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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919192
Clone id YMU001_000122_C09
Library
Length 492
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTCCAATTACACTTAGCCATCTTGAGCACGGGGCTGAGGAAAGAAATATACGGGAT
CATAAAAGCATTAATCACTCTAATCTGGCTTTGGAGGGGGAGGAGAACAAACTCCCATCT
TCTCATTTTCAAAATTATTTTTTCAAGGACCCATTGAAATCTTTGCCTGTGGGTTACGTA
CACCCCAACGGGGCCTCCCACGTGTTTGAATACACTCCCTTTTGAGATAATCTCTCCTGT
CCAAAATGCAGGGTCAAAAGAGTCGTTCTCTGAAAGGGATATTAGTCTTGACTTCTCTAT
ATTGCACGTGGATCCCGAGGCCACGGCAAATGTTTGCACAATCTCTAGATCTCTCCTGAC
AACTTGAGGGCACGCTTTCTATTCTATCCAAGAAACATTTCTTTATGACTTTCTTCCTTT
AGTGCAACGATTCTTTAGGTTTTGGTATGCTTCTACCAAGATATGCAAAGCCAATTCAAG
ATTCCTCCTTAT
■■Homology search results ■■ -
sp_hit_id Q6KHC8
Definition sp|Q6KHC8|SYFB_MYCMO Phenylalanyl-tRNA synthetase beta chain OS=Mycoplasma mobile
Align length 67
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919192|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_C09.
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6KHC8|SYFB_MYCMO Phenylalanyl-tRNA synthetase beta chain OS=...    32   1.6  
sp|O30085|COPB_ARCFU Probable copper-exporting P-type ATPase B O...    32   2.1  
sp|Q6KHH8|TRUB_MYCMO tRNA pseudouridine synthase B OS=Mycoplasma...    31   2.7  
sp|P09852|TOXR_PSEAE Exotoxin A regulatory protein OS=Pseudomona...    31   2.7  
sp|Q3ABY0|RUVB_CARHZ Holliday junction ATP-dependent DNA helicas...    31   3.5  
sp|Q14449|GRB14_HUMAN Growth factor receptor-bound protein 14 OS...    31   3.5  
sp|Q5ICW4|GRB14_BOVIN Growth factor receptor-bound protein 14 OS...    31   3.5  
sp|P49446|PTPRE_MOUSE Receptor-type tyrosine-protein phosphatase...    30   4.6  

>sp|Q6KHC8|SYFB_MYCMO Phenylalanyl-tRNA synthetase beta chain
           OS=Mycoplasma mobile GN=pheT PE=3 SV=1
          Length = 713

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +1

Query: 22  HLEHGAEERNIRDHKSINHSNLAL-----EGEENKLPSSHFQNYFFKDPLKSLPVGYVHP 186
           +++   E+ N  D   IN    AL     E   N++    F  + +K  L+     Y+HP
Sbjct: 532 NIKRKLEKINFFDFGMINEGKRALIFASNEKSFNEIKKDLFSLFSYKFELRKTKNNYLHP 591

Query: 187 NGASHVF 207
           N ++H+F
Sbjct: 592 NASAHIF 598


>sp|O30085|COPB_ARCFU Probable copper-exporting P-type ATPase B
           OS=Archaeoglobus fulgidus GN=copB PE=1 SV=1
          Length = 690

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 22  HLEHGAEERNIRDHKSINHSNLALEGEENKLPSSHFQNYFFKDPLKSLPVGYVHP 186
           H  HG EE +   H+ + HS  A  G+ +++    F+  F+   L ++P+  + P
Sbjct: 25  HEHHGHEEEHSAHHEKMKHS--ADHGDHHRMMMEDFKKRFYVSTLLTIPILILSP 77


>sp|Q6KHH8|TRUB_MYCMO tRNA pseudouridine synthase B OS=Mycoplasma
           mobile GN=truB PE=3 SV=1
          Length = 287

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 348 LEIVQTFAVASGSTCNIEKSRLISLSENDSFDPAFWTGEIISKGSVFKHV 199
           LEI+Q   +      N+ K  LI L   D+F   FW  E+I  G +  +V
Sbjct: 220 LEIIQ---LEKNQIENLSKGLLIDLKNEDNFYALFWKDEMIGFGQILNNV 266


