NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919181
Clone id YMU001_000122_B08
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACAATCCTTGACCTTGACCACAATCGTATCGGAGCACCGGTCCGTCAGCATACCCAACTT
CCAATGCACTGCAAGAGATAGACATTCTCGACTAGGTTCTCCCCGAGCACTTATTGCTCT
ATGAAGTGCACCATATTCGGGTACCTGGTTGAAGCCCAAAAACTCCCAGATGGCACACGG
ACCGGGACGACCATACTGTTACGGAATCGACCCCCGGTGTAACTTCAATGGGCAATATCT
TGGCAGCCACAGCTCCAAATGGCAATCTGGAAAGACCAGCATGCTCCACATGACGAGCAC
TTTAGGCCCATGCATTCACTTCAACTCTGGCCCTTCATCTACGACTACCCAATCTTCATC
TGCGACTACCCAATCTGGCACGAATTTGCAAACACCTCCAACTTCAAACTCAATTATCTT
GTACTTTGTAGCTCTGTTTGATGAGTTGTTTGAACCTGCCCATTTAGCACTTCAAGCTCT
ACATATCCAAGCCAAAAATCAA
■■Homology search results ■■ -
sp_hit_id Q3J5V8
Definition sp|Q3J5V8|RECO_RHOS4 DNA repair protein recO OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Align length 52
Score (bit) 33.5
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919181|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B08.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3J5V8|RECO_RHOS4 DNA repair protein recO OS=Rhodobacter spha...    33   0.58 
sp|A3PGG1|RECO_RHOS1 DNA repair protein recO OS=Rhodobacter spha...    33   0.58 
sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain D...    32   1.3  
sp|Q5LNK7|RECO_SILPO DNA repair protein recO OS=Silicibacter pom...    32   1.7  
sp|Q90592|GTR2_CHICK Solute carrier family 2, facilitated glucos...    31   2.8  
sp|Q16AI3|RECO_ROSDO DNA repair protein recO OS=Roseobacter deni...    31   3.7  
sp|Q62889|NLGN3_RAT Neuroligin-3 OS=Rattus norvegicus GN=Nlgn3 P...    31   3.7  
sp|Q8BYM5|NLGN3_MOUSE Neuroligin-3 OS=Mus musculus GN=Nlgn3 PE=1...    31   3.7  
sp|Q9NZ94|NLGN3_HUMAN Neuroligin-3 OS=Homo sapiens GN=NLGN3 PE=1...    31   3.7  
sp|Q1GDH8|RECO_SILST DNA repair protein recO OS=Silicibacter sp....    30   4.9  
sp|Q2IWU2|RECO_RHOP2 DNA repair protein recO OS=Rhodopseudomonas...    30   4.9  
sp|Q9Z238|CCNE2_MOUSE G1/S-specific cyclin-E2 OS=Mus musculus GN...    30   4.9  
sp|Q136V6|RECO_RHOPS DNA repair protein recO OS=Rhodopseudomonas...    30   6.4  

>sp|Q3J5V8|RECO_RHOS4 DNA repair protein recO OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=recO PE=3 SV=2
          Length = 238

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 301 SARHVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           +A H  HAG+ R   G  + KI PI + PG      W +R   H+G F ++P
Sbjct: 26  TAAHGRHAGVVR---GGASRKIAPI-LQPGAQLDLTWKARLDEHMGAFTVEP 73


>sp|A3PGG1|RECO_RHOS1 DNA repair protein recO OS=Rhodobacter
           sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=recO PE=3
           SV=1
          Length = 239

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 301 SARHVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           +A H  HAG+ R   G  + KI PI + PG      W +R   H+G F ++P
Sbjct: 27  TAAHGRHAGVVR---GGASRKIAPI-LQPGAQLDLTWKARLDEHMGAFTVEP 74


>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM
            16790) GN=hmu PE=4 SV=1
          Length = 9159

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 177  TDRDDHTVTESTPGVTSMGNILAATAPNGNL 269
            TD  DHTVT STP   S G +     P G L
Sbjct: 7674 TDSHDHTVTGSTPTFVSSGTVTTPENPGGTL 7704


