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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919179
Clone id YMU001_000122_B06
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCGCTCGAGCGGCCTGATTTCTCTGTTCTGTCACGCGACCTCAAAATTTCCCCTGCTCGT
TTCATGATCTGTACACTTTTCTCAACTGCAGCATGCTCAAGAGCTGCCTTCCCTGCTAAA
ATGATTTGATGCCCCTTGCTGGGATTCTGAGCAGGTGCTTTTCTCCTAGGCCTCAAGACA
TTCTCAAGTATAACCCCTCCTAACTTTGATATCTCACTTGTGGTACTCTTACCGTAATTT
TCTCTTGAATTTTGGTCACAAATAGGTAACACTTTTCCAAATCTATTTTTTGGCCTTGTT
ACCATCTCAGATACACCCCCTTTGAACATTCTGTGCCCTGCCGAGGTGATTTTATTGCCA
CCATCCTCCAAACCCTGAGCAAATACCTTCTTTCGTCTATATCTGCCTGAACTCACTTCC
TCTCCTAAAGCTGCCTTCCCTGCTAATATAATTTGGTCATACTCTTCTCGTGTCTTACGA
ACAGGAGCTTCTAAAGCCAACAAAAACACTTT
■■Homology search results ■■ -
sp_hit_id Q5NVF7
Definition sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii
Align length 158
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919179|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B06.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii ...    31   2.9  
sp|Q96PV4|PNMA5_HUMAN Paraneoplastic antigen-like protein 5 OS=H...    31   3.8  
sp|Q89PK9|Y3471_BRAJA Uncharacterized transporter bll3471 OS=Bra...    30   5.0  
sp|P84092|AP2M1_RAT AP-2 complex subunit mu-1 OS=Rattus norvegic...    30   6.5  
sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu-1 OS=Mus musculus ...    30   6.5  
sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu-1 OS=Macaca fascic...    30   6.5  
sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu-1 OS=Homo sapiens ...    30   6.5  
sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu-1 OS=Bos taurus GN...    30   6.5  
sp|Q894B4|MRAW_CLOTE S-adenosyl-L-methionine-dependent methyltra...    30   8.5  

>sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu-1 OS=Pongo abelii
           GN=AP2M1 PE=2 SV=1
          Length = 435

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 5/158 (3%)
 Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
                 G  +P C     D+   E  GK T  E SK G           +++ A +    
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
           HQ +      L  +  E+S+  +   GE    R RT K
Sbjct: 249 HQCV-----RLSKSDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q96PV4|PNMA5_HUMAN Paraneoplastic antigen-like protein 5 OS=Homo
           sapiens GN=PNMA5 PE=2 SV=2
          Length = 448

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
 Frame = -1

Query: 503 LLALEAPVRKTREEYDQIILAGKAALGEEVSSGR-YRR----KKVFAQGLEDGGNKITSA 339
           LL +  P+  +  E    + AG   L      GR +RR    K VF + L D  N  T  
Sbjct: 21  LLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRREDNAKAVFIE-LADTVNYTTLP 79

Query: 338 GHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENY-----GKSTTSEISKLG-----GVI 189
            H   KGG  E+V +P+N   + L      SR NY     G+S T     LG        
Sbjct: 80  SHIPGKGGSWEVVVKPRNPDDEFL------SRLNYFLKDEGRSMTDVARALGCCSLPAES 133

Query: 188 LENVLRPRRKAPAQNPSK 135
           L+  + P+ ++P   P K
Sbjct: 134 LDAEVMPQVRSPPLEPPK 151


>sp|Q89PK9|Y3471_BRAJA Uncharacterized transporter bll3471
           OS=Bradyrhizobium japonicum GN=bll3471 PE=3 SV=1
          Length = 562

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = -1

Query: 278 GKVLPICDQNSRENYGKSTTSEISKLGG----VILENVLRPRRKAPAQNPSK---GHQII 120
           G VL +   N R  +G+S      ++GG    V L  + R  R+AP    ++   G  + 
Sbjct: 300 GNVLDVLVDN-RNLHGRSIRDVADRIGGDARGVFLRALTRHGREAPLSADTRVYVGDVMT 358

Query: 119 LAGKAA-LEHAAVEKSVQIMKRAGEILRSRDRTE 21
           L G    +E AA        K+ G+I+RS DRT+
Sbjct: 359 LVGSTRNIERAA--------KQVGQIVRSGDRTD 384


>sp|P84092|AP2M1_RAT AP-2 complex subunit mu-1 OS=Rattus norvegicus
           GN=Ap2m1 PE=1 SV=1
          Length = 435

