BP919211
Clone id YMU001_000122_E04
Library
Length 158
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGATTATGCCATGGGGTTCGCTTTAACAGGTGGCATGCCAGTTGCTTATGGTGCAAGTGC
TTCAAGAGATGGCATATAAAACGGCTTGAACATGCACGCTTTATAGTGTAGAAGGTTATG
GCCAATGTCATATATGTGGTCCAGTGGATGATGGCTAT
■■Homology search results ■■ -
sp_hit_id Q9SRR1
Definition sp|Q9SRR1|FBL12_ARATH F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana
Align length 27
Score (bit) 32.3
E-value 0.76
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919211|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_E04.
(158 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SRR1|FBL12_ARATH F-box/LRR-repeat protein 12 OS=Arabidopsis... 32 0.76
sp|O36635|L_HRSVB Large structural protein OS=Human respiratory ... 29 6.5
sp|O91940|L_BRSVA Large structural protein OS=Bovine respiratory... 29 8.4

>sp|Q9SRR1|FBL12_ARATH F-box/LRR-repeat protein 12 OS=Arabidopsis
thaliana GN=FBL12 PE=2 SV=1
Length = 395

Score = 32.3 bits (72), Expect = 0.76
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1

Query: 4 LCHGVRFNRWHASCLWCKCFKRWHIKR 84
LCH V+ + W A WC+ K+ H+ R
Sbjct: 304 LCHEVKISGWEAVGKWCRNLKKLHVNR 330


>sp|O36635|L_HRSVB Large structural protein OS=Human respiratory
syncytial virus B (strain B1) GN=L PE=3 SV=1
Length = 2166

Score = 29.3 bits (64), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1

Query: 52 CKCFKRWHIKRLEHARFIV*KVMANVIY 135
C FK W +KRL +A+F V + N+ Y
Sbjct: 1604 CHSFKLWFLKRLNNAKFTVCPWVVNIDY 1631


>sp|O91940|L_BRSVA Large structural protein OS=Bovine respiratory
syncytial virus (strain A51908) GN=L PE=3 SV=1
Length = 2162

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1

Query: 52 CKCFKRWHIKRLEHARFIV*KVMANVIY 135
C FK W +KRL ++FIV + N+ Y
Sbjct: 1601 CHSFKLWFLKRLNTSKFIVCPWVVNIDY 1628


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919211|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_E04.
(158 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******