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NBDC - LSDB Archive
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BP919245
Clone id YMU001_000122_H02
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCGTGGAGCTATCCAGTGCCAGAAACTCTGCCGACGTTCCATGGCTGTCTTCATTAACA
CATCTCCACATTGTGCATCCAACCCGGGCTCCCCTCGTTTGATTATCTGTCTACCAATCT
CTGGCGGAAATTGTCGATGCGGCATGCTTTGAATGGCATGGGCAGGTTGTGATGCTGAAC
TTGCATCCTCGTTACCTAACGGCCCTATGCCCAGCCTTAGCTCTATATCTCCGCATTCCA
GTCCCTTGTCCTCTGCATCACACTCATCACATGCTGTAGAATAGGCTAATTGAGTGTTTT
GTACCGGGGACGAGTCGGATGTCTTTGATAGCCCTAAGTAATCGTGTTCAGTCAAAGCAG
AATTGGAAGGAGTAAGGCAGTTAGCCCTGCTTTCCACTTCCTTTTTTTAGTTGGAGACAC
TAACTGGCCATGCATCATCATGATCCGCCTTGCTCAACATGCTCTTTTCTCAAATGCCCT
CAACTTATAATTTTCAGACCACTATATGATATTGCTTGCGCAGCTTCGACCTACCTGCAC
AACT
■■Homology search results ■■ -
sp_hit_id O88278
Definition sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus
Align length 51
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919245|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_H02.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor ...    32   2.6  
sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type recepto...    32   2.6  
sp|Q1LUT1|EDC4_DANRE Enhancer of mRNA-decapping protein 4 OS=Dan...    31   3.4  
sp|A4J5Y2|SYP_DESRM Prolyl-tRNA synthetase OS=Desulfotomaculum r...    31   4.4  
sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein...    30   5.8  
sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kin...    30   7.6  
sp|O14234|CCH1_SCHPO Calcium-channel protein cch1 OS=Schizosacch...    30   7.6  
sp|Q9UKP4|ATS7_HUMAN A disintegrin and metalloproteinase with th...    30   7.6  
sp|Q9UHK0|NUFP1_HUMAN Nuclear fragile X mental retardation-inter...    30   9.9  
sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcriptio...    30   9.9  
sp|P80019|K6PF_LACDE 6-phosphofructokinase OS=Lactobacillus delb...    30   9.9  

>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3
            OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1
          Length = 3313

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -1

Query: 298  NTQLAYSTACDECDAEDKGLECGDIELRLGIGPLGNEDASSASQPAHAIQS 146
            N  L+Y  A  EC+A    L+    E RLG+    N+DA++ +QP  A+ S
Sbjct: 2945 NDLLSYWPALGECEAAPCALQAWGSERRLGLD--SNKDAANNNQPELALTS 2993


>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3
            OS=Mus musculus GN=Celsr3 PE=2 SV=1
          Length = 3301

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -1

Query: 298  NTQLAYSTACDECDAEDKGLECGDIELRLGIGPLGNEDASSASQPAHAIQS 146
            N  L+Y  A  EC+A    L+    E RLG+    N+DA++ +QP  A+ S
Sbjct: 2937 NDLLSYWPALGECEAAPCALQAWGSERRLGLD--SNKDAANNNQPELALTS 2985


>sp|Q1LUT1|EDC4_DANRE Enhancer of mRNA-decapping protein 4 OS=Danio
           rerio GN=edc4 PE=2 SV=1
          Length = 1384

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 124 PEIGRQIIKRGEPGLDAQCGDVLMKTAMERRQSFWHWIAPR 2
           PEI  + ++RG  G +A  G +L   +M    S  H ++PR
Sbjct: 715 PEIASETLQRGLSGANADSGPILHSDSMASAASILHLLSPR 755


>sp|A4J5Y2|SYP_DESRM Prolyl-tRNA synthetase OS=Desulfotomaculum
           reducens (strain MI-1) GN=proS PE=3 SV=1
          Length = 569

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 244 GLECGDIELRLGIGPLGNEDASSASQPAHAIQSMPHRQFPPEIGRQI--IKRGEPGLDAQ 71
           GLE   I   + +  L N    +  Q AH I   P R F PEI   I  +K GEP    +
Sbjct: 338 GLENIRIVADMEVMALVNAVVGANKQDAHLINVNPKRDFQPEIVEDIRMVKAGEP--CPK 395

