BP919234
Clone id YMU001_000122_G03
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCCTTCCTAAACTATCGTGTTTTCTAGCTAGAATAGATTGTTACTGCTCTGCGATGATGG
GCACAATCTGTTGACTGTTGCAGAGCTACGTCTGGCGCCATGGCAGGAGCCTTCCGTTGC
TCCTCAACTAAGGCTTCTCCCTTTGTTGTCAGAGTGGCTGCCATGTCATACCCTCACCCT
ACAGAGCTTTTGTAGTTCTTTTGTGAAATTGGGGTGGTAGGACCTATATATCCAGATGTA
GAATGGAGCGAAGCCAGCAAAGCTATTTGCTGCTGATGATGGACAGGCCACAAGTGGATG
ACTTGCTAGACCAGGTTGAAGACCCACCATTGCAAAAGATAGAAGATATGAAAACAGAGG
TTTTGCATGAGCTATCACCTTGACCAGCTCAATGCAATCGAAACATATAAAGGAGACCTT
GATGATATTCAGTAAATGAGCAGCAAGTCATATCCCACCTTATGTGAATAGTATCTAGTT
TGCAACAAACAAAAATTTTGGCTTCTGTAACTCGGCATCGGTTCATGTCTGGAGTCTCAG
ATCTGGTCATTGTACCTATTGCTGGGTGTA
■■Homology search results ■■ -
sp_hit_id Q3KPU8
Definition sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis
Align length 45
Score (bit) 33.9
E-value 0.58
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919234|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_G03.
(570 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis ... 34 0.58
sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus G... 34 0.58
sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus... 32 1.7
sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus GN... 32 1.7
sp|Q96A37|RN166_HUMAN RING finger protein 166 OS=Homo sapiens GN... 32 1.7
sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster G... 31 3.8
sp|Q5M3S7|SYFB_STRT2 Phenylalanyl-tRNA synthetase beta chain OS=... 31 4.9
sp|Q5LZ72|SYFB_STRT1 Phenylalanyl-tRNA synthetase beta chain OS=... 31 4.9
sp|Q0AHU1|RF1_NITEC Peptide chain release factor 1 OS=Nitrosomon... 30 8.4

>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis
GN=rnf166 PE=2 SV=1
Length = 241

Score = 33.9 bits (76), Expect = 0.58
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -2

Query: 515 PSYRSQNFCLLQTRYYSHKVGYDLLLIY*ISSRSPLYVSIALSWS 381
PSY+S NF LQ + HK YD + Y I + L ++ALS S
Sbjct: 197 PSYKSANF--LQHLLHRHKFSYDTFVDYSIDEEAALQAALALSLS 239


>sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus
GN=RNF166 PE=2 SV=1
Length = 244

Score = 33.9 bits (76), Expect = 0.58
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -2

Query: 515 PSYRSQNFCLLQTRYYSHKVGYDLLLIY*ISSRSPLYVSIALSWS 381
PSY+S NF LQ + HK YD + Y I + L ++ALS S
Sbjct: 200 PSYKSANF--LQHLLHRHKFSYDTFVDYNIDEEAALQAALALSLS 242


>sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus
GN=Rnf166 PE=2 SV=1
Length = 237

Score = 32.3 bits (72), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2

Query: 515 PSYRSQNFCLLQTRYYSHKVGYDLLLIY*ISSRSPLYVSIALSWS 381
PSY+S NF LQ + HK YD + Y I + ++ALS S
Sbjct: 193 PSYKSANF--LQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLS 235


>sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus
GN=Rnf166 PE=2 SV=1
Length = 237

Score = 32.3 bits (72), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2

Query: 515 PSYRSQNFCLLQTRYYSHKVGYDLLLIY*ISSRSPLYVSIALSWS 381
PSY+S NF LQ + HK YD + Y I + ++ALS S
Sbjct: 193 PSYKSANF--LQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLS 235


>sp|Q96A37|RN166_HUMAN RING finger protein 166 OS=Homo sapiens
GN=RNF166 PE=2 SV=1
Length = 237

Score = 32.3 bits (72), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2

Query: 515 PSYRSQNFCLLQTRYYSHKVGYDLLLIY*ISSRSPLYVSIALSWS 381
PSY+S NF LQ + HK YD + Y I + ++ALS S
Sbjct: 193 PSYKSANF--LQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLS 235


>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w
PE=1 SV=2
Length = 687

Score = 31.2 bits (69), Expect = 3.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1

Query: 402 FDCIELVKVIAHAKPLFSYLLSFAMVGLQPGLASHPLVACPSSAANSF---AGFAPFYI- 235
F+C+ LV ++A+ F YL+S A L+ P V P F +G P Y+
Sbjct: 543 FNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLK 602

Query: 234 WI 229
W+
Sbjct: 603 WL 604


>sp|Q5M3S7|SYFB_STRT2 Phenylalanyl-tRNA synthetase beta chain
OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG
18311) GN=pheT PE=3 SV=2
Length = 802

Score = 30.8 bits (68), Expect = 4.9
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Frame = -2

