| BP919178 |
| Clone id |
YMU001_000122_B05 |
| Library |
YMU01 |
| Length |
367 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000122_B05. |
| Accession |
BP919178 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL1136Contig1 |
| Sequence |
GGAGGCCCTGCTGACGAGGTCGGAGGTGCTCTCCTGCTCTTTCGCCCTGGAGGGTAAGCC
CTGCTTACGATTCGGTAGTCTCAAATGCGGCCGTTCAAGCATTGTATGCTCACGCATCCA
CAAGAGGAGATGCCCGGGGTTGCCCATCACAAGGAGAAAGTTGGCGCATTTCAATAGATC
TCCCAACGAGCTCTCACGATGGGTTACGCTTCCCAGAGGGCTCTGCAGAGCTCAAACTAT
GGACTTTCCACCAGGCATGCCCTTCTCTTCTCCCGTGGAAGTTCTACATGCGTGCAGAAT
TTTGCGCCTGGAGCTTTTGTTCAAACCCGTCGTTCACATAGTCAGATGCTTGGATTTCAG
AGAATCC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q8TF72 |
| Definition |
sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens |
| Align length |
58 |
| Score (bit) |
34.3 |
| E-value |
0.2 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919178|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B05.
(367 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3... 34 0.20
sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulat... 31 2.2
sp|P63090|PTN_RAT Pleiotrophin OS=Rattus norvegicus GN=Ptn PE=1 ... 30 2.9
sp|P63089|PTN_MOUSE Pleiotrophin OS=Mus musculus GN=Ptn PE=2 SV=1 30 2.9
sp|P21246|PTN_HUMAN Pleiotrophin OS=Homo sapiens GN=PTN PE=1 SV=1 30 2.9
sp|P21782|PTN_BOVIN Pleiotrophin OS=Bos taurus GN=PTN PE=1 SV=2 30 2.9
sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 ... 30 2.9
sp|P07897|PGCA_RAT Aggrecan core protein OS=Rattus norvegicus GN... 30 3.8
sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 ... 30 3.8
sp|Q9N119|3BHS_PIG 3 beta-hydroxysteroid dehydrogenase/Delta 5--... 30 3.8
sp|O31185|Y4105_RHIME UPF0700 transmembrane protein RA0705 OS=Rh... 29 6.4
sp|Q63540|ATX1_RAT Ataxin-1 OS=Rattus norvegicus GN=Atxn1 PE=2 SV=1 29 6.4
sp|Q32KY8|ASB17_BOVIN Ankyrin repeat and SOCS box protein 17 OS=... 29 6.4
sp|P09275|VHS_VZVD Virion host shutoff protein OS=Varicella-zost... 29 6.4
sp|Q9QXN0|SHRM3_MOUSE Protein Shroom3 OS=Mus musculus GN=Shroom3... 29 6.4
sp|Q3AE32|THIM_CARHZ Hydroxyethylthiazole kinase OS=Carboxydothe... 29 8.3
sp|P54253|ATX1_HUMAN Ataxin-1 OS=Homo sapiens GN=ATXN1 PE=1 SV=2 29 8.3
sp|P79281|PTN_PIG Pleiotrophin OS=Sus scrofa GN=PTN PE=2 SV=1 29 8.4
>sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3 PE=1
SV=1
Length = 1995
Score = 34.3 bits (77), Expect = 0.20
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 57 SPAYDSVVSNAAVQALYAHASTRGDAR-GCPSQGESWRISIDLPTSSHDGLRFPEGSA 227
S AY + + +A + L A + R D G P SWR P+S+H GLR PE SA
Sbjct: 920 SRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASRSWR---PRPSSAHVGLRSPEASA 974
>sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulated by
oncogenes OS=Homo sapiens GN=CDON PE=1 SV=1
Length = 1287
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +2
Query: 173 NRSPNELSRWVTL-----PRGLCRAQTMDFPPGMPFSSPVEVLHACR 298
+ + N + W L P G C +TM PPG+P SP EVL R
Sbjct: 1240 SETENNIVSWNALILPPVPEG-CAEKTMWSPPGIPLDSPTEVLQQPR 1285
>sp|P63090|PTN_RAT Pleiotrophin OS=Rattus norvegicus GN=Ptn PE=1
SV=1
Length = 168
Score = 30.4 bits (67), Expect = 2.9
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Frame = +3
Query: 87 AAVQALYAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGS---AELKLWTFHQA 257
AAV A + + + S W+ S+ +PTS GL EG+ AE K Q
Sbjct: 25 AAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQR 84
Query: 258 CPSLLPWKFYMRAE----FCAWSFC 320
C WK AE F AW C
Sbjct: 85 CKIPCNWKKQFGAECKYQFQAWGEC 109
>sp|P63089|PTN_MOUSE Pleiotrophin OS=Mus musculus GN=Ptn PE=2 SV=1
Length = 168
Score = 30.4 bits (67), Expect = 2.9
