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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919231
Clone id YMU001_000122_F12
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACGGCACACTTTGAACAAGAGCTCCCACAATAATTCCACATCCATGCCCCCTTCCGGT
AATCGAACTCGGGTCCTTCTGACCACAATTACACTACTTGACCCATAATTAGGCAGCCGA
TTACACTAATTACCCCTACCGTAATCAGGATATGGAAATCCTCTCTATAATCTTCGTTTG
CACCTCAATAATCCTCAGCTCAGAGATTGCCAATTCCTGCAGCCTCAAATTGCATGCCTG
CATCCATCCAAAGCTCTCTTAGCCCGCACTCTTTCATCATCCTCTCCCATTGCCTCGCAT
ACGCAGGAAGCCATTTCTTGAGCGTCGGCCCCGGGCCATGAACCACAAAGTCTCCTGGTT
GAAACAAGTACCCTTCTCCCGCAGGGTATCCATAAGCATTAAAATCCCTTATCGGAGAAA
TGTGCACATGTGCCGCCACACTCTTATCTGTCTTGACTAGATCAGTAAGCACCGCCTGTT
CGAACAATTTATCGATCATCGGCACGTCTTTGTCATTTCCCTTTAGCCACCATCTCTT
■■Homology search results ■■ -
sp_hit_id Q6MDC0
Definition sp|Q6MDC0|SYFA_PARUW Phenylalanyl-tRNA synthetase alpha chain OS=Protochlamydia amoebophila (strain UWE25)
Align length 55
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919231|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_F12.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6MDC0|SYFA_PARUW Phenylalanyl-tRNA synthetase alpha chain OS...    32   2.6  
sp|Q6C5K4|SDS23_YARLI Protein SDS23 OS=Yarrowia lipolytica GN=SD...    31   3.3  
sp|Q1RLK6|B3GN4_MOUSE UDP-GlcNAc:betaGal beta-1,3-N-acetylglucos...    31   3.3  
sp|Q6DDV1|DTWD1_XENLA DTW domain-containing protein 1 OS=Xenopus...    30   5.7  
sp|Q9QX47|SON_MOUSE SON protein OS=Mus musculus GN=Son PE=1 SV=1       30   9.7  
sp|P19758|HN_SENDF Hemagglutinin-neuraminidase OS=Sendai virus (...    30   9.8  

>sp|Q6MDC0|SYFA_PARUW Phenylalanyl-tRNA synthetase alpha chain
           OS=Protochlamydia amoebophila (strain UWE25) GN=pheS
           PE=3 SV=1
          Length = 346

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 151 YGNPLYNLRLHLNNPQLRDCQFLQPQIACLHPSKALLARTLSSSSPIASHTQEAI 315
           Y +P   LR H +N Q R  +  +P I  + P K     T+++ S +  H  EA+
Sbjct: 164 YISPHVLLRTHTSNIQARAMELNRPPIRIIAPGKVYRNETITARSHVFFHQVEAV 218


>sp|Q6C5K4|SDS23_YARLI Protein SDS23 OS=Yarrowia lipolytica GN=SDS23
           PE=3 SV=1
          Length = 505

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 207 LPIPAASNCMPASIQSSLSP-HSFIILSHCLAYAGSHFLSVXXXXXXXKSPG*NKYPSPA 383
           L +PA S   P S Q++LSP +S I  +   A  GSH   +       + P    +  PA
Sbjct: 17  LAVPAPSQASPQSPQAALSPSNSSIQATFARARKGSHASQM-------ERPNNRDFAIPA 69

Query: 384 GYP*ALKSLIGEMCTCAATLLSVLTRSVSTACSNN 488
             P   +S I E+ T    +    +RS S+A SNN
Sbjct: 70  S-PTVGESSIAELVTAPPAVTPSRSRS-SSAASNN 102


