BP919216
Clone id YMU001_000122_E09
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTTTTTAGAATAACAATTTATCCCACTTTTATTGATGCCATGTATG
CATAAAGTAACTCTTAAATACAAAATGGAAAGAAAACCTTCTAGAAAATCCTTGGGAAGT
TCCAACAAGACCATAAATGCAGACATAAGCCTTACATATTTACCCTATAAAATAGGCCAA
AACTTTAAATATTATGAAGGAAACAGCATTTGGAAGAAGCAAGGCTGTTTTTTGTTATCC
TCAAGAGGTTGCTAAAGATAACAATCTAGTTCTATTCTCACAAGGCAAAAGTTTCTCAAG
ACCTCATCACCAATGGCTTTTGGTAAGGCCTCACATGGAGGATCCCTAGAAAGAGAAAGA
CATTCTTTTCTCAGTTTTACAAGATCTT
■■Homology search results ■■ -
sp_hit_id P21301
Definition sp|P21301|NDUS2_TRYBB NADH-ubiquinone oxidoreductase 49 kDa subunit homolog OS=Trypanosoma brucei brucei
Align length 32
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919216|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_E09.
(368 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P21301|NDUS2_TRYBB NADH-ubiquinone oxidoreductase 49 kDa subu... 30 4.9
sp|Q6PF18|MORN3_HUMAN MORN repeat-containing protein 3 OS=Homo s... 29 8.3
sp|Q9P7X2|ELL1_SCHPO RNA polymerase II elongation factor ell1 OS... 29 8.3

>sp|P21301|NDUS2_TRYBB NADH-ubiquinone oxidoreductase 49 kDa subunit
homolog OS=Trypanosoma brucei brucei GN=NAD7 PE=2 SV=2
Length = 386

Score = 29.6 bits (65), Expect = 4.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3

Query: 132 RLMSAFMVLLELPKDFLEGFLSILYLRVTLCI 37
R+ AFMVLL + DF+ GF+ L L + C+
Sbjct: 152 RMHLAFMVLLGILDDFVFGFVDFLLLLIISCL 183


>sp|Q6PF18|MORN3_HUMAN MORN repeat-containing protein 3 OS=Homo
sapiens GN=MORN3 PE=2 SV=1
Length = 240

Score = 28.9 bits (63), Expect = 8.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2

Query: 68 ERKPSRKSLGSSNKTINADISLTYLPYKIGQ---NFKYYEGNSIWKKQG 205
+RK R L S +N D Y +G+ N K+ +G +WKK+G
Sbjct: 18 DRKAQRNGLRSQVYAVNGD-------YYVGEWEDNVKHGKGTQVWKKKG 59


>sp|Q9P7X2|ELL1_SCHPO RNA polymerase II elongation factor ell1
OS=Schizosaccharomyces pombe GN=ell1 PE=1 SV=1
Length = 533

Score = 28.9 bits (63), Expect = 8.3
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = -3

Query: 123 SAFMVLLELPKDFLEGFLS 67
S ++L++LPK+FLEG+LS
Sbjct: 22 SPLLMLVQLPKEFLEGYLS 40


tr_hit_id A0FIM2
Definition tr|A0FIM2|A0FIM2_STAAU Replication initiation protein OS=Staphylococcus aureus
Align length 40
Score (bit) 37.4
E-value 0.38
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919216|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_E09.
(368 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0FIM2|A0FIM2_STAAU Replication initiation protein OS=Staphyl... 37 0.38
tr|Q4ZE73|Q4ZE73_9VIRU ORF001 OS=Staphylococcus phage PT1028 PE=... 37 0.38
tr|Q99SM5|Q99SM5_STAAM Putative uncharacterized protein OS=Staph... 37 0.49
tr|Q7A4J9|Q7A4J9_STAAN Putative uncharacterized protein SA1828 O... 37 0.49
tr|Q6GJU0|Q6GJU0_STAAR Putative uncharacterized protein OS=Staph... 37 0.49
tr|Q2YVK5|Q2YVK5_STAAB Pathogenicity island protein (Orf13 and O... 37 0.49
tr|Q2YUA2|Q2YUA2_STAAB Hypothetical mobile element-associated pr... 37 0.49
tr|A7X4I1|A7X4I1_STAA1 Putative uncharacterized protein OS=Staph... 37 0.49
tr|Q9F0K4|Q9F0K4_STAAU Orf14 OS=Staphylococcus aureus PE=4 SV=1 37 0.49
tr|Q8IJK9|Q8IJK9_PLAF7 Putative uncharacterized protein OS=Plasm... 33 9.3

>tr|A0FIM2|A0FIM2_STAAU Replication initiation protein
OS=Staphylococcus aureus GN=rep PE=4 SV=1
Length = 569

Score = 37.4 bits (85), Expect = 0.38
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNIKLFSNDKGFQK 177


>tr|Q4ZE73|Q4ZE73_9VIRU ORF001 OS=Staphylococcus phage PT1028 PE=4
SV=1
Length = 569

Score = 37.4 bits (85), Expect = 0.38
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNIKLFSNDKGFQK 177


>tr|Q99SM5|Q99SM5_STAAM Putative uncharacterized protein
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2021 PE=4 SV=1
Length = 569

Score = 37.0 bits (84), Expect = 0.49
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQK 177


>tr|Q7A4J9|Q7A4J9_STAAN Putative uncharacterized protein SA1828
OS=Staphylococcus aureus (strain N315) GN=SA1828 PE=4
SV=1
Length = 569

Score = 37.0 bits (84), Expect = 0.49
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQK 177


>tr|Q6GJU0|Q6GJU0_STAAR Putative uncharacterized protein
OS=Staphylococcus aureus (strain MRSA252) GN=SAR0375
PE=4 SV=1
Length = 569

Score = 37.0 bits (84), Expect = 0.49
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQK 177


>tr|Q2YVK5|Q2YVK5_STAAB Pathogenicity island protein (Orf13 and
Orf14) OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=SAB0351 PE=4 SV=1
Length = 569

Score = 37.0 bits (84), Expect = 0.49
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQK 177


>tr|Q2YUA2|Q2YUA2_STAAB Hypothetical mobile element-associated
protein OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=SAB1904c PE=4 SV=1
Length = 569

Score = 37.0 bits (84), Expect = 0.49
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQK 177


>tr|A7X4I1|A7X4I1_STAA1 Putative uncharacterized protein
OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=SAHV_2006 PE=4 SV=1
Length = 569

Score = 37.0 bits (84), Expect = 0.49
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQK 177


>tr|Q9F0K4|Q9F0K4_STAAU Orf14 OS=Staphylococcus aureus PE=4 SV=1
Length = 278

Score = 37.0 bits (84), Expect = 0.49
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3

Query: 165 LNIMKETAFGRSKAVFCYP-QEVAKDNNLVLFSQGKSFSR 281
LN+ T G K F YP QEV KD+N+ LFS K F +
Sbjct: 138 LNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQK 177


>tr|Q8IJK9|Q8IJK9_PLAF7 Putative uncharacterized protein OS=Plasmodium
falciparum (isolate 3D7) GN=PF10_0186 PE=4 SV=1
Length = 1740

Score = 32.7 bits (73), Expect = 9.3
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +2

Query: 56 KYKMERKPSRKSLGSSNKTI--NADISLTYLP-----YKIGQNF-KYYEGNSIWKKQ 202
KY E K + K LG K I N D + Y+ Y N ++Y+ N++WKKQ
Sbjct: 1433 KYFNEEKDNYKILGQEEKNISTNEDNEIVYIDTYNNNYNNNNNMNRFYDNNTLWKKQ 1489