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NBDC - LSDB Archive
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BP919201
Clone id YMU001_000122_D06
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCTATCATACAATATTCCCTCGTCAAAAATATTTAGTGTTTGAAGACACGAAAGCACT
TTGGGTGAAGTCGTGCCAATTTGTGTCCTTACAACCATGTCTTCAAACCGCCTTTCTTTC
CATTGATGCCTGCAACTAATTCTGTAATTCTACAAAATCCTGCTATGCTATGTTTCAACA
GATTGGGAGCTGGCTTTACTTTGATGGAGTTGCTGGGGATGTCAGTTTAAATTTATGCTA
TGTTAGGGATGTCCAAAACTAAAGCTGGATTAAAAGTGGAGATATGCAGCTCCATCAAAT
CGAGCTCCAGTAACTGTTGGATGTTGTCTATACAACTATTTAGAACCGACTGCTTTCGAC
CGACTGCTGCATGGAATCTGGAGCTCTGTAGCCCCATGGGTTTTCCCTAGCCCAGTTCCA
CTGATCACGACACATCTCATCTATGCCATAGCGAGCCCTCCAATGGAGCTCCCTTTCAAC
CTTCTCTGTAGAAGCATA
■■Homology search results ■■ -
sp_hit_id Q42605
Definition sp|Q42605|GALE1_ARATH UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana
Align length 38
Score (bit) 75.5
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919201|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_D06.
         (498 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q42605|GALE1_ARATH UDP-glucose 4-epimerase 1 OS=Arabidopsis t...    75   1e-13
sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48 OS=Cyamopsi...    75   2e-13
sp|Q43070|GALE1_PEA UDP-glucose 4-epimerase OS=Pisum sativum GN=...    74   3e-13
sp|O65780|GALE1_CYATE UDP-glucose 4-epimerase GEPI42 OS=Cyamopsi...    74   5e-13
sp|Q9T0A7|GALE3_ARATH UDP-glucose 4-epimerase 3 OS=Arabidopsis t...    69   9e-12
sp|Q9SN58|GALE2_ARATH UDP-glucose 4-epimerase 2 OS=Arabidopsis t...    69   2e-11
sp|P35673|GALE_ERWAM UDP-glucose 4-epimerase OS=Erwinia amylovor...    47   5e-05
sp|Q9W0P5|GALE_DROME Probable UDP-glucose 4-epimerase OS=Drosoph...    47   5e-05
sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtili...    47   6e-05
sp|Q8R059|GALE_MOUSE UDP-glucose 4-epimerase OS=Mus musculus GN=...    45   1e-04
sp|Q14376|GALE_HUMAN UDP-glucose 4-epimerase OS=Homo sapiens GN=...    45   1e-04
sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyce...    45   2e-04
sp|Q5R8D0|GALE_PONAB UDP-glucose 4-epimerase OS=Pongo abelii GN=...    45   2e-04
sp|P40801|GAL10_PACTA Bifunctional protein GAL10 OS=Pachysolen t...    45   2e-04
sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhi...    44   3e-04
sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi...    44   3e-04
sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli...    44   3e-04
sp|Q553X7|GALE_DICDI UDP-glucose 4-epimerase OS=Dictyostelium di...    44   3e-04
sp|P18645|GALE_RAT UDP-glucose 4-epimerase OS=Rattus norvegicus ...    44   4e-04
sp|Q9CNY5|GALE_PASMU UDP-glucose 4-epimerase OS=Pasteurella mult...    44   4e-04
sp|Q9HDU3|GAL10_SCHPO Bifunctional protein gal10 OS=Schizosaccha...    44   4e-04
sp|Q59678|GALE_PASHA UDP-glucose 4-epimerase OS=Pasteurella haem...    44   5e-04
sp|P24325|GALE_HAEIN UDP-glucose 4-epimerase OS=Haemophilus infl...    44   5e-04
sp|Q9F7D4|GALE_YERPE UDP-glucose 4-epimerase OS=Yersinia pestis ...    41   0.004
sp|P09609|GAL10_KLULA Bifunctional protein GAL10 OS=Kluyveromyce...    40   0.005
sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodur...    37   0.039
sp|Q57301|GALE_YEREN UDP-glucose 4-epimerase OS=Yersinia enteroc...    36   0.087
sp|Q9Y7X5|YGRE_SCHPO Uncharacterized protein C365.14c OS=Schizos...    35   0.15 
sp|Q9SUN3|ARAE3_ARATH Putative UDP-arabinose 4-epimerase 3 OS=Ar...    35   0.19 
sp|Q05026|GALE_NEIGO UDP-glucose 4-epimerase OS=Neisseria gonorr...    35   0.25 