>sp|P09852|TOXR_PSEAE Exotoxin A regulatory protein OS=Pseudomonas
           aeruginosa GN=toxR PE=1 SV=2
          Length = 259

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 25  LEHGAEERNIRDHKSINHSNLALEGEENKLPSSHFQNYFFKDPLKSLPVGYVHPNGASHV 204
           L  G   RN+R  KSI + N  L  ++ ++   +  N        +LP  + H    S  
Sbjct: 189 LAPGPLTRNLRQRKSIEYLNRLLVAQDIQMLCLNVDNEELHQQANALPFAFRHGRHYSEP 248

Query: 205 FEYTPF*DNLSCPKC 249
           F+  PF    S P C
Sbjct: 249 FQAWPF----SSPAC 259


>sp|Q3ABY0|RUVB_CARHZ Holliday junction ATP-dependent DNA helicase
           ruvB OS=Carboxydothermus hydrogenoformans (strain Z-2901
           / DSM 6008) GN=ruvB PE=3 SV=1
          Length = 339

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = -1

Query: 378 KACPQVVRRDLEIVQTFA-VASGSTCNIEKSRL-ISLSENDSF--DPAFWTGEIISKGSV 211
           +  P++  R L+ V+ +A V S    N+E ++  + L E D    DP   T  +I K  +
Sbjct: 214 RGTPRIANRLLKRVRDYAEVRSSGVINLENAKAALDLLEIDELGLDP---TDRLILKTMI 270

Query: 210 FKHVGGPVGV 181
            K+ GGPVG+
Sbjct: 271 EKYQGGPVGI 280


>sp|Q14449|GRB14_HUMAN Growth factor receptor-bound protein 14
           OS=Homo sapiens GN=GRB14 PE=1 SV=2
          Length = 540

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 22  HLEHGAEERNIRDHKSINH--SNLALEGEENKL--PSSHFQNYFFKDPLKSLP 168
           HL H   ER I DH+ +    SN  +E EENKL    ++ +  FFK+P+   P
Sbjct: 154 HLPHIGVERTIEDHELVIEVLSNWGIE-EENKLYFRKNYAKYEFFKNPMYFFP 205


>sp|Q5ICW4|GRB14_BOVIN Growth factor receptor-bound protein 14
           OS=Bos taurus GN=GRB14 PE=2 SV=1
          Length = 540

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 22  HLEHGAEERNIRDHKSINH--SNLALEGEENKL--PSSHFQNYFFKDPLKSLP 168
           HL H   ER I DH+ +    SN  +E EENKL    ++ +  FFK+P+   P
Sbjct: 154 HLPHVGLERTIEDHELVIEVLSNWGME-EENKLYFRKNYAKYEFFKNPMYFFP 205


>sp|P49446|PTPRE_MOUSE Receptor-type tyrosine-protein phosphatase
           epsilon OS=Mus musculus GN=Ptpre PE=1 SV=2
          Length = 699

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +1

Query: 1   FFPITLSHLEHGAEERNIRDHKSINHSNLALEGEENKLPSSHFQNYF 141
           FFPI + HLE     R+  D K           E N LPS H Q  F
Sbjct: 111 FFPIPVEHLEEEIRVRSADDCKRFRE-------EFNSLPSGHIQGTF 150
tr_hit_id Q2HVN2
Definition tr|Q2HVN2|Q2HVN2_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 115
Score (bit) 40.8
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919192|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_C09.
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HVN2|Q2HVN2_MEDTR Putative uncharacterized protein OS=Medic...    41   0.035
tr|Q9XE45|Q9XE45_ARATH Putative non-LTR retrolelement reverse tr...    40   0.078
tr|Q76IM1|Q76IM1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    37   0.66 
tr|A4Y738|A4Y738_SHEPC Alpha-N-arabinofuranosidase OS=Shewanella...    35   2.5  
tr|A2V541|A2V541_SHEPU Glycoside hydrolase, family 43 OS=Shewane...    35   2.5  
tr|A1RJF2|A1RJF2_SHESW Alpha-N-arabinofuranosidase OS=Shewanella...    34   3.3  
tr|Q9LDL8|Q9LDL8_ARATH Putative uncharacterized protein AT4g0883...    34   3.3  
tr|A7NSQ6|A7NSQ6_VITVI Chromosome chr18 scaffold_1, whole genome...    34   4.2  
tr|Q7S593|Q7S593_NEUCR Predicted protein (Putative uncharacteriz...    33   5.5  
tr|A5BXF3|A5BXF3_VITVI Putative uncharacterized protein OS=Vitis...    33   5.6  
tr|A7SR43|A7SR43_NEMVE Predicted protein OS=Nematostella vectens...    33   5.6  
tr|Q97X50|Q97X50_SULSO Allantoin permease OS=Sulfolobus solfatar...    33   5.6  
tr|Q81XU7|Q81XU7_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B3JCH9|B3JCH9_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B1UQQ1|B1UQQ1_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B1GPI6|B1GPI6_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B1EZI7|B1EZI7_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B0QNK6|B0QNK6_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B0Q3Y4|B0Q3Y4_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B0AX56|B0AX56_BACAN Putative uncharacterized protein OS=Bacil...    33   9.3  

