BP919266
Clone id YMU001_000123_B03
Library
Length 333
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATGTTGAAGTTCAATGGCGAAGGAACAAGAGGTTTCCCTATGGATGGTGGTATGGAGTAG
TCGGGCATCTAGAAACATGTGACAAAGATAGCCGACATTGCTGCTGTCACNTTGGATGAC
ATGGTTTGGTTGGAGTTCAATCAATACGCTCCAGGATCTCGCTGGAGGAGAACAGGGATC
TACCGAAAGACACATACTGAGAAAGGTGATGATGCCGAAGGTTTCTATGCTGGCATCAGG
AAGCTGTCTTCTGAAGAAGCATCTGCTTGGATGCGGCTGTGACCAAAGGAACCCTTGGAG
TAGGGGTTGTTGATTTTGGCATTTGTCATCACT
■■Homology search results ■■ -
sp_hit_id Q6NLB1
Definition sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis thaliana
Align length 54
Score (bit) 64.7
E-value 1.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919266|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B03.
(333 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis tha... 65 1e-22
sp|Q8RY82|FB121_ARATH F-box protein At2g32560 OS=Arabidopsis tha... 62 5e-22
sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis tha... 58 1e-19
sp|Q54UL8|MPS1_DICDI Probable serine/threonine-protein kinase mp... 29 6.4
sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20 ... 29 6.4

>sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis
thaliana GN=At2g26850 PE=2 SV=1
Length = 371

Score = 64.7 bits (156), Expect(2) = 1e-22
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +1

Query: 118 DMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKLS-SEEASAWMR 276
+M+ LEFNQY GSRWR+T I R+ H EKG++ +GFY GIRK++ E+ W R
Sbjct: 310 EMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKEDIEMWKR 363



Score = 61.6 bits (148), Expect(2) = 1e-22
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCD 83
+E+QWRRNK FPYGWWY VVGH+E+CD
Sbjct: 272 IEIQWRRNKEFPYGWWYSVVGHMESCD 298


>sp|Q8RY82|FB121_ARATH F-box protein At2g32560 OS=Arabidopsis
thaliana GN=At2g32560 PE=2 SV=1
Length = 371

Score = 62.0 bits (149), Expect(2) = 5e-22
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCDKD 89
+E+QWRRNK FPYGWWYG+V HLE+CD D
Sbjct: 273 IEIQWRRNKEFPYGWWYGLVRHLESCDGD 301



Score = 62.0 bits (149), Expect(2) = 5e-22
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +1

Query: 112 LDDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKLS-SEEASAWMR 276
L + V LEFNQY GSRWRRT I R H E+G++ +GFY GIRKL+ EE + W R
Sbjct: 309 LSETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFYGGIRKLNCKEEIAMWKR 363


>sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis
thaliana GN=At2g41170 PE=2 SV=1
Length = 371

Score = 58.2 bits (139), Expect(2) = 1e-19
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1

Query: 115 DDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAW 270
D+ V +EF Q+ P S WRRT I RK H E G++ GFY G++KL + EE S W
Sbjct: 309 DENVVMEFRQFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLGTEEEISTW 361



Score = 57.8 bits (138), Expect(2) = 1e-19
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3

Query: 6 EVQWRRNKRFPYGWWYGVVGHLETCD 83
E+QWRR K FPYGWW+G+VGHL+ CD
Sbjct: 274 EIQWRRTKEFPYGWWFGIVGHLQNCD 299


>sp|Q54UL8|MPS1_DICDI Probable serine/threonine-protein kinase mps1
OS=Dictyostelium discoideum GN=mps1 PE=3 SV=1
Length = 983

Score = 29.3 bits (64), Expect = 6.4
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Frame = -1

Query: 318 QNQQPLLQGFLWSQP--HPSRCFFRRQLPDASIETFGIITFLSMCLSVDPCSPPARSWSV 145
Q QQ +Q QP HP R + P + T + S SPP S S
Sbjct: 504 QQQQQYIQQQQQQQPKIHPQRFSLQNNTPTTTTTTTAATNVQNPSSSSSYISPPLSSQSS 563