>sp|Q5LNK7|RECO_SILPO DNA repair protein recO OS=Silicibacter
           pomeroyi GN=recO PE=3 SV=1
          Length = 241

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 301 SARHVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           +A H  HAG+ R   G  + +I PI + PG      W +R   HLG F ++P
Sbjct: 26  TASHGRHAGVVR---GGTSRRIAPI-LQPGAQLDLSWRARLEDHLGSFTVEP 73


>sp|Q90592|GTR2_CHICK Solute carrier family 2, facilitated glucose
           transporter member 2 OS=Gallus gallus GN=SLC2A2 PE=2
           SV=1
          Length = 533

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 123 EVHHIRVPG*SPKTPR-WHTDRDDHTVTESTPGVTSMGNILAATAPNGNLERPACS 287
           E H+ R+ G  P      +T RD+ T+T + PG  + G+     AP+   E P  S
Sbjct: 46  EAHYGRMLGAIPMVRHATNTSRDNATITVTIPGTEAWGSSEGTLAPSAGFEDPTVS 101


>sp|Q16AI3|RECO_ROSDO DNA repair protein recO OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=recO PE=3
           SV=1
          Length = 241

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 292 HVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           H  HAG+ R   G  + KI PI + PG      W +R   H+G F ++P
Sbjct: 29  HGRHAGVVR---GGTSRKIAPI-LQPGAQLDLTWRARLEDHIGSFLVEP 73


>sp|Q62889|NLGN3_RAT Neuroligin-3 OS=Rattus norvegicus GN=Nlgn3 PE=1
           SV=1
          Length = 848

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 11  TLTTIVSEHRSVSIPNFQCTARDRHSRLGSPRALIAL*SAPYSGTWLKPKNSQMAHGPGR 190
           TL  + ++H+ V          D H+R GSP    A     +  + +KP  S  AHG   
Sbjct: 473 TLVALFTDHQWVEP---SVVTADLHARYGSPTYFYAF--YHHCQSLMKPAWSDAAHGDEV 527

Query: 191 PYCYGI 208
           PY +G+
Sbjct: 528 PYVFGV 533


>sp|Q8BYM5|NLGN3_MOUSE Neuroligin-3 OS=Mus musculus GN=Nlgn3 PE=1
           SV=1
          Length = 825

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 11  TLTTIVSEHRSVSIPNFQCTARDRHSRLGSPRALIAL*SAPYSGTWLKPKNSQMAHGPGR 190
           TL  + ++H+ V          D H+R GSP    A     +  + +KP  S  AHG   
Sbjct: 450 TLVALFTDHQWVEP---SVVTADLHARYGSPTYFYAF--YHHCQSLMKPAWSDAAHGDEV 504

Query: 191 PYCYGI 208
           PY +G+
Sbjct: 505 PYVFGV 510


>sp|Q9NZ94|NLGN3_HUMAN Neuroligin-3 OS=Homo sapiens GN=NLGN3 PE=1
           SV=2
          Length = 848

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 11  TLTTIVSEHRSVSIPNFQCTARDRHSRLGSPRALIAL*SAPYSGTWLKPKNSQMAHGPGR 190
           TL  + ++H+ V          D H+R GSP    A     +  + +KP  S  AHG   
Sbjct: 473 TLVALFTDHQWVEP---SVVTADLHARYGSPTYFYAF--YHHCQSLMKPAWSDAAHGDEV 527

Query: 191 PYCYGI 208
           PY +G+
Sbjct: 528 PYVFGV 533


>sp|Q1GDH8|RECO_SILST DNA repair protein recO OS=Silicibacter sp.
           (strain TM1040) GN=recO PE=3 SV=1
          Length = 241

