BP919194
Clone id YMU001_000122_C11
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTCATGTGGCTCAAGCACACACTCGGAACGCTCATCCAATGATAAATTGTAAGCTCATC
AAGTGCACACCAAAAGAATGATCACATTGTAGGTTTGATTTTAAGAGCAAAAAGTAGTAA
GGATGTACAAAAGATCACCTGAAATAGAGCTCCTTTCAAGACAGGAGACTTTAATGTGTA
GAAGCTTTGAGTTTGATTAGTCAAGAATACGGCCTGGTGCTGCGTATGCTTTAGGCACAT
ACTCTTCGAGTCTTCTGTCTACCTCTACTGTTGTCCCTGCTTCTGCGCTGTCTTTTCTGC
CGAGGTGGTCGTCTTGAGATTTTTTTCCTTGCAAGCCGCTGTTTCCGTACCTCTGGGTCT
CCCCAGCCTCGTCCCCACTCTTGTGCCCTGCTGAGCCTGGACGGCTCCAGCAGGGCCTGG
ATCATGTCTCCTTCTGGATGGACCCAAAAACTCACCGAGCCTTCTCTCCTTCGATCATCA
AGGAACTTCTGACCATCAGCCGTGACTTCTGGGTTTCTGAGGTGTGGCACAATCAGCTTT
■■Homology search results ■■ -
sp_hit_id Q8BL06
Definition sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus
Align length 109
Score (bit) 33.1
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919194|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_C11.
(540 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydro... 33 0.89
sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens... 33 1.2
sp|O08784|TCOF_MOUSE Treacle protein OS=Mus musculus GN=Tcof1 PE... 32 2.6
sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan t... 30 7.6
sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macac... 30 7.6
sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo ... 30 7.6
sp|Q06725|NR2F1_DANRE Nuclear receptor subfamily 2 group F membe... 30 9.8
sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella ... 30 9.8
sp|Q5R7M2|SERA_PONAB D-3-phosphoglycerate dehydrogenase OS=Pongo... 30 9.9

>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase
54 OS=Mus musculus GN=Usp54 PE=1 SV=2
Length = 1588

Score = 33.1 bits (74), Expect = 0.89
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Frame = -3

Query: 415 PCWSRPGS---AGHKSGDEAGETQRYGNSGL------QGKKSQDDHLGRKD---SAEAGT 272
PCW P + SG GET R L QGK Q + K+ S GT
Sbjct: 1146 PCWEDPAAHPPLSMGSGLPDGETSRTAQPRLAEPDMYQGKLPQVTDIRSKELGSSVNLGT 1205

Query: 271 TVEVD------RRLEEYVPKAYAAPGRILD*SNSKLLHIKVSCLERSSI 143
++ +D R + V + PG D S+S H + +CLERS I
Sbjct: 1206 SLPLDSWVNVTRLCDSQVKPSAPGPG---DKSSSHDSHPRATCLERSPI 1251


>sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens
GN=TMEM132A PE=2 SV=1
Length = 1023

Score = 32.7 bits (73), Expect = 1.2
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = -3

Query: 421 SRPCWSRPGSAGHKSGDEAGETQRYGNSGLQGKKSQDDHLGRKDSAEAGTTVEVDRRLEE 242
S P WS P + G GN+G++GK + + RK+ EA E + EE
Sbjct: 778 SSPAWSPPATEATMGGKRQVAGSVGGNTGVRGKFERAEEEARKEETEA--REEEEEEEEE 835

Query: 241 YVP 233
VP
Sbjct: 836 MVP 838


>sp|O08784|TCOF_MOUSE Treacle protein OS=Mus musculus GN=Tcof1 PE=1
SV=1
Length = 1320

Score = 31.6 bits (70), Expect = 2.6
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1

Query: 420 PGPAGAVQAQQGTRVGTRL--GRPRGTETAACKEKNLKTTTSAEKTAQKQGQQ 268
PGP GA + G +G +L G ++ + K+K+LK EK +K+G++
Sbjct: 1243 PGPQGAKEKPDGELLGIKLESGEQSDPKSKSKKKKSLKKKKDKEKKEKKKGKK 1295


