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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919233
Clone id YMU001_000122_G02
Library
Length 414
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCACCATCACTGATCAATGTAGCTCATGTGCATGCATGCAACACCCAACACAATGCCCAT
GAAATGGAAAGGGGGAACGAGCCATAACTCCTCTCTCTTCCCTTTCTCAATGAAGACCAT
CTCCCCGNTATAAGTACCCTAACACCTCATCCCCAACACTCGTACGTGGGATTTTTTCCA
CCATGTGCCACTTCCATGAGAGATCCCCCCCATGGGTTATTGGAATCCGTAAGATTTTCA
AAAGAAAACCATTTTTTTGTAGTACTTTGAACCACAATAACTTTCAGCTTTAGAGTCAGA
TGGACCTCTTGTAAAGCCGTAGTGAAACTCTACTTTGTCGACTTTCCATTTTAGAACCCC
ATTGCAATTGCAAGTTGAAAACCAAAAGGCATTTAACAGAAGTTCCCAAAATGG
■■Homology search results ■■ -
sp_hit_id Q8LBQ7
Definition sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana
Align length 56
Score (bit) 32.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919233|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_G02.
         (414 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor E...    32   1.00 
sp|Q5N3S0|3MGH_SYNP6 Putative 3-methyladenine DNA glycosylase OS...    31   2.2  
sp|Q31QG8|3MGH_SYNE7 Putative 3-methyladenine DNA glycosylase OS...    31   2.2  
sp|Q17771|NHR35_CAEEL Nuclear hormone receptor family member nhr...    30   3.8  
sp|Q01583|DGK1_DROME Diacylglycerol kinase 1 OS=Drosophila melan...    30   4.9  
sp|Q9UYZ2|VORB_PYRAB Ketoisovalerate oxidoreductase subunit vorB...    29   6.4  
sp|P16065|GCY_STRPU Speract receptor OS=Strongylocentrotus purpu...    29   6.4  

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor
           ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2
          Length = 295

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 227 DSNNPWGGSLMEVAHGGKNPTYECWG*GVRVLIXGRW-SSLRKGRERS---YGSFP 72
           D  N  GG   +   G K+PTY     GVR+   G+W S +R+ R++S    G++P
Sbjct: 79  DDQNGGGGKRRKTNGGDKHPTYR----GVRMRSWGKWVSEIREPRKKSRIWLGTYP 130


>sp|Q5N3S0|3MGH_SYNP6 Putative 3-methyladenine DNA glycosylase
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=syc0860_c PE=3 SV=1
          Length = 199

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 250 GFLLKILRIPITHGGDLSWKWHMVE 176
           G L++  RI +T G DL W+W++ E
Sbjct: 155 GTLIQTTRIGLTRGVDLPWRWYLAE 179


>sp|Q31QG8|3MGH_SYNE7 Putative 3-methyladenine DNA glycosylase
           OS=Synechococcus elongatus (strain PCC 7942)
           GN=Synpcc7942_0669 PE=3 SV=1
          Length = 194

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 250 GFLLKILRIPITHGGDLSWKWHMVE 176
           G L++  RI +T G DL W+W++ E
Sbjct: 150 GTLIQTTRIGLTRGVDLPWRWYLAE 174


>sp|Q17771|NHR35_CAEEL Nuclear hormone receptor family member nhr-35
           OS=Caenorhabditis elegans GN=nhr-35 PE=2 SV=3
          Length = 542

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 94  SLPFLNEDHLPXISTLTPHPQHSYVGFFPPCATSMRDPPHGLLESVRFSK-ENHFFVVL* 270
           +L  LN+ ++P  S  TPH +    GF+      + D    L+E +RF K +N  FV L 
Sbjct: 292 ALKLLNDLYIPRASKTTPHLKEYVDGFYLRDCEKVMDQ---LVEPMRFLKLDNKEFVALK 348

Query: 271 TTITFS 288
             + F+
Sbjct: 349 ACVLFN 354


>sp|Q01583|DGK1_DROME Diacylglycerol kinase 1 OS=Drosophila
            melanogaster GN=Dgk PE=2 SV=5
          Length = 1211

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 235  ILRIPITHGGDLSWKWHMVEKIPRTSVG 152
            +L IP THGG   W  H+ +K  R S G
Sbjct: 1064 LLNIPYTHGGSNLWGEHLSQKRIRKSAG 1091


>sp|Q9UYZ2|VORB_PYRAB Ketoisovalerate oxidoreductase subunit vorB
           OS=Pyrococcus abyssi GN=vorB PE=3 SV=1
          Length = 311

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 112 EDHLPXISTLTPHPQHSYVGFFPPCATSMRDPPHGLLESVRFSKENHFF 258
           ED L  +      P  S++  F PC T  R P    +E  R + +  +F
Sbjct: 199 EDFLRKLKKAQKIPGPSFIQLFAPCPTGWRAPTDKTIEIARLAVQTAYF 247


>sp|P16065|GCY_STRPU Speract receptor OS=Strongylocentrotus
           purpuratus PE=2 SV=1
          Length = 1125