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 292 HVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           H  HAGL R   G  + K+ P  + PG      WS+R   HLG +  +P
Sbjct: 29  HGLHAGLVR---GGASRKMAP-HLQPGAQLDLTWSARLEDHLGTYKAEP 73
tr_hit_id A4EEZ6
Definition tr|A4EEZ6|A4EEZ6_9RHOB DNA repair protein RecO OS=Roseobacter sp. CCS2
Align length 52
Score (bit) 36.2
E-value 0.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919181|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B08.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4EEZ6|A4EEZ6_9RHOB DNA repair protein RecO OS=Roseobacter sp...    36   0.90 
tr|A3VCD2|A3VCD2_9RHOB DNA repair protein RecO OS=Rhodobacterale...    36   0.90 
tr|A3V348|A3V348_9RHOB DNA repair protein RecO OS=Loktanella ves...    36   0.90 
tr|A8SEF2|A8SEF2_9FIRM Putative uncharacterized protein OS=Faeca...    33   9.7  
tr|Q4DVE2|Q4DVE2_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.7  
tr|A4EEC0|A4EEC0_9RHOB Putative uncharacterized protein OS=Roseo...    33   9.9  

>tr|A4EEZ6|A4EEZ6_9RHOB DNA repair protein RecO OS=Roseobacter sp.
           CCS2 GN=RCCS2_06264 PE=4 SV=1
          Length = 244

 Score = 36.2 bits (82), Expect = 0.90
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 301 SARHVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           SA H  HAG+ R   G  + K+ P+ + PG      W +R   HLG F ++P
Sbjct: 27  SALHGRHAGVVR---GGASRKLAPV-LQPGAQLSVAWKARLESHLGSFAVEP 74


>tr|A3VCD2|A3VCD2_9RHOB DNA repair protein RecO OS=Rhodobacterales
           bacterium HTCC2654 GN=recO PE=4 SV=1
          Length = 246

 Score = 36.2 bits (82), Expect = 0.90
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = -1

Query: 301 SARHVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           +A H  HAG+ R   G V+ KI PI + PG     VW +R   H+G F ++P
Sbjct: 29  TAEHGRHAGVVR---GGVSRKIAPI-LQPGSQLDLVWRARLEEHIGAFTVEP 76


>tr|A3V348|A3V348_9RHOB DNA repair protein RecO OS=Loktanella
           vestfoldensis SKA53 GN=recO PE=4 SV=1
          Length = 243

 Score = 36.2 bits (82), Expect = 0.90
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -1

Query: 301 SARHVEHAGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 146
           SA H  HAG+ R   G  + KI P+ + PG      W++R   HLG F ++P
Sbjct: 27  SANHGRHAGVVR---GGASRKIAPL-IQPGAQVNVAWAARLDDHLGSFTVEP 74


>tr|A8SEF2|A8SEF2_9FIRM Putative uncharacterized protein
           OS=Faecalibacterium prausnitzii M21/2
           GN=FAEPRAM212_03533 PE=4 SV=1
          Length = 338

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 RDDHTVTESTPGVTSMGNILAATAPNGNLERPAC 284
           RD H + ++TPG+  +GNI     PNG ++   C
Sbjct: 191 RDAHQLLKTTPGIRFVGNIEPRDVPNGEVDVVVC 224


>tr|Q4DVE2|Q4DVE2_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506133.179 PE=4 SV=1
          Length = 344

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 18/44 (40%)
 Frame = -3

Query: 320 SECMGLKCSSCGACWSFQIA------------------IWSCGC 243
           + C G +C+ CGACW  ++A                  ++SCGC
Sbjct: 139 AHCSGFECTFCGACWQLRVAAVVFFRGHEEGERECTPSLFSCGC 182


>tr|A4EEC0|A4EEC0_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. CCS2 GN=RCCS2_05134 PE=4 SV=1
          Length = 746

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 17/75 (22%), Positives = 35/75 (46%)
 Frame = +1

Query: 136 FGYLVEAQKLPDGTRTGTTILLRNRPPV*LQWAISWQPQLQMAIWKDQHAPHDEHFRPMH 315
           F  +++A+ +  G  TG   + R R P    W ++   ++      D HA + +H   M+
Sbjct: 382 FSSVIDAEGIRRGEETGEKYIKRGRRP---NWLLALPAEIDRRFVLDVHAIYRKHLFDMN 438

Query: 316 SLQLWPFIYDYPIFI 360
           +L +   + D+  F+
Sbjct: 439 ALSIDEMVADFDSFL 453