDRPIPREERRKLAQFC 227


>tr|B8IP92|B8IP92_METNO CTP synthase OS=Methylobacterium nodulans
           ORS 2060 GN=Mnod_5568 PE=3 SV=1
          Length = 542

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 SVGLRPSILRIRCRAPILRRERRTWSSLC 491
           S+G++P IL  RC  PI R ERR  +  C
Sbjct: 199 SIGIQPDILLCRCDRPIPREERRKLAQFC 227