>tr|Q2HVN2|Q2HVN2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula GN=MtrDRAFT_AC148816g33v2 PE=4 SV=2
          Length = 332

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = -1

Query: 342 IVQTFAVASGSTCNIEKSRLISLSENDSFDPAFWTGEIISKGSV-FKHVGGPVGVYVTHR 166
           I++ F + SG   N  KS L+ ++ ++ F          S GS+ FK++G PVG  +   
Sbjct: 64  ILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFLNCSAGSITFKYLGLPVGANMRSM 123

Query: 165 QRFQWVLEKIILKMRRWEFVLLPLQSQIRVINAFMIPYISFLSPVLKMAKCNWKK 1
             ++ ++E I  ++  W    +    +I ++N+ +     F    LKM    WK+
Sbjct: 124 STWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNSMPIFYLSFLKMLVGVWKR 178


>tr|Q9XE45|Q9XE45_ARATH Putative non-LTR retrolelement reverse
           transcriptase OS=Arabidopsis thaliana GN=At2g07650 PE=2
           SV=1
          Length = 732

 Score = 39.7 bits (91), Expect = 0.078
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
 Frame = -1

Query: 366 QVVRRDLEIVQTFAVASGSTCNIEKSRLISLSENDSFDPAFWTGEIISKGS-------VF 208
           +V+RR LE    F VASG   ++EKS+ I  SEN S D     G++IS  S       + 
Sbjct: 222 RVIRRVLE---RFCVASGQKVSLEKSK-IFFSENVSRD----LGKLISDESGISSTRELG 273

Query: 207 KHVGGPVGVYVTHRQRFQWVLEKIILKMRRWEFVLLPLQSQIRVINAFM 61
           K++G PV     ++  F  +LEK+  ++  W+   L L  ++ +  A +
Sbjct: 274 KYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVL 322


>tr|Q76IM1|Q76IM1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 PE=4
            SV=1
          Length = 1329

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 23/92 (25%), Positives = 48/92 (52%)
 Frame = -1

Query: 348  LEIVQTFAVASGSTCNIEKSRLISLSENDSFDPAFWTGEIISKGSVFKHVGGPVGVYVTH 169
            LE++  F   S +  N  KS  + +    + +P    G   +K   FK++G  +G  +  
Sbjct: 747  LELMNDFKKISATKINWSKSEALLVGNWHNAEPKLPEGLTWTKQG-FKYLGVFLGDELIM 805

Query: 168  RQRFQWVLEKIILKMRRWEFVLLPLQSQIRVI 73
            ++ F+ ++EK+  ++ RW+F+L  +  + RV+
Sbjct: 806  QKNFEDIIEKVRGRLERWKFLLSKISYKGRVL 837


>tr|A4Y738|A4Y738_SHEPC Alpha-N-arabinofuranosidase OS=Shewanella
           putrefaciens (strain CN-32 / ATCC BAA-453)
           GN=Sputcn32_2050 PE=3 SV=1
          Length = 628

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 369 PQVVRRDLEIVQTFAVASGSTCNIEKSRL--ISLSENDSFDPAFWT 238
           P++++RD    +TF V S S CN E   L  + L+ +D  DPA WT
Sbjct: 222 PEIIQRD---GRTFLVHSASFCNTEDYSLGVVELTGDDPMDPAAWT 264