>sp|Q42605|GALE1_ARATH UDP-glucose 4-epimerase 1 OS=Arabidopsis
           thaliana GN=At1g12780 PE=1 SV=2
          Length = 351

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYR 385
           YASTEK E+EL W+A+YG+DEMCRDQW WA  NPWGY+
Sbjct: 311 YASTEKAEKELGWKAKYGVDEMCRDQWKWANNNPWGYQ 348


>sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis
           tetragonoloba PE=2 SV=1
          Length = 350

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YAST K EREL+W+A+YGIDEMCRDQWNWA +NP+GY
Sbjct: 306 YASTNKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 342


>sp|Q43070|GALE1_PEA UDP-glucose 4-epimerase OS=Pisum sativum
           GN=GALE PE=2 SV=1
          Length = 350

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YAST K E+EL W+A+YG++EMCRDQWNWA+ NPWGY
Sbjct: 310 YASTAKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGY 346


>sp|O65780|GALE1_CYATE UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis
           tetragonoloba PE=2 SV=1
          Length = 354

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYR 385
           YASTEK E+EL W+A+YG++EMCRDQW WA  NPWGY+
Sbjct: 314 YASTEKAEKELGWKAKYGVEEMCRDQWKWASNNPWGYQ 351


>sp|Q9T0A7|GALE3_ARATH UDP-glucose 4-epimerase 3 OS=Arabidopsis
           thaliana GN=At4g23920 PE=2 SV=1
          Length = 350

 Score = 69.3 bits (168), Expect = 9e-12
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRAPDSMQQS 361
           YASTEK EREL+W+A+ GI+EMCRD WNWA  NP+GY +  +   S
Sbjct: 305 YASTEKAERELNWKAKNGIEEMCRDLWNWASNNPYGYNSSSNGSSS 350


>sp|Q9SN58|GALE2_ARATH UDP-glucose 4-epimerase 2 OS=Arabidopsis
           thaliana GN=At4g10960 PE=2 SV=3
          Length = 351

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YASTE+ E EL+W+A+YGI+EMCRD WNWA  NP+GY
Sbjct: 306 YASTERAESELNWKAKYGIEEMCRDLWNWASNNPYGY 342


>sp|P35673|GALE_ERWAM UDP-glucose 4-epimerase OS=Erwinia amylovora
           GN=galE PE=3 SV=1
          Length = 337

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWG 391
           +A     ++EL+WR   GIDEM RD WNW  +NP G
Sbjct: 300 WADATLADKELNWRVSRGIDEMMRDTWNWQSQNPQG 335


>sp|Q9W0P5|GALE_DROME Probable UDP-glucose 4-epimerase OS=Drosophila
           melanogaster GN=CG12030 PE=1 SV=1
          Length = 350

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YA     +++L W+A  GID+MC D W W  +NP GY
Sbjct: 311 YADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGY 347


>sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtilis
           GN=galE PE=3 SV=1
          Length = 339

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRAPD 376
           +A   K +REL W A+ G++EMC D W W   N  GY++ +
Sbjct: 299 FADPAKAKRELGWEAKRGLEEMCADSWRWQSSNVNGYKSAE 339