>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan
troglodytes GN=PHGDH PE=2 SV=1
Length = 533

Score = 30.0 bits (66), Expect = 7.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1

Query: 358 SPQPRPHSCALLSLDGSSRAWIMSPSGWTQKLTEPSLLRSSRNF*PSAVTSGFLR 522
SP +P +L RAW SP G Q +T+ + L+++ N AV G L+
Sbjct: 326 SPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLK 380


>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca
fascicularis GN=PHGDH PE=2 SV=4
Length = 533

Score = 30.0 bits (66), Expect = 7.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1

Query: 358 SPQPRPHSCALLSLDGSSRAWIMSPSGWTQKLTEPSLLRSSRNF*PSAVTSGFLR 522
SP +P +L RAW SP G Q +T+ + L+++ N AV G L+
Sbjct: 326 SPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLK 380


>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo
sapiens GN=PHGDH PE=1 SV=4
Length = 533

Score = 30.0 bits (66), Expect = 7.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1

Query: 358 SPQPRPHSCALLSLDGSSRAWIMSPSGWTQKLTEPSLLRSSRNF*PSAVTSGFLR 522
SP +P +L RAW SP G Q +T+ + L+++ N AV G L+
Sbjct: 326 SPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLK 380


>sp|Q06725|NR2F1_DANRE Nuclear receptor subfamily 2 group F member 1
OS=Danio rerio GN=nr2f1 PE=2 SV=1
Length = 411

Score = 29.6 bits (65), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3

Query: 406 SRPGSAGHKSGDEAGETQRYGNSGLQGKKSQDDHLGR 296
S PG+AG K +G++Q++ + G KS H G+
Sbjct: 54 STPGTAGDKGSQNSGQSQQHIECVVCGDKSSGKHYGQ 90


>sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella
zeae GN=INO80 PE=3 SV=1
Length = 1904

Score = 29.6 bits (65), Expect = 9.8
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3

Query: 397 GSAGHKSGDEAGETQRYGNSGLQGKKSQDDHLGRKDSAEA 278
G AG SG G+ G SG + KKS++ KDSAEA
Sbjct: 688 GEAGTPSGKRKGK----GRSGPRLKKSKEQKQAEKDSAEA 723


>sp|Q5R7M2|SERA_PONAB D-3-phosphoglycerate dehydrogenase OS=Pongo
abelii GN=PHGDH PE=2 SV=3
Length = 533

Score = 29.6 bits (65), Expect = 9.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1

Query: 358 SPQPRPHSCALLSLDGSSRAWIMSPSGWTQKLTEPSLLRSSRNF*PSAVTSGFLR 522
SP +P +L RAW SP G Q +T+ + L+++ N AV G L+
Sbjct: 326 SPHTKPWIGLAEALGTLMRAWAGSPKGAIQVITQGTSLKNAGNCLSPAVIVGLLK 380


tr_hit_id A7PS27
Definition tr|A7PS27|A7PS27_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera
Align length 63
Score (bit) 52.4
E-value 2.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919194|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_C11.
(540 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PS27|A7PS27_VITVI Chromosome chr14 scaffold_27, whole genom... 52 2e-05
tr|A9T1T4|A9T1T4_PHYPA Predicted protein (Fragment) OS=Physcomit... 52 3e-05
tr|Q5WN04|Q5WN04_ORYSJ Putative DNA helicase OS=Oryza sativa sub... 50 6e-05
tr|Q0DKP2|Q0DKP2_ORYSJ Os05g0150600 protein OS=Oryza sativa subs... 50 6e-05
tr|B8AY50|B8AY50_ORYSI Putative uncharacterized protein OS=Oryza... 50 6e-05
tr|A3B014|A3B014_ORYSJ Putative uncharacterized protein OS=Oryza... 50 6e-05
tr|Q9FT69|Q9FT69_ARATH DNA Helicase (Putative uncharacterized pr... 50 8e-05
tr|A7SQ81|A7SQ81_NEMVE Predicted protein OS=Nematostella vectens... 36 1.5
tr|Q4CVR4|Q4CVR4_TRYCR Nucleosome assembly protein-like protein,... 34 4.3
tr|B4PU13|B4PU13_DROYA GE10089 OS=Drosophila yakuba GN=GE10089 P... 34 4.4
tr|B3K261|B3K261_9DELT ATP-dependent metalloprotease FtsH OS=Geo... 34 5.6
tr|B6PTE4|B6PTE4_BRAFL Putative uncharacterized protein OS=Branc... 34 5.6
tr|Q4P4G6|Q4P4G6_USTMA Putative uncharacterized protein OS=Ustil... 34 5.6
tr|A6G5Y2|A6G5Y2_9DELT Putative uncharacterized protein OS=Plesi... 33 7.3
tr|Q093G7|Q093G7_STIAU Putative uncharacterized protein OS=Stigm... 33 7.4
tr|B5EHB1|B5EHB1_GEOBB ATP-dependent metalloprotease FtsH OS=Geo... 33 9.5