Query: 278 HQQQIALLASLHSTSGYIGPTTPISQKNYKSSVG*GYDMAATLTTKGEALVEEQ-----R 114
H + A + T G++G P + KNY + Y L+ +AL Q
Sbjct: 652 HPGRTAAIVLDGQTIGFLGQVHPQTAKNY--GIPETYVAEINLSAVEDALKPAQPFVEIT 709

Query: 113 KAPAMAPDVALQQSTDCAHHRRAVTIYSS 27
K PA++ D+AL D H IYS+
Sbjct: 710 KFPAVSRDIALLLKADITHQEVLDAIYSA 738


>sp|Q5LZ72|SYFB_STRT1 Phenylalanyl-tRNA synthetase beta chain
OS=Streptococcus thermophilus (strain CNRZ 1066) GN=pheT
PE=3 SV=2
Length = 802

Score = 30.8 bits (68), Expect = 4.9
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Frame = -2

Query: 278 HQQQIALLASLHSTSGYIGPTTPISQKNYKSSVG*GYDMAATLTTKGEALVEEQ-----R 114
H + A + T G++G P + KNY + Y L+ +AL Q
Sbjct: 652 HPGRTAAIVLDGQTIGFLGQVHPQTAKNY--GIPETYVAEINLSAVEDALKPAQPFVEIT 709

Query: 113 KAPAMAPDVALQQSTDCAHHRRAVTIYSS 27
K PA++ D+AL D H IYS+
Sbjct: 710 KFPAVSRDIALLLKADITHQEVLDAIYSA 738


>sp|Q0AHU1|RF1_NITEC Peptide chain release factor 1 OS=Nitrosomonas
eutropha (strain C91) GN=prfA PE=3 SV=1
Length = 359

Score = 30.0 bits (66), Expect = 8.4
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +3

Query: 219 RTYISRCRMERSQQSYLLLMMDRPQVDDLLDQVEDPPLQKIEDMKTEVLHELSP*PAQCN 398
R Y + ++E+ + + + +D PQ D + D QK+ D++TE+L +L P
Sbjct: 50 RFYHTYQQVEQDLATAMEMSVD-PQFRDFAEAEIDADKQKLADIETEILKQLLPRDPNDE 108

Query: 399 RNI 407
RNI
Sbjct: 109 RNI 111


tr_hit_id A7F1E0
Definition tr|A7F1E0|A7F1E0_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 37
Score (bit) 35.0
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919234|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_G03.
(570 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7F1E0|A7F1E0_SCLS1 Putative uncharacterized protein OS=Scler... 35 2.9
tr|A4SSG9|A4SSG9_AERS4 Acetyltransferase, GNAT family OS=Aeromon... 35 3.8
tr|A0RD24|A0RD24_BACAH Putative uncharacterized protein OS=Bacil... 34 5.0
tr|Q0VFJ0|Q0VFJ0_XENTR Ring finger protein 166 OS=Xenopus tropic... 34 6.5

>tr|A7F1E0|A7F1E0_SCLS1 Putative uncharacterized protein
OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
Ss-1) GN=SS1G_11410 PE=4 SV=1
Length = 72

Score = 35.0 bits (79), Expect = 2.9
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2

Query: 302 VIHLWPVHHQQQIALLASLHSTSGYIGPTTPISQKNY 192
+IH +PVH+ +Q +L S HS++ Y G PIS Y
Sbjct: 18 IIHRFPVHYTKQYQVLFSTHSSTTYQGQICPISSIIY 54


>tr|A4SSG9|A4SSG9_AERS4 Acetyltransferase, GNAT family OS=Aeromonas
salmonicida (strain A449) GN=ASA_3887 PE=4 SV=1
Length = 237

Score = 34.7 bits (78), Expect = 3.8
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3

Query: 123 LN*GFSLCCQSGCHVIPSPYRAFVVLL*NWGGR 221
LN +CC SGC IPS RA+ L WG R
Sbjct: 166 LNAKSCICCNSGCRAIPSGLRAYSTLGGTWGWR 198


>tr|A0RD24|A0RD24_BACAH Putative uncharacterized protein OS=Bacillus
thuringiensis (strain Al Hakam) GN=BALH_1795 PE=4 SV=1
Length = 513

Score = 34.3 bits (77), Expect = 5.0
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +3

Query: 207 NWGGRTYISRCRMERSQQSYLLLMMDRPQVDDLLDQVEDPPLQKIEDMKTEVLHELSP 380
N GG S+ R R Q +L Q+D +L V D +K ++KT++ HELSP
Sbjct: 278 NTGGTVAESKPRYTREQIEHLAESNFENQIDSVLRDV-DMSREKFNELKTKMYHELSP 334


>tr|Q0VFJ0|Q0VFJ0_XENTR Ring finger protein 166 OS=Xenopus
tropicalis GN=rnf166 PE=2 SV=1
Length = 241

Score = 33.9 bits (76), Expect = 6.5
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -2

Query: 515 PSYRSQNFCLLQTRYYSHKVGYDLLLIY*ISSRSPLYVSIALSWS 381
PSY+S NF LQ + HK YD + Y I + L ++ALS S
Sbjct: 197 PSYKSANF--LQHLLHRHKFSYDTFVDYSIDEEAALQAALALSLS 239