>sp|Q8R059|GALE_MOUSE UDP-glucose 4-epimerase OS=Mus musculus
           GN=Gale PE=2 SV=1
          Length = 347

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRA 382
           YA+      EL W A  G+D MC D W W ++NP G+ A
Sbjct: 307 YANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGFGA 345
tr_hit_id B8LKM2
Definition tr|B8LKM2|B8LKM2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 40
Score (bit) 80.1
E-value 5.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919201|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_D06.
         (498 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LKM2|B8LKM2_PICSI Putative uncharacterized protein OS=Picea...    80   5e-14
tr|B7FIW1|B7FIW1_MEDTR Putative uncharacterized protein OS=Medic...    78   3e-13
tr|B6TQ45|B6TQ45_MAIZE UDP-glucose 4-epimerase GEPI48 OS=Zea may...    78   3e-13
tr|Q58IJ5|Q58IJ5_HORVU UDP-D-glucose epimerase 2 OS=Hordeum vulg...    77   4e-13
tr|A9PG00|A9PG00_POPTR Putative uncharacterized protein OS=Popul...    77   4e-13
tr|Q1XG32|Q1XG32_9POAL UDP-galactose epimerase OS=Paspalum vagin...    76   1e-12
tr|B6TA76|B6TA76_MAIZE UDP-glucose 4-epimerase OS=Zea mays PE=2 ...    76   1e-12
tr|B4FU63|B4FU63_MAIZE Putative uncharacterized protein OS=Zea m...    76   1e-12
tr|B4FG89|B4FG89_MAIZE Putative uncharacterized protein OS=Zea m...    76   1e-12
tr|Q9CAM5|Q9CAM5_ARATH Uridine diphosphate glucose epimerase, pu...    75   1e-12
tr|Q8LDN8|Q8LDN8_ARATH Uridine diphosphate glucose epimerase, pu...    75   1e-12
tr|A9SPG4|A9SPG4_PHYPA Predicted protein OS=Physcomitrella paten...    75   2e-12
tr|Q6XP48|Q6XP48_SOLTU UDP-Glc-4-epimerase OS=Solanum tuberosum ...    75   2e-12
tr|Q6K2E1|Q6K2E1_ORYSJ Os09g0323000 protein OS=Oryza sativa subs...    75   2e-12
tr|B8BEF8|B8BEF8_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|Q6XZA0|Q6XZA0_SOLTU UDP-glucose 4-epimerase OS=Solanum tubero...    74   3e-12
tr|B7FK31|B7FK31_MEDTR Putative uncharacterized protein OS=Medic...    74   3e-12
tr|B0M3E8|B0M3E8_PEA UDP-galactose 4-epimerase (Fragment) OS=Pis...    74   3e-12
tr|Q58IJ7|Q58IJ7_HORVU UDP-D-glucose epimerase 3 OS=Hordeum vulg...    74   5e-12
tr|Q8LNZ3|Q8LNZ3_ORYSJ Os05g0595100 protein OS=Oryza sativa subs...    72   1e-11
tr|A9TFR4|A9TFR4_PHYPA Predicted protein OS=Physcomitrella paten...    72   1e-11
tr|A2Y861|A2Y861_ORYSI Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|Q9SGX0|Q9SGX0_ARATH F1N19.2 OS=Arabidopsis thaliana PE=3 SV=1       72   1e-11
tr|Q9C7W7|Q9C7W7_ARATH UDP-galactose 4-epimerase, putative; 6572...    72   1e-11
tr|A7QU91|A7QU91_VITVI Chromosome chr2 scaffold_176, whole genom...    71   2e-11
tr|A5BGY1|A5BGY1_VITVI Putative uncharacterized protein (Chromos...    71   2e-11
tr|A6MD13|A6MD13_9ORYZ UDP glucose-4 epimerase OS=Oryza brachyan...    71   3e-11
tr|A7QKH3|A7QKH3_VITVI Chromosome chr2 scaffold_112, whole genom...    70   5e-11
tr|A4PCV9|A4PCV9_MALDO UDP-galactose OS=Malus domestica GN=UGE P...    70   5e-11
tr|Q8H0B7|Q8H0B7_ORYSJ Putative UDP-glucose 4-epimerase OS=Oryza...    70   7e-11