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Frame = +3
Query: 87 AAVQALYAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGS---AELKLWTFHQA 257
AAV A + + + S W+ S+ +PTS GL EG+ AE K Q
Sbjct: 25 AAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQR 84
Query: 258 CPSLLPWKFYMRAE----FCAWSFC 320
C WK AE F AW C
Sbjct: 85 CKIPCNWKKQFGAECKYQFQAWGEC 109
>sp|P21246|PTN_HUMAN Pleiotrophin OS=Homo sapiens GN=PTN PE=1 SV=1
Length = 168
Score = 30.4 bits (67), Expect = 2.9
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Frame = +3
Query: 87 AAVQALYAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGS---AELKLWTFHQA 257
AAV A + + + S W+ S+ +PTS GL EG+ AE K Q
Sbjct: 25 AAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQR 84
Query: 258 CPSLLPWKFYMRAE----FCAWSFC 320
C WK AE F AW C
Sbjct: 85 CKIPCNWKKQFGAECKYQFQAWGEC 109
>sp|P21782|PTN_BOVIN Pleiotrophin OS=Bos taurus GN=PTN PE=1 SV=2
Length = 168
Score = 30.4 bits (67), Expect = 2.9
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Frame = +3
Query: 87 AAVQALYAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGS---AELKLWTFHQA 257
AAV A + + + S W+ S+ +PTS GL EG+ AE K Q
Sbjct: 25 AAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQR 84
Query: 258 CPSLLPWKFYMRAE----FCAWSFC 320
C WK AE F AW C
Sbjct: 85 CKIPCNWKKQFGAECKYQFQAWGEC 109
>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40
OS=Xenopus laevis GN=lrrc40 PE=2 SV=1
Length = 605
Score = 30.4 bits (67), Expect = 2.9
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 15 RGRRCSPALSPWRVSPAYDSVVSNAAVQALYAHASTRGDARGCPSQGES-WRISIDLPTS 191
RG + LS +R +S V ++A ARG S WRI++D P
Sbjct: 6 RGGKAPDPLSGFRAPKEQESAVPFGLIKAARKSGQLNLSARGLTEVPVSVWRINVDTPPE 65
Query: 192 SHDGLRF 212
+H + F
Sbjct: 66 AHQNVDF 72
>sp|P07897|PGCA_RAT Aggrecan core protein OS=Rattus norvegicus GN=Acan
PE=1 SV=2
Length = 2124
Score = 30.0 bits (66), Expect = 3.8
Identities = 26/77 (33%), Positives = 31/77 (40%)
Frame = +3
Query: 45 PWRVSPAYDSVVSNAAVQALYAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGS 224
PW +P D + S A AS GD G PS GE S T GL P G
Sbjct: 875 PWSSTPTVDRLPSGGESLEGSASASGTGDLSGLPSGGEITETSAS-GTEEISGL--PSGG 931
Query: 225 AELKLWTFHQACPSLLP 275
+L+ T S+LP
Sbjct: 932 DDLETSTSGIDGASVLP 948
>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40
OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1
Length = 605
Score = 30.0 bits (66), Expect = 3.8
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 15 RGRRCSPALSPWRVSPAYDSVVSNAAVQALYAHASTRGDARGCPSQGES-WRISIDLPTS 191
RG + LS +R + V + ++A ARG S WRI++D P
Sbjct: 6 RGGKAPDPLSGFRAPKEQEPAVPHGLIKAARKSGQLNLSARGLTDVPVSVWRINVDTPPE 65
Query: 192 SHDGLRF 212
+H + F
Sbjct: 66 AHQNVDF 72
>sp|Q9N119|3BHS_PIG 3 beta-hydroxysteroid dehydrogenase/Delta
5-->4-isomerase OS=Sus scrofa GN=HSD3B PE=2 SV=4
Length = 373
Score = 30.0 bits (66), Expect = 3.8
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Frame = +3
Query: 51 RVSPAYDSVVSNAAVQALYAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGSAE 230
RV+P Y V N A + A + R + QG+ + ++ D P S+D L + G
Sbjct: 220 RVNPVY---VGNVAWAHILALRALRDPRKALSVQGQFYYVADDTPPQSYDDLNYTLG--- 273
Query: 231 LKLWTF-----HQACPSLLPWKFYM 290
K W F PSL W ++
Sbjct: 274 -KEWGFCLDSRRSLPPSLRYWLAFL 297
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B2END1 |
| Definition |
tr|B2END1|B2END1_9BACT Putative uncharacterized protein OS=bacterium Ellin514 |
| Align length |
36 |
| Score (bit) |
34.7 |
| E-value |
2.4 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919178|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B05.