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
 Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
                 G  +P C     D+   E  GK T  E SK G           +++ A +    
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
           HQ +      L     E+S+  +   GE    R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu-1 OS=Mus musculus
           GN=Ap2m1 PE=1 SV=1
          Length = 435

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
 Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
                 G  +P C     D+   E  GK T  E SK G           +++ A +    
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
           HQ +      L     E+S+  +   GE    R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu-1 OS=Macaca
           fascicularis GN=AP2M1 PE=2 SV=1
          Length = 435

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
 Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
                 G  +P C     D+   E  GK T  E SK G           +++ A +    
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
           HQ +      L     E+S+  +   GE    R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu-1 OS=Homo sapiens
           GN=AP2M1 PE=1 SV=2
          Length = 435

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
 Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
                 G  +P C     D+   E  GK T  E SK G           +++ A +    
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
           HQ +      L     E+S+  +   GE    R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu-1 OS=Bos taurus
           GN=AP2M1 PE=2 SV=1
          Length = 435

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
 Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKITSAGHRMFKGGVSEMVT 297
           +T+EE  QI       +G      +YRR ++F   LE   N + S   ++    VS  V 
Sbjct: 143 QTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE-SVNLLMSPQGQVLSAHVSGRVV 201

Query: 296 RPKNRFGKVLPIC-----DQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKG 132
                 G  +P C     D+   E  GK T  E SK G           +++ A +    
Sbjct: 202 MKSYLSG--MPECKFGMNDKIVIEKQGKGTADETSKSG-----------KQSIAIDDCTF 248

Query: 131 HQIILAGKAALEHAAVEKSVQIMKRAGEILRSRDRTEK 18
           HQ +      L     E+S+  +   GE    R RT K
Sbjct: 249 HQCV-----RLSKFDSERSISFIPPDGEFELMRYRTTK 281


>sp|Q894B4|MRAW_CLOTE S-adenosyl-L-methionine-dependent
           methyltransferase mraW OS=Clostridium tetani GN=mraW
           PE=3 SV=1
          Length = 310

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 22/82 (26%), Positives = 37/82 (45%)
 Frame = -1

Query: 290 KNRFGKVLPICDQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKGHQIILAG 111
           + RF K +      SREN    TT E+  +    +    R     PA+   +  +I + G
Sbjct: 156 EERFAKRISNFIVESRENKKIETTGELVDIIKRAIPAKFRREGPHPAKRTFQAIRIEVNG 215

Query: 110 KAALEHAAVEKSVQIMKRAGEI 45
           +  + + A+E SV+ +K  G I
Sbjct: 216 ELEILNKAIEDSVKSLKSGGRI 237
tr_hit_id B3S250
Definition tr|B3S250|B3S250_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens
Align length 91
Score (bit) 37.4
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919179|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B06.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3S250|B3S250_TRIAD Putative uncharacterized protein OS=Trich...    37   0.43 
tr|O17873|O17873_CAEEL Protein F46C5.6, partially confirmed by t...    36   1.3  
tr|A8WSK7|A8WSK7_CAEBR Putative uncharacterized protein OS=Caeno...    36   1.3  
tr|Q0FHW8|Q0FHW8_9RHOB Probable phosphopyruvate hydratase OS=Ros...    35   2.8  
tr|A8LJL9|A8LJL9_DINSH Peptidase S58 DmpA OS=Dinoroseobacter shi...    34   3.7  
tr|B0UFR0|B0UFR0_METS4 ABC-type multidrug transport system ATPas...    33   6.2  
tr|Q8CV02|Q8CV02_OCEIH Isochorismate synthase OS=Oceanobacillus ...    33   8.1  

>tr|B3S250|B3S250_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_57926 PE=4 SV=1
          Length = 834

 Score = 37.4 bits (85), Expect = 0.43
 Identities = 24/91 (26%), Positives = 42/91 (46%)
 Frame = -1

Query: 368 EDGGNKITSAGHRMFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKLGGVI 189
           E+ GNKI+ A H +F+   S+M +  K    K   I    S+    K+TTS+++      
Sbjct: 127 ENDGNKISQANHNIFQ---SKMKSTTKENADKPRRITRSKSKAIASKATTSKVTTKTDQA 183

Query: 188 LENVLRPRRKAPAQNPSKGHQIILAGKAALE 96
           ++ V   +  AP     +  +I++ G    E
Sbjct: 184 MKKVANKKPTAPTVKNLRNRKIVIPGSKPKE 214


>tr|O17873|O17873_CAEEL Protein F46C5.6, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=F46C5.6
           PE=4 SV=5
          Length = 945