>tr|B8LKM2|B8LKM2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 356

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRAP 379
           YASTEK E EL W+A+YGI+EMCRDQWNWAR+NPWGY +P
Sbjct: 317 YASTEKAEHELGWKAKYGIEEMCRDQWNWARQNPWGYISP 356


>tr|B7FIW1|B7FIW1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 392

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRAPDS 373
           YAST+K EREL W+A+YGID MCRDQWNWA +NP+GY +PDS
Sbjct: 349 YASTKKAERELKWKAKYGIDGMCRDQWNWASKNPYGYGSPDS 390


>tr|B6TQ45|B6TQ45_MAIZE UDP-glucose 4-epimerase GEPI48 OS=Zea mays
           PE=2 SV=1
          Length = 423

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 29/46 (63%), Positives = 41/46 (89%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRAPDSMQQS 361
           ++ T K EREL+W+A+YGI+EMCRDQWNWA +NP+GY +PDS++Q+
Sbjct: 317 FSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDSIKQN 362


>tr|Q58IJ5|Q58IJ5_HORVU UDP-D-glucose epimerase 2 OS=Hordeum vulgare
           GN=UGE2 PE=2 SV=2
          Length = 374

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRAPDSMQQSVES 352
           +A T K EREL+W+A+YGI EMCRDQWNWA +NP+GY +PDS +Q+  S
Sbjct: 325 FAGTGKAERELNWKAKYGITEMCRDQWNWASKNPYGYGSPDSTKQNGNS 373


>tr|A9PG00|A9PG00_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 348

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYRAPD 376
           YA+TEK ER+L W+A YG+DEMCRDQWNWA +NP+GY +PD
Sbjct: 305 YAATEKAERDLSWKANYGVDEMCRDQWNWASKNPYGYGSPD 345


>tr|Q1XG32|Q1XG32_9POAL UDP-galactose epimerase OS=Paspalum
           vaginatum GN=PvUGE1 PE=2 SV=1
          Length = 364

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YASTEK EREL WRA+YGI+EMCRDQWNWA++NP+GY
Sbjct: 322 YASTEKAERELGWRAQYGIEEMCRDQWNWAKKNPYGY 358


>tr|B6TA76|B6TA76_MAIZE UDP-glucose 4-epimerase OS=Zea mays PE=2
           SV=1
          Length = 363

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YASTEK EREL WRA+YGI+EMCRDQWNWA++NP+GY
Sbjct: 321 YASTEKAERELAWRAQYGIEEMCRDQWNWAKKNPYGY 357


>tr|B4FU63|B4FU63_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 363

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YASTEK EREL WRA+YGI+EMCRDQWNWA++NP+GY
Sbjct: 321 YASTEKAERELAWRAQYGIEEMCRDQWNWAKKNPYGY 357


>tr|B4FG89|B4FG89_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 318

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGY 388
           YASTEK EREL WRA+YGI+EMCRDQWNWA++NP+GY
Sbjct: 276 YASTEKAERELAWRAQYGIEEMCRDQWNWAKKNPYGY 312


>tr|Q9CAM5|Q9CAM5_ARATH Uridine diphosphate glucose epimerase,
           putative; 80611-78786 OS=Arabidopsis thaliana
           GN=F16M19.8 PE=3 SV=1
          Length = 353

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 27/38 (71%), Positives = 35/38 (92%)
 Frame = -1

Query: 498 YASTEKVERELHWRARYGIDEMCRDQWNWARENPWGYR 385
           YAST+K E+EL W+A+YG+DEMCRDQWNWA +NPWG++
Sbjct: 313 YASTQKAEKELGWKAKYGVDEMCRDQWNWANKNPWGFQ 350