(367 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B2END1|B2END1_9BACT Putative uncharacterized protein OS=bacte... 35 2.4
tr|Q6ZVL3|Q6ZVL3_HUMAN cDNA FLJ42424 fis, clone BLADE2004089, mo... 35 2.4
tr|B4E244|B4E244_HUMAN cDNA FLJ55531, highly similar to Homo sap... 34 3.2
tr|B3KY47|B3KY47_HUMAN cDNA FLJ46841 fis, clone UTERU3000670, hi... 34 3.2
tr|A2QGK6|A2QGK6_ASPNC Catalytic activity: enzyme of S. pombe ca... 34 3.2
tr|B8BBH5|B8BBH5_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.2
tr|Q0A9Q2|Q0A9Q2_ALHEH Oligopeptide/dipeptide ABC transporter, A... 33 5.5
tr|Q0CRY0|Q0CRY0_ASPTN Putative uncharacterized protein OS=Asper... 33 5.5
tr|B8MGG1|B8MGG1_9EURO C6 transcription factor, putative OS=Tala... 33 5.5
tr|Q3M8G5|Q3M8G5_ANAVT Alpha/beta hydrolase fold OS=Anabaena var... 33 9.3
>tr|B2END1|B2END1_9BACT Putative uncharacterized protein
OS=bacterium Ellin514 GN=CflavDRAFT_4213 PE=4 SV=1
Length = 291
Score = 34.7 bits (78), Expect = 2.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 177 DLPTSSHD---GLRFPEGSAELKLWTFHQACPSLLP 275
DLP S H GL F +G AE+K W ++ PSL+P
Sbjct: 229 DLPASYHHRAGGLSFADGHAEIKRWRDNRTMPSLVP 264
>tr|Q6ZVL3|Q6ZVL3_HUMAN cDNA FLJ42424 fis, clone BLADE2004089,
moderately similar to Mus musculus PDZ domain actin
binding protein Shroom mRNA (Fragment) OS=Homo sapiens
PE=2 SV=1
Length = 809
Score = 34.7 bits (78), Expect = 2.4
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 57 SPAYDSVVSNAAVQALYAHASTRGDAR-GCPSQGESWRISIDLPTSSHDGLRFPEGSAEL 233
S AY + + +A + L A + R D G P SWR P+S+H GLR PE SA
Sbjct: 432 SRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASRSWR---PRPSSAHVGLRSPEASASA 488
Query: 234 KLWT---FHQACPS 266
T +H P+
Sbjct: 489 SPHTPREWHSVTPA 502
>tr|B4E244|B4E244_HUMAN cDNA FLJ55531, highly similar to Homo
sapiens shroom (SHRM), mRNA OS=Homo sapiens PE=2 SV=1
Length = 1124
Score = 34.3 bits (77), Expect = 3.2
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 57 SPAYDSVVSNAAVQALYAHASTRGDAR-GCPSQGESWRISIDLPTSSHDGLRFPEGSA 227
S AY + + +A + L A + R D G P SWR P+S+H GLR PE SA
Sbjct: 745 SRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASRSWR---PRPSSAHVGLRSPEASA 799
>tr|B3KY47|B3KY47_HUMAN cDNA FLJ46841 fis, clone UTERU3000670,
highly similar to Homo sapiens shroom (SHRM), mRNA
OS=Homo sapiens PE=2 SV=1
Length = 1774
Score = 34.3 bits (77), Expect = 3.2
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 57 SPAYDSVVSNAAVQALYAHASTRGDAR-GCPSQGESWRISIDLPTSSHDGLRFPEGSA 227
S AY + + +A + L A + R D G P SWR P+S+H GLR PE SA
Sbjct: 699 SRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASRSWR---PRPSSAHVGLRSPEASA 753
>tr|A2QGK6|A2QGK6_ASPNC Catalytic activity: enzyme of S. pombe
catalyzes the reduction of quinone OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=An03g03640 PE=3 SV=1
