BP919230
Clone id YMU001_000122_F11
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAGCCCAATGGCATGTAGATTTGAAGAGCAGAAAGATAGGGCACATAGTACTGCACTGTA
GTCTCCCCGCCCGGTAATTTCAAAGGCACCCCTGCCCCATATGCACTCCATTCATCAAAC
GAATGCCACAGATCGCCCAAGCTGAAAAAAGGAATGCTCTCTCCATGCGATTTCCACTGC
TCTCCTACAGTCTCTGAAATCCCACTCTTGGGTTGGTACTGGCATATCACTGATGGGGTG
GTGTATTCCAAAATGCAATCCAAGTTTGACCCACCTGGCCTTGAGCCATTTATTATGCAA
GTGGGTATGAGCACATGTTTGCACATCATGGTGTCTGTGGAAATTGCTTCCCTATGCTTG
TACTCATTCTCCCTCTGCCCTCTTGTCAGCTGCCTCATAGAGCAAGACATTTGCTTACAT
TTATCTATCATCCTCCTCCTTAGTTAATCAAAACCTCTTTTGCAGGAAATCTTTTCTTAC
ATGAAAGCGAAACCTTTTCTTACTTGAAAGCGAAACCTTGACCTGTATATGTGTGTATGT
GTGAATGTGAGCTCACTTTCTCTCGCGAGCGCACTGTCTCTC
■■Homology search results ■■ -
sp_hit_id P14230
Definition sp|P14230|MTSM_SERMA Modification methylase SmaI OS=Serratia marcescens
Align length 44
Score (bit) 33.5
E-value 0.76
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919230|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_F11.
(569 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P14230|MTSM_SERMA Modification methylase SmaI OS=Serratia mar... 33 0.76
sp|Q0ZUL9|TLR6_DASNO Toll-like receptor 6 OS=Dasypus novemcinctu... 31 4.9
sp|A3EX97|NS3C_BCHK4 Non-structural protein 3c OS=Bat coronaviru... 30 6.4
sp|P40223|CSF3R_MOUSE Granulocyte colony-stimulating factor rece... 30 6.4
sp|Q7VLG6|BIOD1_HAEDU Dethiobiotin synthetase 1 OS=Haemophilus d... 30 8.4

>sp|P14230|MTSM_SERMA Modification methylase SmaI OS=Serratia
marcescens GN=smaIM PE=3 SV=1
Length = 292

Score = 33.5 bits (75), Expect = 0.76
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2

Query: 286 CIINGSRPGGSNLDCILEYTTPSVICQYQPKSGISETVGEQWKS 155
C++ GSRPGG LD T V+CQ + + + E++ S
Sbjct: 239 CVLAGSRPGGKVLDPFFGSGTTGVVCQELDRECVGIELNEEYAS 282


>sp|Q0ZUL9|TLR6_DASNO Toll-like receptor 6 OS=Dasypus novemcinctus
GN=TLR6 PE=2 SV=1
Length = 789

Score = 30.8 bits (68), Expect = 4.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2

Query: 293 YEHMFAHHGVCGNCFPMLVLIL--PLPSCQLPHRARHLLTFI 412
YE FAHH + F L+LIL P+P +P+ L + I
Sbjct: 713 YELYFAHHNLFHEAFDNLILILLEPIPQYSIPNNYHKLKSLI 754


>sp|A3EX97|NS3C_BCHK4 Non-structural protein 3c OS=Bat coronavirus
HKU4 GN=3c PE=4 SV=1
Length = 285

Score = 30.4 bits (67), Expect = 6.4
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Frame = +3

Query: 45 VVSPPGNFKGTPAPYALHSSNECHRSPKLK--KGMLSPCDFHCSPTVSEIPL-------- 194
V+ P + K P SS + HR PKL+ K SP + + V + P
Sbjct: 42 VLPPTSSDKTVMMPAKATSSRKRHRKPKLQYAKRRFSPVNPNDLVLVQQEPTHCVRLVFP 101

Query: 195 LGWYWHITDGVVYSKMQSKFDPPGLEPFIMQVGMSTCLHI---MVSVEIASLCLYSF-SL 362
L W DG+VYS + + V M+ H+ ++ A C +F L
Sbjct: 102 LSKRWIHFDGLVYSLAR------------LNVSMTVDYHVTLALIYAPEAGECFGNFLHL 149

Query: 363 CPLV-SCLIE 389
CPL+ CL+E
Sbjct: 150 CPLLKDCLLE 159


>sp|P40223|CSF3R_MOUSE Granulocyte colony-stimulating factor
receptor OS=Mus musculus GN=Csf3r PE=1 SV=1
Length = 837

Score = 30.4 bits (67), Expect = 6.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2

