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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919184
Clone id YMU001_000122_B11
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTACATCAGGCATGTCTTTTCCCCATGCATCTTTGCGTACTTCCACACCTGGATTGCAA
AGCACCATGAATGCAGTACATTGCTCGTTCTTATCAGTCCGGTCTCTACCATTCAAAGTC
TTCTCATGCGCACTCATACTGCTCTTCCACGTGTTGCTTAGTCCCCTTCGACGAGGGGGG
ACCCCTCGGCCATCCATCGCCCGGGTCCCCATTATCATGCATCAGTTGCGCGCTATCGTG
CATCAAACGATCCTCGCACATTTCCACTCTCATTAGACCTCCTTCGACCTTATTGCAGGC
TTGTATGGTGGGCTCATTAGCCCAAGGCAAGAGGCCAGCCCCGGCCGCCATCCGCAATTC
GATGGCATCCCTTCGTGCCACATGTCATAGGTGCTCCGCATGTCATCCCCAATAAACTCA
TACACCCTCCATCCGGTTGTAATGTGCCTGGGCACACATTCCAAGCAATCCACAAAGTGA
GCACTCTCTGGCTCGACGAAGCACGTCCATTCACCTTCGTGTTGACCTTAGTCATGCTAT
AAGCATCCTCCGTCTCTCCTCCCGGA
■■Homology search results ■■ -
sp_hit_id Q61087
Definition sp|Q61087|LAMB3_MOUSE Laminin subunit beta-3 OS=Mus musculus
Align length 25
Score (bit) 33.1
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919184|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B11.
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61087|LAMB3_MOUSE Laminin subunit beta-3 OS=Mus musculus GN=...    33   0.98 
sp|Q5T481|RBM20_HUMAN Probable RNA-binding protein 20 OS=Homo sa...    32   2.9  
sp|A8XI14|R1AP1_CAEBR RAG1-activating protein 1 homolog OS=Caeno...    30   6.4  
sp|Q6CXP4|LST4_KLULA Protein LST4 OS=Kluyveromyces lactis GN=LST...    30   6.4  
sp|Q135C9|Y3084_RHOPS UPF0060 membrane protein RPD_3084 OS=Rhodo...    30   8.3  

>sp|Q61087|LAMB3_MOUSE Laminin subunit beta-3 OS=Mus musculus
           GN=Lamb3 PE=2 SV=1
          Length = 1168

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 431 WRVYEFIGDDMRSTYDMWHEGMPSN 357
           WRVY+++  D  ST+   H+G P N
Sbjct: 143 WRVYQYLATDCASTFPQVHQGQPKN 167


>sp|Q5T481|RBM20_HUMAN Probable RNA-binding protein 20 OS=Homo
           sapiens GN=RBM20 PE=2 SV=2
          Length = 1125

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 183 PSAIHRPGPHYHASVARYRASNDPRTFPLSLDLLRPYCRLVWWAH*PKARGQPRPPSAIR 362
           PS I   GPH HA V ++ A+     FP +     P  +       P      +PPSA+ 
Sbjct: 140 PSVI--TGPHGHAGVPQHAAAIPSTRFPSNAIAFSPPSQT--RGPGPSMNLPNQPPSAMV 195

Query: 363 WHPF---VPHVIGAPHVI 407
            HPF   +P   G P VI
Sbjct: 196 MHPFTGVMPQTPGQPAVI 213


>sp|A8XI14|R1AP1_CAEBR RAG1-activating protein 1 homolog
           OS=Caenorhabditis briggsae GN=CBG13500 PE=3 SV=1
          Length = 293

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 73  AVHCSFLSVRSLPFKVFSCALILL 144
           AV+C F  + SLP K F+C LIL+
Sbjct: 79  AVYCIFFLIYSLPKKTFTCQLILV 102


>sp|Q6CXP4|LST4_KLULA Protein LST4 OS=Kluyveromyces lactis GN=LST4
           PE=3 SV=1
          Length = 714

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = +3

Query: 150 RVA*SPSTRGD------PSAIHR--PGPHYHASVARYRASNDPRTFPLSLDLLRPYCRLV 305
           +VA SPS+R +      P  +HR      +H        +   R  P     +  Y    
Sbjct: 419 KVAQSPSSRSNESSHEVPPILHRNSSSTSFHQQAVLGNINGSQRVTPQPSPTIAEYEEYP 478

Query: 306 WWAH*PKARGQPRPPSAI 359
           W++  P AR QPRP   I
Sbjct: 479 WFSPSPIARDQPRPEKRI 496


>sp|Q135C9|Y3084_RHOPS UPF0060 membrane protein RPD_3084
           OS=Rhodopseudomonas palustris (strain BisB5) GN=RPD_3084
           PE=3 SV=1
          Length = 107