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 198 HGSGTWWKKSHVRVLGMRC*GTYXGEM 118
           H    WWK+  V V+G  C  TY G +
Sbjct: 100 HAVSDWWKRGFVGVIGPGCGCTYEGRL 126
tr_hit_id B2IKE9
Definition tr|B2IKE9|B2IKE9_BEII9 Carbohydrate-selective porin OprB OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
Align length 43
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919233|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_G02.
         (414 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2IKE9|B2IKE9_BEII9 Carbohydrate-selective porin OprB OS=Beij...    33   5.4  
tr|B2IBK5|B2IBK5_BEII9 Carbohydrate-selective porin OprB OS=Beij...    33   5.4  
tr|Q9X5T3|Q9X5T3_STRLA MmcO OS=Streptomyces lavendulae GN=mmcO P...    33   7.1  
tr|Q4SZB5|Q4SZB5_TETNG Chromosome undetermined SCAF11729, whole ...    33   9.2  
tr|A7K8T5|A7K8T5_9PHYC Putative uncharacterized protein z325L OS...    33   9.2  
tr|B8HVZ4|B8HVZ4_9CHRO DNA-3-methyladenine glycosylase OS=Cyanot...    33   9.3  
tr|B5HJ46|B5HJ46_STRPR Glutamine synthetase OS=Streptomyces pris...    33   9.3  
tr|B5GXG7|B5GXG7_STRCL Glutamine synthetase OS=Streptomyces clav...    33   9.3  

>tr|B2IKE9|B2IKE9_BEII9 Carbohydrate-selective porin OprB
           OS=Beijerinckia indica subsp. indica (strain ATCC 9039 /
           DSM 1715 / NCIB 8712) GN=Bind_2860 PE=3 SV=1
          Length = 454

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 396 LNAFWFSTCNCNGVLKWKVDKVEFHYGFTRGPSDSKAESYCGS 268
           L  FW+     NGV+ WK+ K+      T+ P      S+CGS
Sbjct: 156 LTQFWYDQKFANGVIDWKIGKMAVSEDITQYPCVFMNLSFCGS 198


>tr|B2IBK5|B2IBK5_BEII9 Carbohydrate-selective porin OprB
           OS=Beijerinckia indica subsp. indica (strain ATCC 9039 /
           DSM 1715 / NCIB 8712) GN=Bind_2838 PE=3 SV=1
          Length = 455

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 396 LNAFWFSTCNCNGVLKWKVDKVEFHYGFTRGPSDSKAESYCGS 268
           L  FW+     NGV+ WK+ K+      T+ P      S+CGS
Sbjct: 157 LTQFWYDQKFANGVIDWKIGKMAVSEDITQYPCVFMNLSFCGS 199


>tr|Q9X5T3|Q9X5T3_STRLA MmcO OS=Streptomyces lavendulae GN=mmcO PE=4
           SV=1
          Length = 474

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 207 GISHGSGTWWKKSHVRVLGMRC*GTYXGEMVFIEKGKREELWLVP 73
           G+    G+WW +S   +L   C G    +M+F+ +G+   +  +P
Sbjct: 91  GVGDNRGSWWMRSRRHILRAACDGFRWPDMLFVPEGRETRIVWMP 135


>tr|Q4SZB5|Q4SZB5_TETNG Chromosome undetermined SCAF11729, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00009924001 PE=4 SV=1
          Length = 566

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 73  GNEP*LLSLPFLNEDHLP-XISTLTPHPQHSYVGFFPPCATSMRDPPHGLLE 225
           G+EP +L++  L+E+H+P   S+L+    +S    FPP   +M   P G L+
Sbjct: 397 GHEPVVLTIKTLDEEHVPASSSSLSKFSNNSMPTTFPPTTATMLTCPAGTLQ 448


>tr|A7K8T5|A7K8T5_9PHYC Putative uncharacterized protein z325L
           OS=Acanthocystis turfacea Chlorella virus 1 GN=z325L
           PE=4 SV=1
          Length = 164

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 175 FPPCATSMRDPPH-----GLLESVRFSKENHFFVVL*TTITFSFRVRWTSCKAVVKLYFV 339
           F   +TS R PPH        +S  F++ + F VVL TT + S+R  W +    V L+F 
Sbjct: 2   FSATSTSRR-PPHLHVYVSFTDSCSFAEMSAFIVVLFTTFSTSYRYFWKT----VLLFFT 56

Query: 340 DF 345
           DF
Sbjct: 57  DF 58


>tr|B8HVZ4|B8HVZ4_9CHRO DNA-3-methyladenine glycosylase
           OS=Cyanothece sp. PCC 7425 GN=Cyan7425_0785 PE=4 SV=1
          Length = 201

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 277 LWFKVLQKNGFLLKILRIPITHGGDLSWKWHM 182
           L  ++  +NG L++  RI +T G DL W+W++
Sbjct: 161 LQVQLASQNGALIQTTRIGLTQGKDLPWRWYL 192


>tr|B5HJ46|B5HJ46_STRPR Glutamine synthetase OS=Streptomyces
           pristinaespiralis ATCC 25486 GN=SSDG_05174 PE=4 SV=1
          Length = 453

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 272 VQSTTKKWF-SFENLTDSNNPWGGSLMEVAHGGKNPTYECWG 150
           + + T +W  S++ +      WGGS      GG+ P+Y CWG
Sbjct: 283 ISAVTNQWVNSYKRI------WGGSARSAGAGGEAPSYICWG 318


>tr|B5GXG7|B5GXG7_STRCL Glutamine synthetase OS=Streptomyces
           clavuligerus ATCC 27064 GN=SSCG_04138 PE=4 SV=1
          Length = 453

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 272 VQSTTKKWF-SFENLTDSNNPWGGSLMEVAHGGKNPTYECWG 150
           + + T +W  S++ +      WGGS      GG+ P+Y CWG
Sbjct: 283 ISAVTNQWVNSYKRI------WGGSARSAGAGGEAPSYICWG 318