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = -1

Query: 329 MFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKL 201
           +  GG S+++ +  +   K+LPI  +N +EN G++T  ++ +L
Sbjct: 457 LLHGGSSDVIAKISHNLSKILPILYENVKENPGRTTVQQVDRL 499


>tr|A8WSK7|A8WSK7_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG03194 PE=4 SV=2
          Length = 960

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
 Frame = -1

Query: 329 MFKGGVSEMVTRPKNRFGKVLPICDQNSRENYGKSTTSEISKLGGVILENVLRPRRKAPA 150
           +  GG S+++ +  +   K+LPI  +N ++N GK+T  ++ +L  +    +LR       
Sbjct: 464 LLHGGSSDVIAKISHNLSKILPILYENVKDNPGKTTIQQLDRL-LIGCNQILR------T 516

Query: 149 QNPSKGHQIILAGKAAL-----EHAAVEKSVQIMKRAGEILRSR 33
            +  + H+ +L    AL     E   V+  V ++K+  E+L  R
Sbjct: 517 SSSWRSHEALLKSLKALSGCIEEETIVDTFVPLLKK--EVLNVR 558


>tr|Q0FHW8|Q0FHW8_9RHOB Probable phosphopyruvate hydratase
           OS=Roseovarius sp. HTCC2601 GN=R2601_24569 PE=4 SV=1
          Length = 281

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
 Frame = -1

Query: 446 LAGKAALGEEVS----SGRY-RRKKVFAQGLEDGGNKITSAGHRM---FKGGVSEMVTRP 291
           LAG A LG E +    +GR+ RR+++F QG+ED      +  HR+   F+    +     
Sbjct: 52  LAGAAELGGEAALVAETGRHARRRELFLQGVED----FRAHAHRLADVFRADRHDHEFLD 107

Query: 290 KNRFGKVLPICD---QNSRENYGKSTTS-EISKLGGVILENVLRPRRKAPAQNPSKGHQI 123
            +R  +VL   D      RE+ G    +  I +LGG +   +     +A A+N       
Sbjct: 108 VDRVVRVLAAIDDVHHRHREDAGGGAANVAIERLGGELGRGL--GGGEADAENGVGAETA 165

Query: 122 ILAGKAALEHAAVE----KSVQIMKRAGEILRSR 33
           ++ G   L+H AV+      V+  +R G++   R
Sbjct: 166 LVVGAVELDHRAVDGFLLGGVEAHQRLGDLAVDR 199


>tr|A8LJL9|A8LJL9_DINSH Peptidase S58 DmpA OS=Dinoroseobacter shibae
           (strain DFL 12) GN=Dshi_2889 PE=4 SV=1
          Length = 327

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -1

Query: 476 KTREEYDQIILAGKAALGEEVSSGRYRRKKVFAQGLEDGGNKI----TSAGHRMFKGGVS 309
           KT E+ D ++L+G +ALG + +SG     +   +G + GG ++     +    +  GG  
Sbjct: 65  KTVEQVDALVLSGGSALGLDAASGVADALRAAGRGFDVGGQRVPIVPAAILFDLLNGGDK 124

Query: 308 EMVTRPKNRFGK 273
           + +  P N  G+
Sbjct: 125 DWMVNPYNWLGR 136


>tr|B0UFR0|B0UFR0_METS4 ABC-type multidrug transport system ATPase
           and permease components-like protein OS=Methylobacterium
           sp. (strain 4-46) GN=M446_2335 PE=4 SV=1
          Length = 901

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 254 QNSRENYGKSTTSEISKLGGVILENVLRPRRKAPAQNPSKGHQIILAGKAALEHAAVEKS 75
           QN R         EI +L   +       RR APA +  +G  I+LAG AA + A+ E+ 
Sbjct: 328 QNERRRAALPAFGEIGRLVAALEARAKATRRLAPAASFPRGGPIVLAGAAAYDPASGERL 387

Query: 74  V 72
           +
Sbjct: 388 I 388


>tr|Q8CV02|Q8CV02_OCEIH Isochorismate synthase OS=Oceanobacillus
           iheyensis GN=dhbC PE=4 SV=1
          Length = 398

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = -1

Query: 314 VSEMVTRPKNRFGKVLPICDQNSRENY-GKSTTSEISKLGGVILENVL---RPRRKAPAQ 147
           V  ++T   +++   L   ++N  +   G S    ISK G +++ N L   RPR+K P +
Sbjct: 161 VQNLITHNHDKYNFALNTSEENKEKTLIGASPELLISKKGSIVVSNPLAGSRPRQKDPEK 220

Query: 146 NPSKGHQIILAGKAALEHAAVEKSV 72
           +     ++  + K   EH  V +SV
Sbjct: 221 DVLMAQELRHSEKDLHEHKLVVQSV 245