Length = 527
Score = 34.3 bits (77), Expect = 3.2
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +3
Query: 66 YDSVVSNAAVQALYAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGSAELKLWT 245
Y V + YA+ + GDA P+ + I+ + P H+ LR EG A ++
Sbjct: 395 YVDVDAGTTRHTKYANVWSAGDASSLPTSKTAAAITSEAPVLVHNLLRSMEGKATDAVYD 454
Query: 246 FHQACPSLLPWKFYMRAEF 302
+ +CP + + + AEF
Sbjct: 455 GYASCPLVTEYGKVLLAEF 473
>tr|B8BBH5|B8BBH5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28132 PE=4 SV=1
Length = 353
Score = 33.9 bits (76), Expect = 4.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -2
Query: 273 GEEKGMPGGKSIV*ALQSPLGSVTHRESSLGDLLKCANFLLVMGNPGHLLL 121
GEE+G P + V + + LGS RE + D + C FLL +G LL+
Sbjct: 67 GEEEGRPPARLSVARVAAGLGSGRRREPFVADRIGCDGFLLYLGKRIKLLM 117
>tr|Q0A9Q2|Q0A9Q2_ALHEH Oligopeptide/dipeptide ABC transporter,
ATPase subunit OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=Mlg_1083 PE=3 SV=1
Length = 669
Score = 33.5 bits (75), Expect = 5.5
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = +3
Query: 51 RVSPAY-DSVVSNAAVQALYA---HASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPE 218
RV+ Y VV V+A++A H T P G +WR + LP + PE
Sbjct: 558 RVAVMYLGEVVEEGPVEAVFAGPGHPYTAALLAATPDPGRAWRPPVRLPGHNPGPAGRPE 617
Query: 219 GSAELKLWTFHQACPSLLP 275
G FH CP +LP
Sbjct: 618 GC------PFHTRCPYVLP 630
>tr|Q0CRY0|Q0CRY0_ASPTN Putative uncharacterized protein
OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_03554
PE=4 SV=1
Length = 501
Score = 33.5 bits (75), Expect = 5.5
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 105 YAHASTRGDARGCPSQGESWRISIDLPTSSHDGLRFPEGSAELKLWTFHQACPSLLPWKF 284
Y + + GDA P+ + ++ + P H+ LR EG A ++ + +CP L +
Sbjct: 334 YPNVWSAGDASSLPTSKTAAAVTAEAPVLVHNLLRSMEGKAAEAVYDGYTSCPLLTEYGK 393
Query: 285 YMRAEF 302
+ AEF
Sbjct: 394 VLLAEF 399
>tr|B8MGG1|B8MGG1_9EURO C6 transcription factor, putative
OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_013810 PE=4
SV=1
Length = 878
Score = 33.5 bits (75), Expect = 5.5
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 138 GCPSQGESWRISIDLPTSSHDGLRFPEGSAEL 233
G P Q +SW+ DLP + HDG F E S EL
Sbjct: 404 GIPKQAQSWQSDTDLPRNIHDG-DFDENSIEL 434
>tr|Q3M8G5|Q3M8G5_ANAVT Alpha/beta hydrolase fold OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_3113
PE=4 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 9.3
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Frame = +2
Query: 41 FALEGKPCLRFGSLKCGRSSIVCSRIHKRRC--PGLPITRR-----KLAHFNRSPNELSR 199
F KPCLR K G I RI + C P + + LA R+ + R
Sbjct: 73 FGFSDKPCLR--QEKNGHQVIELERIIQCLCDEPAIVVAESLGALVALALAQRNAELIGR 130
Query: 200 WVTLPRGLCRAQTMDFPPGMPFSSPVEVLHACRILRLELLFKPVVHIVRCLDFRE 364
V + + + + +P+E+L LRL LF P+V V ++ R+
Sbjct: 131 LVVINAPIFTESLPHWAMSILAQTPIEILQTIDDLRLAYLFAPIVREVMAIERRK 185
|