>tr|A2V541|A2V541_SHEPU Glycoside hydrolase, family 43 OS=Shewanella
           putrefaciens 200 GN=Sput200DRAFT_0970 PE=3 SV=1
          Length = 628

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 369 PQVVRRDLEIVQTFAVASGSTCNIEKSRL--ISLSENDSFDPAFWT 238
           P++++RD    +TF V S S CN E   L  + L+ +D  DPA WT
Sbjct: 222 PEIIQRD---GRTFLVHSASFCNTEDYSLGVVELTGDDPMDPAAWT 264


>tr|A1RJF2|A1RJF2_SHESW Alpha-N-arabinofuranosidase OS=Shewanella
           sp. (strain W3-18-1) GN=Sputw3181_1962 PE=3 SV=1
          Length = 628

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 369 PQVVRRDLEIVQTFAVASGSTCNIEKSRL--ISLSENDSFDPAFWT 238
           P++++RD    +TF V S S CN E   L  + L+  D  DPA WT
Sbjct: 222 PEIIQRD---GRTFLVHSASFCNTEDYSLGVVELTGEDPMDPAAWT 264


>tr|Q9LDL8|Q9LDL8_ARATH Putative uncharacterized protein AT4g08830
           OS=Arabidopsis thaliana GN=AT4g08830 PE=2 SV=1
          Length = 947

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
 Frame = -1

Query: 366 QVVRRDLEIVQTFAVASGSTCNIEKSRLISLSENDSFDPAFWTGEIISKGS-------VF 208
           +V+RR   I++TF +ASG   +++KS+ I  S+N S D      ++ISK S       + 
Sbjct: 374 RVIRR---ILETFCIASGQKVSLDKSK-IFFSKNVSRD----LEKLISKESGIKSTRELG 425

Query: 207 KHVGGPVGVYVTHRQRFQWVLEKIILKMRRWE 112
           K++G P+     ++  F  VLE++  ++  W+
Sbjct: 426 KYLGMPILQRRINKDTFGEVLERVSSRLAGWK 457


>tr|A7NSQ6|A7NSQ6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014358001
           PE=3 SV=1
          Length = 261

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 27/81 (33%), Positives = 37/81 (45%)
 Frame = +2

Query: 173 VTYTPTGPPTCLNTLPFEIISPVQNAGSKESFSERDISLDFSILHVDPEATANVCTISRS 352
           V+ +P+   TC +  PF   SP+ ++  K++  E    L  S LH    +T N  T    
Sbjct: 17  VSCSPSKSSTCSSHPPFSPSSPIPDSSPKKTMDEVWKDLSLSSLHHHSISTVNNAT---- 72

Query: 353 LLTT*GHAFYSIQETFLYDFL 415
             T   HAF S   T L DFL
Sbjct: 73  --TNTHHAFRS---TLLQDFL 88


>tr|Q7S593|Q7S593_NEUCR Predicted protein (Putative uncharacterized
           protein B13D24.070) OS=Neurospora crassa GN=B13D24.070
           PE=4 SV=1
          Length = 206

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +2

Query: 176 TYTPTGPPTCLNTLPFEIISPVQNAGSKESF-----SERDISLDFSILH 307
           TY PTGP   L T P+  ++P    GS +++     +ERD      ILH
Sbjct: 76  TYRPTGPDNFLYTWPWNDLTPTLTLGSTQTYETTEAAERDTYAALMILH 124


>tr|A5BXF3|A5BXF3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033119 PE=4 SV=1
          Length = 1190

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
 Frame = -1

Query: 342 IVQTFAVASGSTCNIEKSRLISLSENDSFDP-AFWTGEIISKGSVFKHVGGPVGVYVTHR 166
           I+  F  ASG   N+ KS LI + E D+ +  A   G  I    V K++G P+G      
Sbjct: 662 ILAWFEAASGLRINLAKSELIPVGEIDNVEEMAVELGCRIGSFPV-KYLGLPLGARHKAL 720

Query: 165 QRFQWVLEKIILKMRRWEFVLLPLQSQIRVINAFMIPYISFLSPVLKMAK 16
             +  V E++  ++ RW+   L    +I +I + ++    +   + +M K
Sbjct: 721 PMWDGVEERMRRRLARWKRQYLSKGGRITLIKSTLVSIPIYQMSIFRMPK 770