Query: 256 SNLDCILEYTTPSVICQYQP 197
SNL C++ TT S++CQ++P
Sbjct: 128 SNLSCLMHLTTNSLVCQWEP 147


>sp|Q7VLG6|BIOD1_HAEDU Dethiobiotin synthetase 1 OS=Haemophilus
ducreyi GN=bioD1 PE=3 SV=1
Length = 278

Score = 30.0 bits (66), Expect = 8.4
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1

Query: 133 KKECSLHAISTALLQSLKSHSWVGTGISLMGWCIPKCNPSLTHLA-LSHLLCK 288
K+ C HA+ TA Q+++ G++L+GW + NP L H A L LL K
Sbjct: 196 KEGCVNHALLTA--QAIQQQ-----GVNLIGWVANRINPCLRHYAELIELLSK 241


tr_hit_id A7Q8K6
Definition tr|A7Q8K6|A7Q8K6_VITVI Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera
Align length 125
Score (bit) 104.0
E-value 3.0e-21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919230|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_F11.
(569 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7Q8K6|A7Q8K6_VITVI Chromosome chr5 scaffold_64, whole genome... 104 3e-21
tr|A9RPR0|A9RPR0_PHYPA Predicted protein OS=Physcomitrella paten... 100 1e-19
tr|A9TPL8|A9TPL8_PHYPA Predicted protein OS=Physcomitrella paten... 97 6e-19
tr|A9RZ13|A9RZ13_PHYPA Predicted protein OS=Physcomitrella paten... 97 8e-19
tr|A9RSK0|A9RSK0_PHYPA Predicted protein OS=Physcomitrella paten... 95 2e-18
tr|A7PXD4|A7PXD4_VITVI Chromosome chr12 scaffold_36, whole genom... 94 4e-18
tr|B4FEX2|B4FEX2_MAIZE Putative uncharacterized protein OS=Zea m... 94 5e-18
tr|Q6YSZ2|Q6YSZ2_ORYSJ Os07g0246600 protein OS=Oryza sativa subs... 91 6e-17
tr|A7Q9Q2|A7Q9Q2_VITVI Chromosome chr5 scaffold_67, whole genome... 90 8e-17
tr|Q9M0J2|Q9M0J2_ARATH Putative uncharacterized protein AT4g2815... 90 1e-16
tr|Q8L9D1|Q8L9D1_ARATH Putative uncharacterized protein OS=Arabi... 90 1e-16
tr|Q8GUN3|Q8GUN3_ARATH Putative uncharacterized protein At4g2815... 90 1e-16
tr|A9P9W8|A9P9W8_POPTR Putative uncharacterized protein OS=Popul... 89 1e-16
tr|Q9ZT70|Q9ZT70_ARATH Putative uncharacterized protein AT4g0342... 89 2e-16
tr|Q8S9K9|Q8S9K9_ARATH AT4g03420/F9H3_4 OS=Arabidopsis thaliana ... 89 2e-16
tr|Q850Z6|Q850Z6_ORYSJ Putative uncharacterized protein OSJNBb00... 89 2e-16
tr|Q7Y149|Q7Y149_ORYSJ Putative uncharacterized protein OSJNBa00... 89 2e-16
tr|Q10B37|Q10B37_ORYSJ Os03g0831300 protein OS=Oryza sativa subs... 89 2e-16
tr|B8AMR1|B8AMR1_ORYSI Putative uncharacterized protein OS=Oryza... 89 2e-16
tr|B4FY71|B4FY71_MAIZE Putative uncharacterized protein OS=Zea m... 88 3e-16
tr|B4FYP0|B4FYP0_MAIZE Putative uncharacterized protein OS=Zea m... 88 4e-16
tr|A7PGX7|A7PGX7_VITVI Chromosome chr17 scaffold_16, whole genom... 88 4e-16
tr|Q940I8|Q940I8_ARATH Putative uncharacterized protein Z97340.1... 86 1e-15
tr|Q8LNT2|Q8LNT2_ORYSJ Os10g0494000 protein OS=Oryza sativa subs... 86 1e-15
tr|A2Z8W3|A2Z8W3_ORYSI Putative uncharacterized protein OS=Oryza... 86 1e-15
tr|Q3E9V1|Q3E9V1_ARATH Uncharacterized protein At4g28150.2 (Puta... 85 2e-15
tr|A7P3D3|A7P3D3_VITVI Chromosome chr1 scaffold_5, whole genome ... 85 2e-15
tr|Q9LR63|Q9LR63_ARATH F21B7.22 OS=Arabidopsis thaliana PE=4 SV=1 84 4e-15
tr|Q8RY13|Q8RY13_ARATH At1g03610/F21B7_13 OS=Arabidopsis thalian... 84 4e-15
tr|Q8LF98|Q8LF98_ARATH Putative uncharacterized protein OS=Arabi... 84 4e-15