Query: 70  CGDVLMK 50
           CG  L++
Sbjct: 396 CGAQLLE 402


>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42
           OS=Oryza sativa subsp. japonica GN=Os06g0519400 PE=2
           SV=1
          Length = 279

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 238 ECGDIELRLGIGPLGNEDASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQCGDV 59
           EC + + R    P+    +SSAS PA AI   P +Q      + +  R   G  +  G+ 
Sbjct: 7   ECCNSDHRSSSTPMATTTSSSASDPA-AISPTPSQQHASSTVKTLDDRRPAGTSSSAGET 65

Query: 58  LMKTAMERRQ 29
             K A+E ++
Sbjct: 66  EPKAAVEPQE 75


>sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kinase
           7 OS=Drosophila melanogaster GN=Tak1 PE=2 SV=1
          Length = 678

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -1

Query: 433 AWPVSVSN*KKEVESRANCLTPSNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACD 266
           A P S+S+ + E+   +  LTP+ +A    + + +SKT+ SS  +NT    ST+ D
Sbjct: 301 AQPDSLSSQEGELSPSSTQLTPTTAANANVNAIAISKTTTSSMTENTS---STSSD 353


>sp|O14234|CCH1_SCHPO Calcium-channel protein cch1
           OS=Schizosaccharomyces pombe GN=cch1 PE=2 SV=1
          Length = 1854

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -1

Query: 442 HDDAWPVSVSN*KKEVESRANCLTPSNSALTEHDYLGLSKTSDSSP--VQNTQLAYSTAC 269
           HDD++  +V+  +  V    + ++ ++  +  H+ LG+++T D     +   QLAY T  
Sbjct: 46  HDDSYLDNVNPFEYNVADDEDTISMTSDGVEFHN-LGITETVDEQDKILSELQLAYPTVS 104

Query: 268 DECDAEDKGLECGD 227
              +  DKGL  GD
Sbjct: 105 RYSETLDKGLLNGD 118


>sp|Q9UKP4|ATS7_HUMAN A disintegrin and metalloproteinase with
           thrombospondin motifs 7 OS=Homo sapiens GN=ADAMTS7 PE=1
           SV=2
          Length = 1686

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = -1

Query: 211 GIGPLGNEDA------SSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQCGDVLMK 50
           G+  L NED       S+ ++P HA    PH  +  +   ++ +RG+    + CG V + 
Sbjct: 154 GVFQLSNEDYFIEPLDSAPARPGHA---QPHVVYKRQAPERLAQRGDSSAPSTCG-VQVY 209

Query: 49  TAMERRQSFW----HWIAPR 2
             +E R+  W     W  PR
Sbjct: 210 PELESRRERWEQRQQWRRPR 229


>sp|Q9UHK0|NUFP1_HUMAN Nuclear fragile X mental
           retardation-interacting protein 1 OS=Homo sapiens
           GN=NUFIP1 PE=1 SV=2
          Length = 495

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 202 PLGNEDASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQ 71
           P      SS SQP    QS+P    PP    QI+   +P  DAQ
Sbjct: 55  PAAGSKPSSESQPPMEAQSLPGA--PPPFDAQILPGAQPPFDAQ 96


>sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription
            subunit 12 OS=Caenorhabditis briggsae GN=dpy-22 PE=3 SV=1
          Length = 3941

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
 Frame = -1

Query: 397  VESRANCLTPSNSALTEHDYLG--LSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDI 224
            ++  A   T  NSA    D      +K +  +PV     A  T+  + +AE   +E  D+
Sbjct: 847  MDVEAEAATKRNSATNSKDDEAEDANKVAGDAPVVEATHAAGTSEKKPEAEVTPIETNDV 906

Query: 223  ELRLGIGPLGNEDASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQCGDVLMKT 47
            E+   + P  N++++S S    +  S    Q P E+     K   P  D    D   KT
Sbjct: 907  EME-SVDPATNKESTSDSTAEKSSDS----QEPMEVDDPQKKLPSPAADKAGDDASKKT 960
tr_hit_id Q1R110
Definition tr|Q1R110|Q1R110_CHRSD Alpha,alpha-trehalose-phosphate synthase (UDP-forming) OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)
Align length 71
Score (bit) 35.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919245|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_H02.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1R110|Q1R110_CHRSD Alpha,alpha-trehalose-phosphate synthase ...    35   2.6  
tr|B6QJW2|B6QJW2_PENMA Putative uncharacterized protein OS=Penic...    35   2.6  
tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome...    35   3.4  
tr|Q18K73|Q18K73_HALWD Probable formate/nitrite transport protei...    35   3.4  
tr|Q948Q1|Q948Q1_PHYPA IAA/AUX protein OS=Physcomitrella patens ...    34   5.8  
tr|A9T8J7|A9T8J7_PHYPA Predicted protein OS=Physcomitrella paten...    34   5.8  
tr|A5BI37|A5BI37_VITVI Putative uncharacterized protein OS=Vitis...    34   5.8  
tr|B6M9Y2|B6M9Y2_BRAFL Putative uncharacterized protein OS=Branc...    34   5.8  
tr|B1KQ97|B1KQ97_SHEWM AAA ATPase OS=Shewanella woodyi (strain A...    33   7.6  
tr|A9IUG6|A9IUG6_BORPD Putative dicarboxylic acid hydrolase OS=B...    33   7.6  
tr|Q4SFZ2|Q4SFZ2_TETNG Chromosome 7 SCAF14601, whole genome shot...    33   9.9  

>tr|Q1R110|Q1R110_CHRSD Alpha,alpha-trehalose-phosphate synthase
           (UDP-forming) OS=Chromohalobacter salexigens (strain DSM
           3043 / ATCC BAA-138 / NCIMB 13768) GN=Csal_0234 PE=4
           SV=1
          Length = 458

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -1

Query: 250 DKGLECGDIELRLGIGPLGNEDASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQ 71
           D  ++C    LR G+ P+G +   + ++  HAI   P  QF  ++G++ +  G   LD  
Sbjct: 210 DNVIDCLGHRLRTGVYPVGIDVDEAIAEAEHAITQAPACQFQADLGKRDLIIGADRLDYS 269

Query: 70  CGDVLMKTAME 38
            G V    A+E
Sbjct: 270 KGLVQRFNAIE 280


>tr|B6QJW2|B6QJW2_PENMA Putative uncharacterized protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_101070 PE=4
           SV=1
          Length = 233

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
 Frame = -1

Query: 367 SNSALTEHDYLG-----LSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELRLGIG 203
           + S++  HDY       + +T+DS+P  + +LA      E +   +G   G ++L  GI 
Sbjct: 53  TGSSVRGHDYSEAPQKLIHRTADSNPSSDEKLAQRRQKHEQETSPEGKR-GHVDLEDGIE 111

Query: 202 PLGNE-DASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLD 77
               E D + A +  H+ +S PH++F P +    +    PG +
Sbjct: 112 QQPREGDIAHAVEDNHS-ESAPHQRFQPGVHAGAVGTSTPGFE 153


>tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00015806001
            PE=4 SV=1
          Length = 989

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
 Frame = -1

Query: 397  VESRANCLTPSNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGL--ECGDI 224
            V+ R N + PS       D +   + + +S    T     TAC+ CD  +KG+   C +I
Sbjct: 738  VDDRPNSIGPSPKGKFRTDVVTTKEHTAASGGFTTSTPALTACENCDGSNKGIWKRCSEI 797

Query: 223  ELRLGIGPLGNEDASSASQPAHAIQSMPHR--QFPPEI---GRQIIKRGEPGLDAQCGDV 59
               +     GN  A  +  P  A  S   R  + PP      R   +R   G  +  GD 
Sbjct: 798  RYLISGIIRGNASALGSYTPPVAAGSGKRRFSEMPPHTTYRDRAAERRSLYGSSSSTGDS 857

Query: 58   L 56
            L
Sbjct: 858  L 858


>tr|Q18K73|Q18K73_HALWD Probable formate/nitrite transport protein
           OS=Haloquadratum walsbyi (strain DSM 16790) GN=focA PE=4
           SV=1
          Length = 602

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 292 QLAYSTACDECDAEDKGLECGDIELRLGIGPLGNEDASSASQPAHAIQ 149
           +L     CD   A D+GL+C D+ L      +G  DA+ A++ AHA+Q
Sbjct: 444 ELTNRLPCDFLIANDRGLDCSDVLL----PTVGGPDAALAAETAHALQ 487