>sp|Q1RLK6|B3GN4_MOUSE UDP-GlcNAc:betaGal
           beta-1,3-N-acetylglucosaminyltransferase 4 OS=Mus
           musculus GN=B3gnt4 PE=2 SV=1
          Length = 350

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 453 LTRSVSTACSNNLSIIGTSLSFPFSHHL 536
           L RS  + CS NL+++ TSLS P  H L
Sbjct: 42  LPRSHHSQCSPNLTVVNTSLSLPSRHRL 69


>sp|Q6DDV1|DTWD1_XENLA DTW domain-containing protein 1 OS=Xenopus
           laevis GN=dtwd1 PE=2 SV=1
          Length = 291

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 508 DVPMIDKLFEQAVLTDLVKTD-KSVAAHVHISPIRDFNAYGYPAGEGYLFQPGDFVVHGP 332
           D+P++    +  ++    +TD KS A H  +    D   Y YP    Y  Q  + VV  P
Sbjct: 77  DIPVVKLPLKIDIIKHPNETDGKSTAVHAKLLAHEDVTVYTYPCVPQYHDQKHEVVVVFP 136

Query: 331 GP 326
           GP
Sbjct: 137 GP 138


>sp|Q9QX47|SON_MOUSE SON protein OS=Mus musculus GN=Son PE=1 SV=1
          Length = 2404

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 411  IGEMCTCAATLLSVLTRSVSTACSNNLSIIGTSLSFPF 524
            I E+ TCAA   + + RS+S+  +  L  +GTS  F F
Sbjct: 1564 ITELATCAAVSEADIGRSLSSQLALELDTVGTSKGFEF 1601


>sp|P19758|HN_SENDF Hemagglutinin-neuraminidase OS=Sendai virus
           (strain Fushimi) GN=HN PE=1 SV=1
          Length = 575

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 526 LKGNDKDV-PMIDKLFEQAVLTDLVKTDKSVAAHVHISPIRDFNAYGYPAGEGYLFQPGD 350
           L  N +DV  MIDK   +  LT L ++  +V     I+P+   + +  P GE YL     
Sbjct: 114 LNKNSRDVIQMIDKSCSRQELTQLCESTIAVHHAEGIAPLEPHSFWRCPVGEPYLSSDPK 173

Query: 349 FVVHGPGPTL 320
             +  PGP+L
Sbjct: 174 ISLL-PGPSL 182
tr_hit_id Q6C659
Definition tr|Q6C659|Q6C659_YARLI YALI0E12199p OS=Yarrowia lipolytica
Align length 82
Score (bit) 37.7
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919231|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_F12.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6C659|Q6C659_YARLI YALI0E12199p OS=Yarrowia lipolytica GN=YA...    38   0.39 
tr|B6K6R3|B6K6R3_SCHJP Alpha-1,2-galactosyltransferase gmh3 OS=S...    37   0.50 
tr|A4R754|A4R754_MAGGR Putative uncharacterized protein OS=Magna...    33   7.2  
tr|Q8Y305|Q8Y305_RALSO Probable lipoprotein OS=Ralstonia solanac...    33   7.3  
tr|Q6C7G4|Q6C7G4_YARLI YALI0E01034p OS=Yarrowia lipolytica GN=YA...    33   7.3  
tr|B5SED6|B5SED6_RALSO Lipoprotein OS=Ralstonia solanacearum IPO...    33   9.5  
tr|B5S7Q1|B5S7Q1_RALSO Lipoprotein OS=Ralstonia solanacearum GN=...    33   9.5  

>tr|Q6C659|Q6C659_YARLI YALI0E12199p OS=Yarrowia lipolytica
           GN=YALI0E12199g PE=4 SV=1
          Length = 582

 Score = 37.7 bits (86), Expect = 0.39
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
 Frame = -1