>tr|A7Q8K6|A7Q8K6_VITVI Chromosome chr5 scaffold_64, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00033091001
PE=4 SV=1
Length = 357

Score = 104 bits (260), Expect = 3e-21
Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Frame = -2

Query: 370 RGQRENEYKHREAISTDTMMCKHVLIPTCIINGSRPGGS-NLDCILEYTTPSVICQYQPK 194
R Q + KH+ A ++ TC ++ G S NLD LEYTTP V Q+ PK
Sbjct: 4 RQQVQKPLKHKAAAEPESRTELDDCSSTCSVSHQGLGDSTNLDRFLEYTTPVVPAQHFPK 63

Query: 193 SGISETVGEQWKSHG-ESIPFFSLGDLWHSFDEWSAYGAGVPLKLPGGETTVQYYVPYLS 17
+ + W++H E P+F LGDLW SF EWSAYGAGVPL L G E+ VQYYVPYLS
Sbjct: 64 TSM-----RGWRNHQTEFHPYFILGDLWESFKEWSAYGAGVPLLLNGSESVVQYYVPYLS 118

Query: 16 ALQIY 2
+Q+Y
Sbjct: 119 GIQLY 123


>tr|A9RPR0|A9RPR0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_117738 PE=4 SV=1
Length = 400

Score = 99.8 bits (247), Expect = 1e-19
Identities = 52/85 (61%), Positives = 60/85 (70%)
Frame = -2

Query: 256 SNLDCILEYTTPSVICQYQPKSGISETVGEQWKSHGESIPFFSLGDLWHSFDEWSAYGAG 77
SNLD LE TTP V PKS + + +W + E P+F+LGDLW SFDEWSAYGAG
Sbjct: 96 SNLDRFLEETTPCVKVLTLPKSRLRDP-SNRW-FNPEETPYFNLGDLWDSFDEWSAYGAG 153

Query: 76 VPLKLPGGETTVQYYVPYLSALQIY 2
VPL L G E+ VQYYVPYLSALQ+Y
Sbjct: 154 VPLTLNGDESVVQYYVPYLSALQLY 178


>tr|A9TPL8|A9TPL8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_148691 PE=4 SV=1
Length = 337

Score = 97.1 bits (240), Expect = 6e-19
Identities = 52/96 (54%), Positives = 61/96 (63%)
Frame = -2

Query: 289 TCIINGSRPGGSNLDCILEYTTPSVICQYQPKSGISETVGEQWKSHGESIPFFSLGDLWH 110
T +G SNLD LE T+P V Q PK IS + + + E P+F+L DLW
Sbjct: 23 TACSSGQSSSQSNLDRFLEETSPRVKTQTLPKVVISRAMR---RCNPEVTPYFNLRDLWD 79

Query: 109 SFDEWSAYGAGVPLKLPGGETTVQYYVPYLSALQIY 2
SFDEWSAYG GVPL L G E+ VQYYVPYLSALQ+Y
Sbjct: 80 SFDEWSAYGCGVPLMLNGDESAVQYYVPYLSALQLY 115


>tr|A9RZ13|A9RZ13_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_72334 PE=4 SV=1
Length = 276

Score = 96.7 bits (239), Expect = 8e-19
Identities = 51/85 (60%), Positives = 57/85 (67%)
Frame = -2

Query: 256 SNLDCILEYTTPSVICQYQPKSGISETVGEQWKSHGESIPFFSLGDLWHSFDEWSAYGAG 77
SNLD LE TTP V QY PK ++ E +F+LGDLW SFDEWSAYGAG
Sbjct: 17 SNLDRFLEVTTPRVRTQYLPKRC----------ANPEETLYFNLGDLWDSFDEWSAYGAG 66

Query: 76 VPLKLPGGETTVQYYVPYLSALQIY 2
VPL L G E+ VQYYVPYLSALQ+Y
Sbjct: 67 VPLVLNGDESVVQYYVPYLSALQLY 91


>tr|A9RSK0|A9RSK0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_177744 PE=4 SV=1
Length = 341

Score = 95.1 bits (235), Expect = 2e-18
Identities = 49/85 (57%), Positives = 60/85 (70%)
Frame = -2

Query: 256 SNLDCILEYTTPSVICQYQPKSGISETVGEQWKSHGESIPFFSLGDLWHSFDEWSAYGAG 77
SN+D LE TTP V Q PKS + ++ ++ + E +F+L DLW SFDEWSAYGAG
Sbjct: 21 SNIDRFLEVTTPRVKTQNLPKSYVRDS-SQKRCLNPEKTAYFNLRDLWDSFDEWSAYGAG 79