>tr|A7PS27|A7PS27_VITVI Chromosome chr14 scaffold_27, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022732001
PE=4 SV=1
Length = 745

Score = 52.4 bits (124), Expect = 2e-05
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = -2

Query: 521 LRNPEVTADGQKFLDDRRREGSVSFWVHPEGDMIQALLEPSRLSRAQEWGRGWGDPEVRK 342
++ P+ T G +FL + +F V+P+ DM+ + P S EWG+GW DPE+R+
Sbjct: 649 IKFPKPTKLGLEFLQSTTEQ---TFDVYPQADMLLSTRNPKSYSTFSEWGKGWADPEIRR 705

Query: 341 QRL 333
QRL
Sbjct: 706 QRL 708


>tr|A9T1T4|A9T1T4_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_10706 PE=4 SV=1
Length = 711

Score = 51.6 bits (122), Expect = 3e-05
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Frame = -2

Query: 539 KLIVPHLRNPEVTADGQKFLDDRR----REGSVSFWVHPEGDMIQALLEPSR---LSRAQ 381
KL+VP ++ P +T G + L + V+ EGDMIQA P ++
Sbjct: 611 KLVVPTIKYPLLTPKGLELLRTPNITIASQHVHRLLVYLEGDMIQASKMPRNHRTSEESR 670

Query: 380 EWGRGWGDPEVRKQRLA 330
EWGRGW DPE+R+QRL+
Sbjct: 671 EWGRGWADPEIRRQRLS 687


>tr|Q5WN04|Q5WN04_ORYSJ Putative DNA helicase OS=Oryza sativa subsp.
japonica GN=P0001A07.5 PE=4 SV=1
Length = 844

Score = 50.4 bits (119), Expect = 6e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = -2

Query: 521 LRNPEVTADGQKFLDDRRREGSVSFWVHPEGDMIQALLEPSRLSRAQEWGRGWGDPEVRK 342
++ PEVT G FL + E + +++ M+ + +P +S + EWGRGW DP +R+
Sbjct: 747 IQYPEVTEAGLNFLSMQSEEEGLYEYLNAA--MLLVMNDPKPISTSSEWGRGWADPAIRR 804

Query: 341 QRLA 330
QRLA
Sbjct: 805 QRLA 808


>tr|Q0DKP2|Q0DKP2_ORYSJ Os05g0150600 protein OS=Oryza sativa subsp.
japonica GN=Os05g0150600 PE=4 SV=1
Length = 872

Score = 50.4 bits (119), Expect = 6e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = -2

Query: 521 LRNPEVTADGQKFLDDRRREGSVSFWVHPEGDMIQALLEPSRLSRAQEWGRGWGDPEVRK 342
++ PEVT G FL + E + +++ M+ + +P +S + EWGRGW DP +R+
Sbjct: 775 IQYPEVTEAGLNFLSMQSEEEGLYEYLNAA--MLLVMNDPKPISTSSEWGRGWADPAIRR 832

Query: 341 QRLA 330
QRLA
Sbjct: 833 QRLA 836


>tr|B8AY50|B8AY50_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_18479 PE=4 SV=1
Length = 826

Score = 50.4 bits (119), Expect = 6e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = -2

