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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919252
Clone id YMU001_000123_A01
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTGGAAGAATTTGCGGCCGCGAATCTGTGCGTAACTTCTTGTGCTCATCACCATCATT
AAATACACGCTTCTTGGGTATTCGAGAACTTTTCCGCAATGTTGGCGCTTGCAACTCTCC
TCTATTATTTGCATTCGATGCTCCCCCATTCCCGTTCATGTGCACACTTTGCTCCAAATC
AAGAGAGCATTGATCATTGGAACCACTAATGGCATCTTCTCCTGAGCTCTCCTCCCCATA
AACTTGGCCATTACTTCTGTCTGGAGCGATTTCCTGTTCAATGTCTTTTCGTTGCTTCTG
CAACTTTTCCTCGCGCTTCTTTCTTGAAGACTCTTGGCCAAGGATCTTTTGAATTGCAAC
TGCCTGTATTTCCTTAGCATTTTTCTCTATCTGCTGCTTCCTCCGTCTCGCTGCCTCTTC
TTTCTTAATGGCATGCTCTGCTTCAGTAAGATTGTCCTTTTGCCTTATTGGCAGGACTGG
CTGCAAACTATTGGGGAAGCCCTCATTCATGTCCACTTCAGAATCTCC
■■Homology search results ■■ -
sp_hit_id Q57672
Definition sp|Q57672|VATC_METJA V-type ATP synthase subunit C OS=Methanocaldococcus jannaschii
Align length 43
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919252|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A01.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q57672|VATC_METJA V-type ATP synthase subunit C OS=Methanocal...    31   2.9  

>sp|Q57672|VATC_METJA V-type ATP synthase subunit C
           OS=Methanocaldococcus jannaschii GN=atpC PE=3 SV=2
          Length = 381

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 291 SARKSCRSNEKTLNRKSLQTEVMAKFMGRRAQEKMPLVVPMIN 163
           SA+K  +   K  + K+++T + AKF+G  A+E   L++P+ N
Sbjct: 117 SAKKVLKVFAKKFDIKNIKTLIRAKFVGLSAEETYALLIPLGN 159
tr_hit_id A7PRQ9
Definition tr|A7PRQ9|A7PRQ9_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera
Align length 54
Score (bit) 40.8
E-value 0.037
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919252|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A01.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PRQ9|A7PRQ9_VITVI Chromosome chr14 scaffold_27, whole genom...    41   0.037
tr|A5AYG9|A5AYG9_VITVI Putative uncharacterized protein OS=Vitis...    41   0.037
tr|A9SLZ3|A9SLZ3_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.53 
tr|A7Q0P1|A7Q0P1_VITVI Chromosome chr7 scaffold_42, whole genome...    36   0.90 
tr|A5BHN9|A5BHN9_VITVI Putative uncharacterized protein OS=Vitis...    36   0.90 
tr|A8XDB1|A8XDB1_CAEBR Putative uncharacterized protein (Fragmen...    35   2.6  
tr|Q8MPS7|Q8MPS7_CAEEL Putative uncharacterized protein OS=Caeno...    34   4.5  
tr|Q988B9|Q988B9_RHILO Mlr6805 protein (4-pyridoxolactonase) OS=...    33   5.8  
tr|Q9C7X2|Q9C7X2_ARATH Putative uncharacterized protein F13N6.4 ...    33   7.6  
tr|Q8GYE3|Q8GYE3_ARATH Putative uncharacterized protein At1g5646...    33   7.6  
tr|Q6CF65|Q6CF65_YARLI YALI0B09889p OS=Yarrowia lipolytica GN=YA...    33   7.6  
tr|Q9KIS0|Q9KIS0_CAMJJ VirB10 OS=Campylobacter jejuni subsp. jej...    33   9.9  
tr|A6UP52|A6UP52_METVS ATPase, A1 complex, subunit C OS=Methanoc...    33   9.9  

>tr|A7PRQ9|A7PRQ9_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022598001
           PE=4 SV=1
          Length = 506

 Score = 40.8 bits (94), Expect = 0.037
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = -1

Query: 472 FPNSLQPVLPIRQKDNLTXXXXXXXXXXXXXXXKQQIEKNAKEIQAVAIQKILG 311
           FPN L P  P +QK+ LT               + Q+EK A+E +A AI+KILG
Sbjct: 342 FPNGLPPAPPRKQKEKLTEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILG 395


>tr|A5AYG9|A5AYG9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023422 PE=4 SV=1
          Length = 848

 Score = 40.8 bits (94), Expect = 0.037
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = -1

Query: 472 FPNSLQPVLPIRQKDNLTXXXXXXXXXXXXXXXKQQIEKNAKEIQAVAIQKILG 311
           FPN L P  P +QK+ LT               + Q+EK A+E +A AI+KILG
Sbjct: 437 FPNGLPPAPPRKQKEKLTEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILG 490


>tr|A9SLZ3|A9SLZ3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_165644 PE=4 SV=1
          Length = 966

 Score = 37.0 bits (84), Expect = 0.53
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = -1

