BP919179
Clone id YMU001_000122_B06
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCGCTCGAGCGGCCTGATTTCTCTGTTCTGTCACGCGACCTCAAAATTTCCCCTGCTCGT
TTCATGATCTGTACACTTTTCTCAACTGCAGCATGCTCAAGAGCTGCCTTCCCTGCTAAA
ATGATTTGATGCCCCTTGCTGGGATTCTGAGCAGGTGCTTTTCTCCTAGGCCTCAAGACA
TTCTCAAGTATAACCCCTCCTAACTTTGATATCTCACTTGTGGTACTCTTACCGTAATTT
TCTCTTGAATTTTGGTCACAAATAGGTAACACTTTTCCAAATCTATTTTTTGGCCTTGTT
ACCATCTCAGATACACCCCCTTTGAACATTCTGTGCCCTGCCGAGGTGATTTTATTGCCA
CCATCCTCCAAACCCTGAGCAAATACCTTCTTTCGTCTATATCTGCCTGAACTCACTTCC
TCTCCTAAAGCTGCCTTCCCTGCTAATATAATTTGGTCATACTCTTCTCGTGTCTTACGA
ACAGGAGCTTCTAAAGCCAACAAAAACACTTT
■■Homology search results ■■ -
sp_hit_id Q5NVF7
Definition sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii
Align length 158
Score (bit) 31.2
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919179|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B06.
(512 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii ... 31 2.9
sp|Q96PV4|PNMA5_HUMAN Paraneoplastic antigen-like protein 5 OS=H... 31 3.8
sp|Q89PK9|Y3471_BRAJA Uncharacterized transporter bll3471 OS=Bra... 30 5.0
sp|P84092|AP2M1_RAT AP-2 complex subunit mu-1 OS=Rattus norvegic... 30 6.5
sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu-1 OS=Mus musculus ... 30 6.5
sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu-1 OS=Macaca fascic... 30 6.5
sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu-1 OS=Homo sapiens ... 30 6.5
sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu-1 OS=Bos taurus GN... 30 6.5
sp|Q894B4|MRAW_CLOTE S-adenosyl-L-methionine-dependent methyltra... 30 8.5

>sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii
GN=AP2M1 PE=2 SV=1
Length = 435

Score = 31.2 bits (69), Expect = 2.9
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 5/158 (3%)
Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
+T+EE QI +G +YRR ++F LE N + S ++ VS V
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
G +P C D+ E GK T E SK G +++ A +
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
HQ + L + E+S+ + GE R RT K
Sbjct: 249 HQCV-----RLSKSDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q96PV4|PNMA5_HUMAN Paraneoplastic antigen-like protein 5 OS=Homo
sapiens GN=PNMA5 PE=2 SV=2
Length = 448

Score = 30.8 bits (68), Expect = 3.8
Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Frame = -1

Query: 503 LLALEAPVRKTREEYDQIILAGKAALGEEVSSGR-YRR----KKVFAQGLEDGGNKITSA 339
LL + P+ + E + AG L GR +RR K VF + L D N T
Sbjct: 21 LLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRREDNAKAVFIE-LADTVNYTTLP 79

Query: 338 GHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENY-----GKSTTSEISKLG-----GVI 189
H KGG E+V +P+N + L SR NY G+S T LG
Sbjct: 80 SHIPGKGGSWEVVVKPRNPDDEFL------SRLNYFLKDEGRSMTDVARALGCCSLPAES 133

Query: 188 LENVLRPRRKAPAQNPSK 135
L+ + P+ ++P P K
Sbjct: 134 LDAEVMPQVRSPPLEPPK 151


>sp|Q89PK9|Y3471_BRAJA Uncharacterized transporter bll3471
OS=Bradyrhizobium japonicum GN=bll3471 PE=3 SV=1
Length = 562

Score = 30.4 bits (67), Expect = 5.0
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = -1

Query: 278 GKVLPICDQNSRENYGKSTTSEISKLGG----VILENVLRPRRKAPAQNPSK---GHQII 120
G VL + N R +G+S ++GG V L + R R+AP ++ G +
Sbjct: 300 GNVLDVLVDN-RNLHGRSIRDVADRIGGDARGVFLRALTRHGREAPLSADTRVYVGDVMT 358

Query: 119 LAGKAA-LEHAAVEKSVQIMKRAGEILRSRDRTE 21
L G +E AA K+ G+I+RS DRT+
Sbjct: 359 LVGSTRNIERAA--------KQVGQIVRSGDRTD 384