Query: 144 LIELQPNHVIQXDSSN 97
++ Q H IQ +N
Sbjct: 564 ELQHQRRHSIQAQRAN 579


>sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20
OS=Danio rerio GN=ddx20 PE=2 SV=1
Length = 761

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3

Query: 325 QMPKSTTPTPRVPLVTAASKQMLLQ-KTAS*CQHRNLRHHH 206
++ KST P+ RVP SKQ Q ++ H NL H H
Sbjct: 650 ELAKSTLPSTRVPQQATRSKQKPCQPQSQDTAHHHNLPHKH 690


tr_hit_id A9U4Y9
Definition tr|A9U4Y9|A9U4Y9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 54
Score (bit) 72.8
E-value 2.0e-25
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919266|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B03.
(333 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U4Y9|A9U4Y9_PHYPA Predicted protein OS=Physcomitrella paten... 73 2e-25
tr|A9TEN5|A9TEN5_PHYPA Predicted protein OS=Physcomitrella paten... 75 7e-25
tr|B8LR71|B8LR71_PICSI Putative uncharacterized protein OS=Picea... 70 9e-25
tr|A7PFU7|A7PFU7_VITVI Chromosome chr6 scaffold_15, whole genome... 72 2e-24
tr|A9TAK6|A9TAK6_PHYPA Predicted protein OS=Physcomitrella paten... 73 3e-24
tr|Q9LG67|Q9LG67_ORYSJ cDNA clone:J013001A01, full insert sequen... 69 7e-24
tr|Q5VR67|Q5VR67_ORYSJ cDNA clone:001-112-H09, full insert seque... 74 2e-23
tr|B8AAY2|B8AAY2_ORYSI Putative uncharacterized protein OS=Oryza... 74 2e-23
tr|A2ZYT1|A2ZYT1_ORYSJ Putative uncharacterized protein OS=Oryza... 73 2e-23
tr|B6U2H4|B6U2H4_MAIZE Cyclin-like F-box OS=Zea mays PE=2 SV=1 67 4e-23
tr|B7ZZX1|B7ZZX1_MAIZE Putative uncharacterized protein OS=Zea m... 74 5e-23
tr|B6SWR5|B6SWR5_MAIZE Cyclin-like F-box OS=Zea mays PE=2 SV=1 74 5e-23
tr|A2ZRV6|A2ZRV6_ORYSJ Putative uncharacterized protein OS=Oryza... 65 8e-23
tr|B8ACK5|B8ACK5_ORYSI Putative uncharacterized protein OS=Oryza... 65 8e-23
tr|A7PT81|A7PT81_VITVI Chromosome chr8 scaffold_29, whole genome... 70 4e-22
tr|A5BWU2|A5BWU2_VITVI Putative uncharacterized protein OS=Vitis... 70 4e-22
tr|Q2HSY4|Q2HSY4_MEDTR Cyclin-like F-box OS=Medicago truncatula ... 66 5e-22
tr|A5B633|A5B633_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-19
tr|Q2HSY2|Q2HSY2_MEDTR Cyclin-like F-box OS=Medicago truncatula ... 52 9e-12
tr|Q2HSX6|Q2HSX6_MEDTR Cyclin-like F-box OS=Medicago truncatula ... 49 1e-10
tr|Q2HSX7|Q2HSX7_MEDTR Cyclin-like F-box OS=Medicago truncatula ... 37 0.65
tr|O80894|O80894_ARATH Putative uncharacterized protein At2g3257... 35 1.4
tr|Q2HSX9|Q2HSX9_MEDTR Cyclin-like F-box OS=Medicago truncatula ... 35 2.5
tr|A3V1T2|A3V1T2_9RHOB Xanthine dehydrogenase, B subunit OS=Lokt... 34 4.2
tr|A7E6M5|A7E6M5_SCLS1 Putative uncharacterized protein OS=Scler... 33 5.5
tr|Q1NVP6|Q1NVP6_9DELT Putative uncharacterized protein OS=delta... 33 9.4
tr|A3Z315|A3Z315_9SYNE Putative helicase (Fragment) OS=Synechoco... 33 9.4

>tr|A9U4Y9|A9U4Y9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_102204 PE=4 SV=1
Length = 307

Score = 72.8 bits (177), Expect(2) = 2e-25
Identities = 33/54 (61%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = +1