Query: 481 EQAVLTDLVKTDKSVAAHVHISPIRDFNAYGYPAGEGYLFQPGDFVVHGPG----PTLKK 314
           EQ  L +L++  KS+ +H  I P R FN+Y     + + ++ GD  +H  G       +K
Sbjct: 491 EQEALNNLIRGHKSILSHTGIYPQRLFNSYTGEPNDVWTYKEGDLALHLAGCNHNNDCEK 550

Query: 313 WLPAYARQWERM---MKECGLR 257
            L  Y  Q  R+    +E GLR
Sbjct: 551 HLTGYFPQRVRVPEKYRESGLR 572


>tr|B6K6R3|B6K6R3_SCHJP Alpha-1,2-galactosyltransferase gmh3
           OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_04401
           PE=4 SV=1
          Length = 332

 Score = 37.4 bits (85), Expect = 0.50
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = -1

Query: 481 EQAVLTDLVKTDKSVAAHVHISPIRDFNAYGYPAGEGYLFQPGDFVVHGPGPTLKKWLPA 302
           EQA+L   V+    +A+HV +   R  NAY  P G    ++PGD VVH  G     W+  
Sbjct: 262 EQALLCYFVRHHPEIASHVGLVEQRLINAY--PQGYNMDWRPGDLVVHLAG----CWVEN 315

Query: 301 YARQW 287
           +  +W
Sbjct: 316 HCEEW 320


>tr|A4R754|A4R754_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_03355 PE=4 SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 386 PCGRRVLVSTRRLCGSWPGADAQEMASCVCEAMGEDDE 273
           P G RV   T RLCG W  A+A +    +C A   D E
Sbjct: 50  PDGSRVADGTTRLCGKWYTAEADDSCVVICMASSIDAE 87


>tr|Q8Y305|Q8Y305_RALSO Probable lipoprotein OS=Ralstonia
           solanacearum GN=RSc0176 PE=4 SV=1
          Length = 299

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 340 HGPGPTLKKWLPAYARQWERMMKECGL-RELWMDAGMQFEAAGIGNL 203
           H   PT+ +WL AYA QWE    E G  R+ ++DA +      I NL
Sbjct: 205 HPDKPTVMQWLTAYADQWEHPPGERGARRDAYLDASVDVSVT-IANL 250


>tr|Q6C7G4|Q6C7G4_YARLI YALI0E01034p OS=Yarrowia lipolytica
           GN=YALI0E01034g PE=4 SV=1
          Length = 665

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = -1

Query: 508 DVPMIDKLF---EQAVLTDLVKTDKSVAAHVHISPIRDFNAYGYPAGEGYLFQPGDFVVH 338
           D   IDK +   EQ  L  L+++ K+V  H  + P R FN+Y     + + F+  D  VH
Sbjct: 571 DQHFIDKNYVFREQQALNHLLRSHKTVLQHTGLYPQRLFNSYLGNEKDVWKFKEDDLAVH 630

Query: 337 ----GPGPTLKKWLPAYARQWERMMKE 269
               G   T +     Y +  +R+ KE
Sbjct: 631 FAGCGSSRTCEDKFSRYMKIRKRVPKE 657


>tr|B5SED6|B5SED6_RALSO Lipoprotein OS=Ralstonia solanacearum
           IPO1609 GN=RSIPO_00230 PE=4 SV=1
          Length = 324

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 340 HGPGPTLKKWLPAYARQWERMMKECGL-RELWMDAGM 233
           H   PT+ +WL AYA QWE    E G  R+ ++DA +
Sbjct: 229 HPDKPTVMQWLTAYADQWEHPPGERGARRDAYLDASV 265


>tr|B5S7Q1|B5S7Q1_RALSO Lipoprotein OS=Ralstonia solanacearum
           GN=RSMK03949 PE=4 SV=1
          Length = 324

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 340 HGPGPTLKKWLPAYARQWERMMKECGL-RELWMDAGM 233
           H   PT+ +WL AYA QWE    E G  R+ ++DA +
Sbjct: 229 HPDKPTVMQWLTAYADQWEHPPGERGARRDAYLDASV 265