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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919260
Clone id YMU001_000123_A09
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGCAGGAATTGTGCAGAGCTGGGGGCAAAGTTAGAGACCAGATAGTATTGGTTTTTCTTT
GATCCAAGAGCCCGTGCAAATTTCATATCACCAAAATTGGCATCAAAGTTGGACATTCGT
GCAGAGGAGATGGGTATGACAGGTGAAGCAAGTTTGCCATGCCCAGGTCATTCGGAGCCT
GTTAATCCCATTTTGGGGAAAATTTGTTTGCATATTCAGAATTATGTGGATGCAGAAGAA
TTTCATATTATGCCACTTGAGGGTTGTGATGTGTTATTGGGTGTTAAAGGTTACATGCTA
TATTGTATACTTACAACAAAAAGATTACCCTTGTACATAGAGGAATGACTCATGTCCTTG
AAGTAAAGCTCAAAGGCGAGTCTGTTCCAGTTGTTTCTGCTTTTGCTATTTCATCTGTAA
TAAAGAATCATCTTTCTGCATACTTGATCTTTGCAAAAGAAGTACCTGA
■■Homology search results ■■ -
sp_hit_id Q84W91
Definition sp|Q84W91|ZFNL1_ARATH Zinc finger CCCH domain-containing protein ZFN-like 1 OS=Arabidopsis thaliana
Align length 60
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919260|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A09.
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q84W91|ZFNL1_ARATH Zinc finger CCCH domain-containing protein...    32   1.8  
sp|Q91VL8|TE2IP_MOUSE Telomeric repeat-binding factor 2-interact...    32   1.8  
sp|Q1B370|PUR7_MYCSS Phosphoribosylaminoimidazole-succinocarboxa...    31   3.1  
sp|A1ULY1|PUR7_MYCSK Phosphoribosylaminoimidazole-succinocarboxa...    31   3.1  
sp|A3Q6D1|PUR7_MYCSJ Phosphoribosylaminoimidazole-succinocarboxa...    31   3.1  
sp|P26591|GLRK_LYMST Glutamate receptor OS=Lymnaea stagnalis PE=...    30   4.0  
sp|Q07E24|MET_MUSPF Hepatocyte growth factor receptor OS=Mustela...    30   6.9  
sp|P97523|MET_RAT Hepatocyte growth factor receptor OS=Rattus no...    29   9.1  
sp|Q2IBD8|MET_PONAB Hepatocyte growth factor receptor OS=Pongo a...    29   9.1  
sp|Q2QLE0|MET_PIG Hepatocyte growth factor receptor OS=Sus scrof...    29   9.1  
sp|Q2QLF1|MET_PANTR Hepatocyte growth factor receptor OS=Pan tro...    29   9.1  
sp|Q07E37|MET_NEONE Hepatocyte growth factor receptor OS=Neofeli...    29   9.1  
sp|P16056|MET_MOUSE Hepatocyte growth factor receptor OS=Mus mus...    29   9.1  
sp|Q2QL89|MET_MICMU Hepatocyte growth factor receptor OS=Microce...    29   9.1  
sp|Q07DY1|MET_HYLLE Hepatocyte growth factor receptor OS=Hylobat...    29   9.1  
sp|P08581|MET_HUMAN Hepatocyte growth factor receptor OS=Homo sa...    29   9.1  
sp|Q2QLA9|MET_HORSE Hepatocyte growth factor receptor OS=Equus c...    29   9.1  
sp|Q2IBF2|MET_GORGO Hepatocyte growth factor receptor OS=Gorilla...    29   9.1  
sp|A0M8S8|MET_FELCA Hepatocyte growth factor receptor OS=Felis s...    29   9.1  
sp|Q2IBG7|MET_EULMM Hepatocyte growth factor receptor OS=Eulemur...    29   9.1  
sp|Q75ZY9|MET_CANFA Hepatocyte growth factor receptor OS=Canis f...    29   9.1  

>sp|Q84W91|ZFNL1_ARATH Zinc finger CCCH domain-containing protein
           ZFN-like 1 OS=Arabidopsis thaliana GN=At2g47850 PE=2
           SV=2
          Length = 468

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 72  PCKFHITKIGIKVGHSCRGDGYDR*SKFAMPRSFGAC*SHFGENLFAYSELCGCRRISYY 251
           PC+F++     K G SC         KF  P++ G   SH   N++ Y    G    SYY
Sbjct: 95  PCQFYLKTGTCKFGASC---------KFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYY 145


>sp|Q91VL8|TE2IP_MOUSE Telomeric repeat-binding factor 2-interacting
           protein 1 OS=Mus musculus GN=Terf2ip PE=1 SV=1
          Length = 393

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +1

Query: 106 KLDIRAEEMGMTGEASLPCPGHS-----EP-VNPILGKICLHIQNYVDAEEFHIM 252
           KLD+ A  +G+T +AS P PG S     EP   P+ G+I      Y DAE+  I+
Sbjct: 93  KLDLEAYRLGLTEQASDPKPGASTEGSTEPEPQPLTGRIA-----YTDAEDVAIL 142


>sp|Q1B370|PUR7_MYCSS
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           OS=Mycobacterium sp. (strain MCS) GN=purC PE=3 SV=1
          Length = 297

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 73  GLLDQRKTNTIWSLTLPPAL 14
           GL+D RKT T+  LTLPP L
Sbjct: 110 GLIDYRKTGTLCGLTLPPGL 129


>sp|A1ULY1|PUR7_MYCSK
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           OS=Mycobacterium sp. (strain KMS) GN=purC PE=3 SV=1
          Length = 297

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 73  GLLDQRKTNTIWSLTLPPAL 14
           GL+D RKT T+  LTLPP L
Sbjct: 110 GLIDYRKTGTLCGLTLPPGL 129