Query: 76 VPLKLPGGETTVQYYVPYLSALQIY 2
VPL L G E+ VQYYVPYLSALQ+Y
Sbjct: 80 VPLVLNGDESVVQYYVPYLSALQLY 104


>tr|A7PXD4|A7PXD4_VITVI Chromosome chr12 scaffold_36, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025995001
PE=4 SV=1
Length = 304

Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Frame = -2

Query: 256 SNLDCILEYTTPSVICQYQPKSGISE--TVGEQWKSHGESIPFFSLGDLWHSFDEWSAYG 83
SNL+C LE TP V Q+ K+ I + + W+ E + +F+LGDLW+ FDEWSAYG
Sbjct: 10 SNLECFLECITPVVQSQFLHKTEIRDLNVLWHPWER--EKVEYFTLGDLWNCFDEWSAYG 67

Query: 82 AGVPLKLPGGETTVQYYVPYLSALQIY 2
AGVP+ L ET VQYYVPYLSA+QI+
Sbjct: 68 AGVPILLNNNETLVQYYVPYLSAIQIF 94


>tr|B4FEX2|B4FEX2_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 322

Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = -2

Query: 253 NLDCILEYTTPSVICQYQPKSGISETVGEQWKSHGESIPFFSLGDLWHSFDEWSAYGAGV 74
NLD L TTPSV Y PK+ + G + S P+F LGDLW +F EWS YGAGV
Sbjct: 119 NLDRFLSSTTPSVPVHYLPKTSMR---GWRMGDVTNSRPYFCLGDLWEAFKEWSFYGAGV 175

Query: 73 PLKLPGGETTVQYYVPYLSALQIY 2
PL L GGE+ +QYYVPYLSA+Q+Y
Sbjct: 176 PLVLSGGESVIQYYVPYLSAIQLY 199


>tr|Q6YSZ2|Q6YSZ2_ORYSJ Os07g0246600 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0003K21.26 PE=4 SV=1
Length = 455

Score = 90.5 bits (223), Expect = 6e-17
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Frame = -2

Query: 253 NLDCILEYTTPSVICQYQPKSGISETVGEQWKSHG--ESIPFFSLGDLWHSFDEWSAYGA 80
NL+ L TTPSV QY PK+ + W+S S P+F LGDLW +F+EWS YGA
Sbjct: 151 NLERFLSSTTPSVPVQYLPKTSM-----RGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGA 205

Query: 79 GVPLKLPGGETTVQYYVPYLSALQIY 2
GVP+ L G ++ +QYYVPYLSA+Q+Y
Sbjct: 206 GVPVVLNGKDSVIQYYVPYLSAIQLY 231


>tr|A7Q9Q2|A7Q9Q2_VITVI Chromosome chr5 scaffold_67, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00033573001
PE=4 SV=1
Length = 337

Score = 90.1 bits (222), Expect = 8e-17
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = -2

Query: 256 SNLDCILEYTTPSVICQYQPKSGISETVGEQWKSHGES-IPFFSLGDLWHSFDEWSAYGA 80
SNL+C L TP V Q + + + + +W+ G+ I +F+L DLW +DEWSAYG
Sbjct: 16 SNLECFLNGVTPIVPSQSLSQDCVQD-LNNRWRLPGQDKIDYFTLADLWDCYDEWSAYGI 74

Query: 79 GVPLKLPGGETTVQYYVPYLSALQIY 2
G+PLKL GGE +QYYVPYLSA+ IY
Sbjct: 75 GIPLKLDGGENIMQYYVPYLSAIHIY 100


>tr|Q9M0J2|Q9M0J2_ARATH Putative uncharacterized protein AT4g28150
OS=Arabidopsis thaliana GN=AT4g28150 PE=4 SV=1
Length = 258

Score = 89.7 bits (221), Expect = 1e-16
Identities = 45/85 (52%), Positives = 53/85 (62%)
Frame = -2

Query: 256 SNLDCILEYTTPSVICQYQPKSGISETVGEQWKSHGESIPFFSLGDLWHSFDEWSAYGAG 77
SNLD L TTP V PK+ I + +S+ +F LGD W FDEWSAYGAG
Sbjct: 25 SNLDRFLRCTTPIVPAYSLPKTQIKNLNPLWYPLESQSVEYFRLGDFWDCFDEWSAYGAG 84

Query: 76 VPLKLPGGETTVQYYVPYLSALQIY 2
VP+ GET VQYYVPYLSA+QI+
Sbjct: 85 VPIVSETGETLVQYYVPYLSAIQIF 109