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -2

Query: 544 AYSMTKVNTKVNGRASSSQ-------RVLTLWIAWNVCPGTLQPDGGCMSLLG 407
           AY +T V ++  GRA +S         ++ LW   NV P      GGC+ L+G
Sbjct: 45  AYLLTLVESQAAGRAYASYGGIYIVASLVWLWSVENVRPDRWDVTGGCVCLIG 97
tr_hit_id B6SEG1
Definition tr|B6SEG1|B6SEG1_9ACTO AlnO OS=Streptomyces sp. CM020
Align length 52
Score (bit) 35.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919184|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_B11.
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SEG1|B6SEG1_9ACTO AlnO OS=Streptomyces sp. CM020 GN=alnO PE...    35   2.9  
tr|Q2GN01|Q2GN01_CHAGB Putative uncharacterized protein OS=Chaet...    35   2.9  
tr|A1D2M6|A1D2M6_NEOFI Mucin, putative OS=Neosartorya fischeri (...    35   2.9  
tr|A5FXC5|A5FXC5_ACICJ DegT/DnrJ/EryC1/StrS aminotransferase OS=...    34   6.4  
tr|A8Y4J9|A8Y4J9_CAEBR Putative uncharacterized protein OS=Caeno...    34   6.4  
tr|Q0CUT5|Q0CUT5_ASPTN Predicted protein OS=Aspergillus terreus ...    34   6.4  
tr|Q30W21|Q30W21_DESDG Putative uncharacterized protein OS=Desul...    33   8.3  
tr|Q4WKQ6|Q4WKQ6_ASPFU Kinesin family protein OS=Aspergillus fum...    33   8.3  
tr|B0XRD0|B0XRD0_ASPFC Kinesin family protein OS=Aspergillus fum...    33   8.3  
tr|A2QB61|A2QB61_ASPNC Catalytic activity: 4 Benzenediol + O2 = ...    33   8.3  

>tr|B6SEG1|B6SEG1_9ACTO AlnO OS=Streptomyces sp. CM020 GN=alnO PE=4
           SV=1
          Length = 152

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
 Frame = +3

Query: 390 GAPHVIP-------NKLIHPPSGCNVPGHTFQAIHKVSTLWLDEARPFTFVL 524
           G+PHV+P       + +I+     +V G + Q   +++ LW DE  PF+FVL
Sbjct: 33  GSPHVVPVGVIMDGDDIIYTCQKDSVKGRSLQRDGRIAMLWDDERPPFSFVL 84


>tr|Q2GN01|Q2GN01_CHAGB Putative uncharacterized protein OS=Chaetomium
            globosum GN=CHGG_10653 PE=4 SV=1
          Length = 2183

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -2

Query: 436  PDGGCMSLLGMTCGAPMTCG----TKGCHRIADGGR 341
            PDGGC  L    C AP+ CG    T  CHR+ D  R
Sbjct: 1089 PDGGCTEL----CDAPLKCGVHKCTSRCHRVVDHSR 1120


>tr|A1D2M6|A1D2M6_NEOFI Mucin, putative OS=Neosartorya fischeri
           (strain ATCC 1020 / DSM 3700 / NRRL 181) GN=NFIA_013580
           PE=4 SV=1
          Length = 638

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 5/147 (3%)
 Frame = +3

Query: 78  TLLVLISPVSTIQSL-LMRTHTALPRVA*SPSTRGDPSAIHRPGPHYHASVARYRASNDP 254
           T+  +I P ST+ +   M +  ALP V  +P++       + PGP  H        S+  
Sbjct: 406 TVPQIIPPASTLPATSAMTSLPALPPVI-TPTSVPSSHQAYIPGPIPHLPRPNLPVSSHT 464

Query: 255 RTFPLSLDLLRPYCRLVWWAH*PKARGQPRPP----SAIRWHPFVPHVIGAPHVIPNKLI 422
               +S    +P          P   G+  PP    S+  W P VPH+   P V+ N + 
Sbjct: 465 LVPSISATTPQP----------PSTAGRAMPPATYSSSTTWAPSVPHMTTVPPVL-NGIY 513

Query: 423 HPPSGCNVPGHTFQAIHKVSTLWLDEA 503
           H P     PG    + + +S+  +  A
Sbjct: 514 HTPISLPDPGRYHASPYGMSSATVSPA 540


>tr|A5FXC5|A5FXC5_ACICJ DegT/DnrJ/EryC1/StrS aminotransferase
           OS=Acidiphilium cryptum (strain JF-5) GN=Acry_1041 PE=4
           SV=1
          Length = 384

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
 Frame = +3

Query: 54  IAKHHECSTLLVLISPVST--------IQSLLMRTHTALPRVA*SPSTRGDPSAIHRPGP 209
           IA+ ++ +   V  +PV          I ++L+R   A   +      RG PSA++ P P
Sbjct: 269 IARRYDEALASVFATPVRVPESSSAWAIYAVLLRDGAAREAMQARLRARGVPSAVYYPKP 328