Query: 521 LRNPEVTADGQKFLDDRRREGSVSFWVHPEGDMIQALLEPSRLSRAQEWGRGWGDPEVRK 342
++ PEVT G FL + E + +++ M+ + +P +S + EWGRGW DP +R+
Sbjct: 729 IQYPEVTEAGLNFLSMQSEEEGLYEYLNAA--MLLVMNDPKPISTSSEWGRGWADPAIRR 786

Query: 341 QRLA 330
QRLA
Sbjct: 787 QRLA 790


>tr|A3B014|A3B014_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_016386 PE=4 SV=1
Length = 848

Score = 50.4 bits (119), Expect = 6e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = -2

Query: 521 LRNPEVTADGQKFLDDRRREGSVSFWVHPEGDMIQALLEPSRLSRAQEWGRGWGDPEVRK 342
++ PEVT G FL + E + +++ M+ + +P +S + EWGRGW DP +R+
Sbjct: 751 IQYPEVTEAGLNFLSMQSEEEGLYEYLNAA--MLLVMNDPKPISTSSEWGRGWADPAIRR 808

Query: 341 QRLA 330
QRLA
Sbjct: 809 QRLA 812


>tr|Q9FT69|Q9FT69_ARATH DNA Helicase (Putative uncharacterized
protein At5g27680) (Fragment) OS=Arabidopsis thaliana
GN=recQsim PE=2 SV=1
Length = 858

Score = 50.1 bits (118), Expect = 8e-05
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = -2

Query: 503 TADGQKFLDDRRREGSVSFWVHPEGDMIQALLEPSRLSRAQEWGRGWGDPEVRKQRL 333
T G+K LD + +V+PE DM+ +L + S EWG+GW DPE+R+QRL
Sbjct: 772 TEKGKKQLDF---QDDKPLYVYPEADMLLSLKQDRTYSGFSEWGKGWADPEIRRQRL 825


>tr|A7SQ81|A7SQ81_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g246718 PE=4 SV=1
Length = 1811

Score = 35.8 bits (81), Expect = 1.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1

Query: 352 SGSPQPRPHSCALLSLDG--SSRAWIMSPSGWTQKLTEPSLLRSSRNF*PSAVTSGFLR 522
+GSP RP S +S+DG +S + SPS T+ L +P+ LR + VTS F++
Sbjct: 542 NGSPTERPSSDKKVSIDGFSTSHTSLKSPSPVTEVLMDPTGLRETTGITTPTVTSTFVK 600


>tr|Q4CVR4|Q4CVR4_TRYCR Nucleosome assembly protein-like protein,
putative OS=Trypanosoma cruzi GN=Tc00.1047053505983.20
PE=3 SV=1
Length = 455

Score = 34.3 bits (77), Expect = 4.3
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = -3

Query: 415 PCWSRPGSAGHKSGDEAGETQRY-GNSGLQGKKSQDDHLGRKDSAEAGTTVEVDRRL-EE 242
PC D+ G+ ++ G++G +G K DD ++ AEA +EV + L EE
Sbjct: 305 PCRDEDDDEDDDHDDDNGKDGKHSGDAGKKGDKEDDDDDDDEEEAEAELHIEVGQLLMEE 364

Query: 241 YVPK-AYAAPGRILD*SNSKLLHIKV 167
VPK A+ G+ +D ++ LH ++
Sbjct: 365 IVPKAAFFYTGKSVD-QTAQALHNQI 389


>tr|B4PU13|B4PU13_DROYA GE10089 OS=Drosophila yakuba GN=GE10089 PE=4
SV=1
Length = 1259

Score = 34.3 bits (77), Expect = 4.4
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = -1

Query: 474 SKERRLGEFLGPSRRRHDPGPAGAVQAQQGTRVGTRLGRPRGTETAACKEKNLKTTTSAE 295
S+ R E SRR H P P + G+ V T +GRPR ++ A + NL +T++
Sbjct: 488 SRHRTYAEQESTSRRHHMPFPPSSTPTSNGSCVITYVGRPRESQPAV--DLNLPSTSTGR 545

Query: 294 K 292
+
Sbjct: 546 R 546