BP919257 [AcEST]

BP919257
Clone id	YMU001_000123_A06
Library	YMU01
Length	537
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000123_A06.
Accession	BP919257
Tissue type	prothallium
Developmental stage	-
Contig ID	CL3123Contig1
Sequence	CTCTCTCTCTCTCGTTAATGGGGTATAGTCATTCGATTTGGCATGGAAGGAAATAGCAAT AAAGAGGAAGTGAAGGAAGAATTTTTGGCAGGGAAAGGATAGCCTCTCTCTCTCTCTCTC TCTAACCAGCCAACGTGGCCATGTCCACCAAGTGACCGAGTCAATTAATGGCCCTCAGCA AGATCCCATCATTGACACTGGTCAATTGAGATGCAGACAACAGTGTGATGTCCAAGTTGA AGGCAAAAAAGATATCCTGAAGAAGATGAAGCCAACCACCTAGGGGGTCAGAGTCTTAGT CTCGATTATTAATCATGTGTAGGCCTGATATTGACGGCCTCATGAGAAGATTTTGCATTG CCAAATGGCAGCAACATAAACATGGGTAACAAAAAGTTGGAGAGTTGCTGCAGGGTCGTG TGCTGGAGGTCGACAACTTTTACCTATTAGAATGTATTGGGTTGCAAACACCATCTCCAT GGGCTATTTGATAGAGTAGCCCTCCATGTTCTATAGGTATCTCTATTTCTCTCTCTC
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q8RX28
Definition	sp\|Q8RX28\|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana
Align length	36
Score (bit)	30.0
E-value	7.4
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP919257\|Adiantum capillus-veneris mRNA, clone: YMU001_000123_A06. (537 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q8RX28\|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thalia... 30 7.4 >sp\|Q8RX28\|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1 Length = 660 Score = 30.0 bits (66), Expect = 7.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 295 DSDPLGGWLHLLQDIFFAFNLDITLLSASQLTSVND 188 D+D L W H+L + FN D+ LSA ++ND Sbjct: 261 DADYLAAWDHILIPVAREFNPDVIFLSAGFDAAIND 296
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q15MU9
Definition	tr\|Q15MU9\|Q15MU9_PSEA6 Putative uncharacterized protein OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Align length	101
Score (bit)	33.5
E-value	7.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP919257\|Adiantum capillus-veneris mRNA, clone: YMU001_000123_A06. (537 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q15MU9\|Q15MU9_PSEA6 Putative uncharacterized protein OS=Pseud... 33 7.2 >tr\|Q15MU9\|Q15MU9_PSEA6 Putative uncharacterized protein OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=Patl_4290 PE=4 SV=1 Length = 241 Score = 33.5 bits (75), Expect = 7.2 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 9/101 (8%) Frame = -3 Query: 511 EHGGLLYQIAHGDGVCNPIHSNRK--------LSTSSTRPCSNSPTFCYPCLCCCHLAM 356 EHGG + + G+ SN L++S TR + Y C+ Sbjct: 143 EHGGTGFYRHNRSGIERVTKSNEQAYGTEVTGILASSDTREYCTTAHHAYTCIHKIPYKQ 202 Query: 355 QNLLMRP-SISGLHMINNRDDSDPLGGWLHLLQDIFFAFN 236 LL+ P +I +INN+D D+DP+ G L ++F F+ Sbjct: 203 NRLLLYPGNILHSALINNKDIDADPMSG--RLTANMFIKFH 241