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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919259
Clone id YMU001_000123_A08
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGTGCTCATTATCTCCCGCGCAATACACACCTTCCTCTCCTGTCTCTCTCTCTCTCTCTC
TCTCACACACACACACACACACACTCAATGGGGTGCATCAATTTTGCATCCACGGTAGCG
GAAATGGCAGCATTCTTGTGCAGACCCTTTAACTCTATCGTCACAGACGTGGTGGGCTTA
TTCTACGATGCATCGATCTATGAGCGGCGGCAATATCGTTACGTCAAGCCAATTAGGTAC
GACAGACCGTCTTTCTTGTTAGGAGGGTGCTGATGGCATGAACGCATTGTTATTTTGCTA
GTTTGAGGCCATTTTCACTCCTGGACGACTCATTCCAGGATCTCTTGTAACATCTCTGCA
CATGCTCAAGGATATAACACCAGATGCATCCGGTCACTCTCCATGAAAGTGTCCACTACC
TGTTTTTCACTCACACCCCCATTCACACAAA
■■Homology search results ■■ -
sp_hit_id P0C7A6
Definition sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 OS=Danio rerio
Align length 46
Score (bit) 32.0
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919259|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A08.
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containi...    32   1.3  

>sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containing
           protein BTBD11 OS=Danio rerio GN=btbd11 PE=4 SV=1
          Length = 1012

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 280 ERIVILLV*GHFHSWTTHSRISCNISAHAQGYNTRCIRSLSMKVST 417
           ER  ++   G F  W   SR++  +  HA  Y T C+ SL  +V T
Sbjct: 194 ERCGLVFSVGKFFRWMVDSRVAVRVHEHAAIYLTGCMESLFREVFT 239
tr_hit_id B1X3J1
Definition tr|B1X3J1|B1X3J1_PAUCH Putative uncharacterized protein OS=Paulinella chromatophora
Align length 35
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919259|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A08.
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1X3J1|B1X3J1_PAUCH Putative uncharacterized protein OS=Pauli...    35   1.4  

>tr|B1X3J1|B1X3J1_PAUCH Putative uncharacterized protein
           OS=Paulinella chromatophora GN=PCC_0051 PE=4 SV=1
          Length = 303

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +2

Query: 125 WQHSCADPLTLSSQTWWAYSTMHRSMSGGNIVTSS 229
           WQ+  A P T+++ +W +YST  R M GGNI +SS
Sbjct: 220 WQNESALPATVTASSWTSYST--RLMEGGNINSSS 252