>tr|Q948Q1|Q948Q1_PHYPA IAA/AUX protein OS=Physcomitrella patens
           GN=PpIAA1b PE=2 SV=1
          Length = 503

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
 Frame = -1

Query: 367 SNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELRLG----IGP 200
           S S L EHDY GLS+ S S+     Q       ++C  E+  L      L+LG    + P
Sbjct: 57  SGSTLKEHDYFGLSEVSSSNSSSGKQ------PEKCCREELNLNESATTLQLGPPAAVKP 110

Query: 199 LGNEDASS-----------ASQPAHAIQ 149
            G+ D +            A +PAH +Q
Sbjct: 111 SGHADGADAHDEGAGPENPAKRPAHHMQ 138


>tr|A9T8J7|A9T8J7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219923 PE=4 SV=1
          Length = 503

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
 Frame = -1

Query: 367 SNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELRLG----IGP 200
           S S L EHDY GLS+ S S+     Q       ++C  E+  L      L+LG    + P
Sbjct: 57  SGSTLKEHDYFGLSEVSSSNSSSGKQ------PEKCCREELNLNESATTLQLGPPAAVKP 110

Query: 199 LGNEDASS-----------ASQPAHAIQ 149
            G+ D +            A +PAH +Q
Sbjct: 111 SGHADGADAHDEGAGPENPAKRPAHHMQ 138


>tr|A5BI37|A5BI37_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010763 PE=4 SV=1
          Length = 907

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
 Frame = -1

Query: 394 ESRANCLTPSNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELR 215
           +   + +T SNS      YL L   SD S +QN    +ST                 +L 
Sbjct: 233 QQNQHVITSSNS------YLMLKTKSDGSSLQNRP--HSTN----------------DLP 268

Query: 214 LGIGPLGNEDASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQCG-----DVLMK 50
           +GI PLGN   S A   +     +    F  +IG Q+   G+       G     D+L+K
Sbjct: 269 VGISPLGNPAESIAGNESAHFNFLDDVYFQ-KIGGQVNPNGQRRDSVAVGTGDPVDILLK 327

Query: 49  TAMERRQSFWHWI 11
            ++E + SF  W+
Sbjct: 328 DSLEPQDSFGRWM 340


>tr|B6M9Y2|B6M9Y2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_79909 PE=4 SV=1
          Length = 1143

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = -1

Query: 373 TPSNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELRLGIGPLG 194
           T S++ L E D+   +  S   P        S + D+ D E   L   D +L LG+ PL 
Sbjct: 454 TISSADLQELDFAFQTYDSPEQP--------SLSVDDSDLEQPSLSVDDSDLDLGVMPLS 505

Query: 193 NEDASSASQPAHAIQSMP-HRQFPPEIGRQIIKRGEPGLDAQCGDVLMK 50
            ED  +       + S+P  +    ++  Q I   E   + +  D++ K
Sbjct: 506 EEDTDTTKPIIEVLNSIPGFKDETYKLAEQAINSAEVTTEDRPQDIVSK 554


>tr|B1KQ97|B1KQ97_SHEWM AAA ATPase OS=Shewanella woodyi (strain ATCC
           51908 / MS32) GN=Swoo_0454 PE=4 SV=1
          Length = 606

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 106 SVYQSLAEIVDAACFEWHGQVVMLNLHPRYLTALCPALALYL-----RIPVPCPLHHTHH 270
           S+ + + EIV+    + HG  V+L+ H     A  PA ALY      +IP  C LH +  
Sbjct: 298 SMSKLMLEIVEEEIVQKHGIPVLLSTHSPTTIACTPANALYKITAAEKIPTQCDLHDSMR 357

Query: 271 ML 276
           +L
Sbjct: 358 IL 359


>tr|A9IUG6|A9IUG6_BORPD Putative dicarboxylic acid hydrolase
           OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
           CCUG 43448) GN=Bpet3199 PE=4 SV=1
          Length = 297

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +1

Query: 154 WHGQVVMLNLHPRYLTALCPALALYLRIPVPCPLHHTHHM 273
           WH Q +M     R L AL P LA   R+PVPC   H  HM
Sbjct: 156 WHAQFLM---DVRQLPALMPRLA---RLPVPCVFDHMGHM 189