Query: 210 HYHASVARYRASNDPRTFPLSLDL 281
            +H     YRAS+D    P+S D+
Sbjct: 329 LHHQPA--YRASHDGAALPVSEDV 350


>tr|A8Y4J9|A8Y4J9_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG23163 PE=4 SV=2
          Length = 603

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 24  PCIFAYFHTWIAKHHECSTLLVLISPVSTIQSLLM 128
           P  F  F      H++CS++ +LISPV+TIQ L +
Sbjct: 248 PVFFLVFSVATGYHNQCSSVDILISPVTTIQRLTL 282


>tr|Q0CUT5|Q0CUT5_ASPTN Predicted protein OS=Aspergillus terreus
           (strain NIH 2624) GN=ATEG_02549 PE=4 SV=1
          Length = 308

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
 Frame = +3

Query: 84  LVLISPVSTIQSLLMRTHTALPRVA*SPSTRGDPSAIHRPGPHYHASVARYRASNDPRTF 263
           L L S  +TI S    + T++PR+   P T  D  A H   PH   S A +++   P T 
Sbjct: 149 LTLPSAPATITS----SSTSVPRL---PDTPADIGAAHSHPPHDSHSAASFQSFPPPSTL 201

Query: 264 PLSLDLLRPYCRLVWWAH*PKARGQPRP---PSAIRWHPFVPH---VIGAPHVIP 410
           P    ++ P     ++   P     P P   P+ +   P  PH      APH+ P
Sbjct: 202 PSQSPVMPPQDVRDFYNQ-PSVPPTPAPAPAPAPVMPPPARPHAPAAAAAPHISP 255


>tr|Q30W21|Q30W21_DESDG Putative uncharacterized protein
           OS=Desulfovibrio desulfuricans (strain G20) GN=Dde_3331
           PE=4 SV=1
          Length = 318

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
 Frame = +1

Query: 46  TPGLQSTMNAVHCSFLSVRS-LPFKVFSCALILLFHVLLSPLRRGGTPRPSIARVPIIMH 222
           T G+ +T +    + +  R  +P +  S   IL+F V +    R   PR +  R  +  H
Sbjct: 101 TTGVATTEDTAGATLIQTRHRIPEQPLSDGQILIFQVPIPEPLRWMEPRETETR-KMHAH 159

Query: 223 QLRAIVH----QTILAHFHSH*TSFDLIAGLYGGLISPRQEASPGRHPQFD 363
           Q   ++H    + I  H H   TSFD     Y  L++ R  ASP  +P+FD
Sbjct: 160 QEYGVMHVKLYEDIARHGHIA-TSFD-----YPVLVADRYIASPSPNPKFD 204


>tr|Q4WKQ6|Q4WKQ6_ASPFU Kinesin family protein OS=Aspergillus
           fumigatus GN=AFUA_1G01640 PE=3 SV=1
          Length = 457

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 357 IRWHPFVPHVIGAPHVIPNKLIHPPSGCNVPGHTFQAIHKVSTLWLDEARPFTFVLT 527
           +RW P  P     P +   +  HP S  +    T    HK+S  W  E+  FT + T
Sbjct: 8   VRWRPLAPSEANTPEIARTQHAHPTSNTSALSLTPPPAHKLSRPWKSES-AFTRIFT 63


>tr|B0XRD0|B0XRD0_ASPFC Kinesin family protein OS=Aspergillus
           fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163)
           GN=AFUB_002040 PE=3 SV=1
          Length = 457

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 357 IRWHPFVPHVIGAPHVIPNKLIHPPSGCNVPGHTFQAIHKVSTLWLDEARPFTFVLT 527
           +RW P  P     P +   +  HP S  +    T    HK+S  W  E+  FT + T
Sbjct: 8   VRWRPLAPSEANTPEIARTQHAHPTSNTSALSLTPPPAHKLSRPWKSES-AFTRIFT 63


>tr|A2QB61|A2QB61_ASPNC Catalytic activity: 4 Benzenediol + O2 = 4
           Benzosemiquinone + 2 H2O. OS=Aspergillus niger (strain
           CBS 513.88 / FGSC A1513) GN=An01g14010 PE=3 SV=1
          Length = 602

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 27/65 (41%), Positives = 38/65 (58%)
 Frame = +3

Query: 96  SPVSTIQSLLMRTHTALPRVA*SPSTRGDPSAIHRPGPHYHASVARYRASNDPRTFPLSL 275
           S VS+  +LL  T T +P  A +PS++ D + I R G HY+AS   YR +    +FPLSL
Sbjct: 400 SLVSSNYTLLNET-TIMPFPAETPSSKVDATHILRIG-HYNAS---YRWTEGNSSFPLSL 454

Query: 276 DLLRP 290
           +   P
Sbjct: 455 EAASP 459