Query: 472  FPNSLQPVLPIRQKDNLTXXXXXXXXXXXXXXXKQQIEKNAKEIQAVAIQKILGXXXXXX 293
            +P  L   L  + K NL+               KQQ+EK A++IQA AIQ+ILG      
Sbjct: 802  YPEGLTNPLSRKGKINLSEAERQVKRVEAAHRRKQQVEKTARDIQATAIQRILGQDSTRK 861

Query: 292  XXXXXXXXXXKDIEQE 245
                      +DI+QE
Sbjct: 862  RRENRLEKQRQDIQQE 877


>tr|A7Q0P1|A7Q0P1_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028124001
           PE=4 SV=1
          Length = 515

 Score = 36.2 bits (82), Expect = 0.90
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -1

Query: 472 FPNSLQPVLPIRQKDNLTXXXXXXXXXXXXXXXKQQIEKNAKEIQAVAIQKILG 311
           FPN L P    +QK+ L+               K Q+EK A+E +A AI+KILG
Sbjct: 351 FPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRKMQVEKAARESEAEAIRKILG 404


>tr|A5BHN9|A5BHN9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041993 PE=4 SV=1
          Length = 556

 Score = 36.2 bits (82), Expect = 0.90
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -1

Query: 472 FPNSLQPVLPIRQKDNLTXXXXXXXXXXXXXXXKQQIEKNAKEIQAVAIQKILG 311
           FPN L P    +QK+ L+               K Q+EK A+E +A AI+KILG
Sbjct: 419 FPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRKMQVEKAARESEAEAIRKILG 472


>tr|A8XDB1|A8XDB1_CAEBR Putative uncharacterized protein (Fragment)
           OS=Caenorhabditis briggsae GN=CBG11312 PE=4 SV=1
          Length = 352

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
 Frame = -2

Query: 360 RKMLRKYRQLQFKRSLAKSLQERSARK-----SCRSNEKTLNRKSLQTEVMAKFMGRRAQ 196
           RK L K R++  +R   K L+E+ A        CR  E   NR SL  +V  + +    +
Sbjct: 142 RKQLNKKRKVVRERK-GKELKEKEAELRNLEWQCRILETVCNRFSLLLKVSGELVRESEE 200

Query: 195 EKMPLVVPMINAL---LIWSKVCT*TGMGEHRMQIIEESCKRQHCGKVLEYPRSVYLMMV 25
           +K+P ++ M++ L   L  +       +  H ++I+E+  K     KV +  R  + + V
Sbjct: 201 KKIPQLITMVDELKKKLDRNPYVLDDELTRHEVKILEKISKHSKVRKVAKKLRKWFRVEV 260

Query: 24  M 22
           +
Sbjct: 261 L 261


>tr|Q8MPS7|Q8MPS7_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=ZK354.2 PE=2 SV=1
          Length = 437

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 17/53 (32%), Positives = 33/53 (62%)
 Frame = -2

Query: 399 RKKRQRDGGSSR*RKMLRKYRQLQFKRSLAKSLQERSARKSCRSNEKTLNRKS 241
           +KK++ DG S+R  +  R  +  + ++S  KS++E+ A++S R+  K+   KS
Sbjct: 369 KKKKKGDGSSNRSERENRSEKSQKSQKSSRKSVREKKAQRSQRNGRKSKEIKS 421


>tr|Q988B9|Q988B9_RHILO Mlr6805 protein (4-pyridoxolactonase)
           OS=Rhizobium loti GN=mlr6805 PE=4 SV=1
          Length = 268

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 193 LLSSPPHKLGHYFCLERFPVQ--CLFVASATFPRASFLKTLGQGSFEL 330
           L+S+P H +GHY  L  FP +   LF   A + + S L+TL Q +F +
Sbjct: 179 LISTPGHSIGHYSLLVEFPRRKPILFTIDAAYTQKS-LETLCQAAFHI 225


>tr|Q9C7X2|Q9C7X2_ARATH Putative uncharacterized protein F13N6.4
           OS=Arabidopsis thaliana GN=F13N6.4 PE=4 SV=1
          Length = 537

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 472 FPNSLQPVLPIRQKDNLTXXXXXXXXXXXXXXXKQQIEKNAKEIQAVAIQKILG 311
           FP  L P  P ++K+N                 K Q+EK A+E +A AI+KILG
Sbjct: 346 FPRGLPPAPPRKRKENGLEVDQQLKKAEAAQRRKLQVEKAARESEAEAIRKILG 399


>tr|Q8GYE3|Q8GYE3_ARATH Putative uncharacterized protein
           At1g56460/F13N6_4 OS=Arabidopsis thaliana
           GN=At1g56460/F13N6_4 PE=2 SV=1
          Length = 502

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 472 FPNSLQPVLPIRQKDNLTXXXXXXXXXXXXXXXKQQIEKNAKEIQAVAIQKILG 311
           FP  L P  P ++K+N                 K Q+EK A+E +A AI+KILG
Sbjct: 346 FPRGLPPAPPRKRKENGLEVDQQLKKAEAAQRRKLQVEKAARESEAEAIRKILG 399