>sp|P84092|AP2M1_RAT AP-2 complex subunit mu-1 OS=Rattus norvegicus
GN=Ap2m1 PE=1 SV=1
Length = 435

Score = 30.0 bits (66), Expect = 6.5
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
+T+EE QI +G +YRR ++F LE N + S ++ VS V
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
G +P C D+ E GK T E SK G +++ A +
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
HQ + L E+S+ + GE R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu-1 OS=Mus musculus
GN=Ap2m1 PE=1 SV=1
Length = 435

Score = 30.0 bits (66), Expect = 6.5
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
+T+EE QI +G +YRR ++F LE N + S ++ VS V
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
G +P C D+ E GK T E SK G +++ A +
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
HQ + L E+S+ + GE R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu-1 OS=Macaca
fascicularis GN=AP2M1 PE=2 SV=1
Length = 435

Score = 30.0 bits (66), Expect = 6.5
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
+T+EE QI +G +YRR ++F LE N + S ++ VS V
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
G +P C D+ E GK T E SK G +++ A +
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
HQ + L E+S+ + GE R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu-1 OS=Homo sapiens
GN=AP2M1 PE=1 SV=2
Length = 435

Score = 30.0 bits (66), Expect = 6.5
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
+T+EE QI +G +YRR ++F LE N + S ++ VS V
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
G +P C D+ E GK T E SK G +++ A +
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
HQ + L E+S+ + GE R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu-1 OS=Bos taurus
GN=AP2M1 PE=2 SV=1
Length = 435

Score = 30.0 bits (66), Expect = 6.5
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
+T+EE QI +G +YRR ++F LE N + S ++ VS V
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
G +P C D+ E GK T E SK G +++ A +
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
HQ + L E+S+ + GE R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q894B4|MRAW_CLOTE S-adenosyl-L-methionine-dependent
methyltransferase mraW OS=Clostridium tetani GN=mraW
PE=3 SV=1
Length = 310

Score = 29.6 bits (65), Expect = 8.5
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = -1

Query: 290 KNRFGKVLPICDQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKGHQIILAG 111
+ RF K + SREN TT E+ + + R PA+ + +I + G
Sbjct: 156 EERFAKRISNFIVESRENKKIETTGELVDIIKRAIPAKFRREGPHPAKRTFQAIRIEVNG 215

Query: 110 KAALEHAAVEKSVQIMKRAGEI 45
+ + + A+E SV+ +K G I
Sbjct: 216 ELEILNKAIEDSVKSLKSGGRI 237


tr_hit_id B3S250
Definition tr|B3S250|B3S250_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens
Align length 91
Score (bit) 37.4
E-value 0.43
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919179|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B06.
(512 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3S250|B3S250_TRIAD Putative uncharacterized protein OS=Trich... 37 0.43
tr|O17873|O17873_CAEEL Protein F46C5.6, partially confirmed by t... 36 1.3
tr|A8WSK7|A8WSK7_CAEBR Putative uncharacterized protein OS=Caeno... 36 1.3
tr|Q0FHW8|Q0FHW8_9RHOB Probable phosphopyruvate hydratase OS=Ros... 35 2.8
tr|A8LJL9|A8LJL9_DINSH Peptidase S58 DmpA OS=Dinoroseobacter shi... 34 3.7
tr|B0UFR0|B0UFR0_METS4 ABC-type multidrug transport system ATPas... 33 6.2
tr|Q8CV02|Q8CV02_OCEIH Isochorismate synthase OS=Oceanobacillus ... 33 8.1

>tr|B3S250|B3S250_TRIAD Putative uncharacterized protein
OS=Trichoplax adhaerens GN=TRIADDRAFT_57926 PE=4 SV=1
Length = 834

Score = 37.4 bits (85), Expect = 0.43
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = -1

Query: 368 EDGGNKITSAGHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKLGGVI 189
E+ GNKI+ A H +F+ S+M + K K I S+ K+TTS+++
Sbjct: 127 ENDGNKISQANHNIFQ---SKMKSTTKENADKPRRITRSKSKAIASKATTSKVTTKTDQA 183

Query: 188 LENVLRPRRKAPAQNPSKGHQIILAGKAALE 96
++ V + AP + +I++ G E
Sbjct: 184 MKKVANKKPTAPTVKNLRNRKIVIPGSKPKE 214


>tr|O17873|O17873_CAEEL Protein F46C5.6, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=F46C5.6
PE=4 SV=5
Length = 945

Score = 35.8 bits (81), Expect = 1.3
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = -1