>sp|A3Q6D1|PUR7_MYCSJ
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           OS=Mycobacterium sp. (strain JLS) GN=purC PE=3 SV=1
          Length = 297

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 73  GLLDQRKTNTIWSLTLPPAL 14
           GL+D RKT T+  LTLPP L
Sbjct: 110 GLIDYRKTGTLCGLTLPPGL 129


>sp|P26591|GLRK_LYMST Glutamate receptor OS=Lymnaea stagnalis PE=2
           SV=1
          Length = 917

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 303 LYTYNKKITLVHRGMTHVLEVKLKGES--VPVVSAFAISSVIKNHLS 437
           L  +  +I + +R  +HV   KLK ++  + V  +FA+S+ + +HLS
Sbjct: 38  LTAFRHEIHMFNRAYSHVYRYKLKNDTTILDVTDSFAVSNALCHHLS 84


>sp|Q07E24|MET_MUSPF Hepatocyte growth factor receptor OS=Mustela
           putorius furo GN=MET PE=3 SV=1
          Length = 1382

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
           +DA+ FH   +  C V  G+  YM   L CILT KR
Sbjct: 270 LDAQTFHTRVIRFCSVDSGLHSYMEMPLECILTEKR 305


>sp|P97523|MET_RAT Hepatocyte growth factor receptor OS=Rattus
           norvegicus GN=Met PE=1 SV=1
          Length = 1382

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
           +DA+ FH   +  C V  G+  YM   L CILT KR
Sbjct: 270 LDAQTFHTRIIRFCSVDSGLHSYMEMPLECILTEKR 305


>sp|Q2IBD8|MET_PONAB Hepatocyte growth factor receptor OS=Pongo
           abelii GN=MET PE=3 SV=1
          Length = 1390

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
           +DA+ FH   +  C +  G+  YM   L CILT KR
Sbjct: 269 LDAQTFHTRIIRFCSINSGLHSYMEMPLECILTEKR 304


>sp|Q2QLE0|MET_PIG Hepatocyte growth factor receptor OS=Sus scrofa
           GN=MET PE=2 SV=1
          Length = 1381

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
           +DA+ FH   +  C V  G+  YM   L CILT KR
Sbjct: 270 LDAQTFHTRIIRFCSVDSGLHSYMEMPLECILTEKR 305
tr_hit_id Q0W3N0
Definition tr|Q0W3N0|Q0W3N0_UNCMA Predicted signal transduction protein OS=Uncultured methanogenic archaeon RC-I
Align length 82
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919260|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A09.
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0W3N0|Q0W3N0_UNCMA Predicted signal transduction protein OS=...    34   4.2  
tr|A7QWB9|A7QWB9_VITVI Chromosome chr6 scaffold_202, whole genom...    33   5.5  
tr|A0DL05|A0DL05_PARTE Chromosome undetermined scaffold_55, whol...    33   7.2  
tr|A0BXZ0|A0BXZ0_PARTE Chromosome undetermined scaffold_135, who...    33   9.4  

>tr|Q0W3N0|Q0W3N0_UNCMA Predicted signal transduction protein
           OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_12260
           PE=4 SV=1
          Length = 610

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 61  DPRARANFISPKLASKLDIR-AEEMGMTGEASLPCPGHSEPVNPILGKICLHIQNYVDAE 237
           D   R  +ISP++   +    A+ +G T E  L  PGH+  +   + +I    ++Y   +
Sbjct: 248 DSAGRFTYISPRIKDMMGYEPADFIGKTIEGFL-APGHARDIIDNVAQIFADPKHY-SLQ 305

Query: 238 EFHIMPLEGCDVLLGVKGYMLY 303
           E H++  +G +++L   G +LY
Sbjct: 306 ETHVLHRDGHEIILEANGTVLY 327


>tr|A7QWB9|A7QWB9_VITVI Chromosome chr6 scaffold_202, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00008595001
           PE=4 SV=1
          Length = 150

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +1

Query: 61  DPRARANFISPKLASKLDIRAEE-----MGMTGEASLPCPGHSEPVNPILGKICLHIQNY 225
           D  +  NF+  K+A  + +++E      M ++    L  P     V        L +Q  
Sbjct: 73  DSGSTHNFLHHKIAKIIGLKSERSCLFSMVVSNGERLSSPRRCNEVK-------LSLQGI 125

Query: 226 VDAEEFHIMPLEGCDVLLGVK 288
               +F ++PLEGCDV+LGV+
Sbjct: 126 PIKVDFFLLPLEGCDVVLGVQ 146


>tr|A0DL05|A0DL05_PARTE Chromosome undetermined scaffold_55, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00018039001 PE=4 SV=1
          Length = 496

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 270 CVIGC*RL-HAILYTYNKKITLVHRGMTHVLEVKLKGESVPVVSAFAISSVIKNHLSAYL 446
           C++G  +L H +LY+YN+++ L  +  T +L+   K      VS   +  +++ H S Y 
Sbjct: 221 CLMGIRQLNHFLLYSYNQEVQLFTQAYTFLLKKANKKHYKGRVSPNELIKILEKHFSIYE 280

Query: 447 IFAKEV 464
           +  KE+
Sbjct: 281 MHDKEL 286


>tr|A0BXZ0|A0BXZ0_PARTE Chromosome undetermined scaffold_135, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00033260001 PE=4 SV=1
          Length = 738

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +3

Query: 306 YTYNKKITLVHRGMTH--VLEVKLKGESVPVVSAFAISSVIKNH 431
           Y Y + + ++HR +T   +L  ++KG  +  +S F++SS++KN+
Sbjct: 102 YQYLRSLGIIHRNLTPLTILVQQIKGRIIIKISDFSVSSLLKNN 145