Query: 329 MFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKL 201
+ GG S+++ + + K+LPI +N +EN G++T ++ +L
Sbjct: 457 LLHGGSSDVIAKISHNLSKILPILYENVKENPGRTTVQQVDRL 499


>tr|A8WSK7|A8WSK7_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG03194 PE=4 SV=2
Length = 960

Score = 35.8 bits (81), Expect = 1.3
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Frame = -1

Query: 329 MFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPA 150
+ GG S+++ + + K+LPI +N ++N GK+T ++ +L + +LR
Sbjct: 464 LLHGGSSDVIAKISHNLSKILPILYENVKDNPGKTTIQQLDRL-LIGCNQILR------T 516

Query: 149 QNPSKGHQIILAGKAAL-----EHAAVEKSVQIMKRAGEILRSR 33
+ + H+ +L AL E V+ V ++K+ E+L R
Sbjct: 517 SSSWRSHEALLKSLKALSGCIEEETIVDTFVPLLKK--EVLNVR 558


>tr|Q0FHW8|Q0FHW8_9RHOB Probable phosphopyruvate hydratase
OS=Roseovarius sp. HTCC2601 GN=R2601_24569 PE=4 SV=1
Length = 281

Score = 34.7 bits (78), Expect = 2.8
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Frame = -1

Query: 446 LAGKAALGEEVS----SGRY-RRKKVFAQGLEDGGNKITSAGHRM---FKGGVSEMVTRP 291
LAG A LG E + +GR+ RR+++F QG+ED + HR+ F+ +
Sbjct: 52 LAGAAELGGEAALVAETGRHARRRELFLQGVED----FRAHAHRLADVFRADRHDHEFLD 107

Query: 290 KNRFGKVLPICD---QNSRENYGKSTTS-EISKLGGVILENVLRPRRKAPAQNPSKGHQI 123
+R +VL D RE+ G + I +LGG + + +A A+N
Sbjct: 108 VDRVVRVLAAIDDVHHRHREDAGGGAANVAIERLGGELGRGL--GGGEADAENGVGAETA 165

Query: 122 ILAGKAALEHAAVE----KSVQIMKRAGEILRSR 33
++ G L+H AV+ V+ +R G++ R
Sbjct: 166 LVVGAVELDHRAVDGFLLGGVEAHQRLGDLAVDR 199


>tr|A8LJL9|A8LJL9_DINSH Peptidase S58 DmpA OS=Dinoroseobacter shibae
(strain DFL 12) GN=Dshi_2889 PE=4 SV=1
Length = 327

Score = 34.3 bits (77), Expect = 3.7
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKI----TSAGHRMFKGGVS 309
KT E+ D ++L+G +ALG + +SG + +G + GG ++ + + GG
Sbjct: 65 KTVEQVDALVLSGGSALGLDAASGVADALRAAGRGFDVGGQRVPIVPAAILFDLLNGGDK 124

Query: 308 EMVTRPKNRFGK 273
+ + P N G+
Sbjct: 125 DWMVNPYNWLGR 136


>tr|B0UFR0|B0UFR0_METS4 ABC-type multidrug transport system ATPase
and permease components-like protein OS=Methylobacterium
sp. (strain 4-46) GN=M446_2335 PE=4 SV=1
Length = 901

Score = 33.5 bits (75), Expect = 6.2
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -1

Query: 254 QNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKGHQIILAGKAALEHAAVEKS 75
QN R EI +L + RR APA + +G I+LAG AA + A+ E+
Sbjct: 328 QNERRRAALPAFGEIGRLVAALEARAKATRRLAPAASFPRGGPIVLAGAAAYDPASGERL 387

Query: 74 V 72
+
Sbjct: 388 I 388


>tr|Q8CV02|Q8CV02_OCEIH Isochorismate synthase OS=Oceanobacillus
iheyensis GN=dhbC PE=4 SV=1
Length = 398

Score = 33.1 bits (74), Expect = 8.1
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = -1

Query: 314 VSEMVTRPKNRFGKVLPICDQNSRENY-GKSTTSEISKLGGVILENVL---RPRRKAPAQ 147
V ++T +++ L ++N + G S ISK G +++ N L RPR+K P +
Sbjct: 161 VQNLITHNHDKYNFALNTSEENKEKTLIGASPELLISKKGSIVVSNPLAGSRPRQKDPEK 220

Query: 146 NPSKGHQIILAGKAALEHAAVEKSV 72
+ ++ + K EH V +SV
Sbjct: 221 DVLMAQELRHSEKDLHEHKLVVQSV 245