Query: 118 DMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAWMR 276
+ VWLEF+QY GSRWRR I RK+H E+G++AEGFY GIRKL + EE + W R
Sbjct: 246 ETVWLEFSQYTLGSRWRRAAINRKSHREEGNEAEGFYGGIRKLRTKEEINIWKR 299



Score = 65.9 bits (159), Expect(2) = 2e-25
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCDKDSR 95
VEVQWRRNK FPYGWWYGVVGH E CD +SR
Sbjct: 208 VEVQWRRNKEFPYGWWYGVVGHSEACDGNSR 238


>tr|A9TEN5|A9TEN5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_144525 PE=4 SV=1
Length = 322

Score = 74.7 bits (182), Expect(2) = 7e-25
Identities = 33/48 (68%), Positives = 38/48 (79%)
Frame = +1

Query: 118 DMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKLSSEEA 261
D VWLEFNQY GSRWRR I RK+H E+G++ EGFY GIRKL+S EA
Sbjct: 261 DTVWLEFNQYMVGSRWRRAAINRKSHREEGNEEEGFYGGIRKLTSREA 308



Score = 62.4 bits (150), Expect(2) = 7e-25
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCDKDSR 95
VEVQWRRNK FPYGWWYGVVGH E C+ ++R
Sbjct: 223 VEVQWRRNKDFPYGWWYGVVGHSEACEGNTR 253


>tr|B8LR71|B8LR71_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 395

Score = 69.7 bits (169), Expect(2) = 9e-25
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +1

Query: 112 LDDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKLSSEE 258
LDD V LEFNQY GSRWRR I R H E+G++AEGFY GIRKL ++E
Sbjct: 332 LDDTVILEFNQYISGSRWRRAAINRNDHHEEGNEAEGFYGGIRKLQTKE 380



Score = 67.0 bits (162), Expect(2) = 9e-25
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCDKDSR 95
VE+QWRRNK FPYGWWYGVVGH + CD+DSR
Sbjct: 296 VEIQWRRNKEFPYGWWYGVVGHSDYCDRDSR 326


>tr|A7PFU7|A7PFU7_VITVI Chromosome chr6 scaffold_15, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00017252001
PE=4 SV=1
Length = 311

Score = 71.6 bits (174), Expect(2) = 2e-24
Identities = 33/52 (63%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +1

Query: 118 DMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAW 270
+ V LEFNQY PGSRWRRT I RK H E+G++A+GFY GIRKL ++E S W
Sbjct: 250 ETVVLEFNQYTPGSRWRRTSINRKDHREEGNEADGFYGGIRKLCRNDEISVW 301



Score = 64.3 bits (155), Expect(2) = 2e-24
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCD 83
+E+QWRRNK FPYGWWYG+VGHLE+CD
Sbjct: 212 IEIQWRRNKEFPYGWWYGIVGHLESCD 238


>tr|A9TAK6|A9TAK6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_168907 PE=4 SV=1
Length = 308

Score = 72.8 bits (177), Expect(2) = 3e-24
Identities = 33/54 (61%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Frame = +1

Query: 118 DMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAWMR 276
+ +WLEFNQYA GSRWRR I RK+H E+G +AEGFY GIRKL + EE W +
Sbjct: 247 ETLWLEFNQYAVGSRWRRAPINRKSHEEEGSEAEGFYGGIRKLKTKEEIEIWKK 300



Score = 62.4 bits (150), Expect(2) = 3e-24
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCDKDSR 95
VEVQWRRNK FPYGWWYGVVGH E C+ SR
Sbjct: 209 VEVQWRRNKDFPYGWWYGVVGHSEGCEGSSR 239


>tr|Q9LG67|Q9LG67_ORYSJ cDNA clone:J013001A01, full insert sequence
OS=Oryza sativa subsp. japonica GN=Os01g0281000 PE=2
SV=2
Length = 415

Score = 68.9 bits (167), Expect(2) = 7e-24
Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +1

Query: 112 LDDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAW 270
L D V LEFNQY PGSRWR+ + RK H E+G++ +GFY GIRKL S +E S W
Sbjct: 352 LSDTVVLEFNQYTPGSRWRQALVNRKDHREEGNEGDGFYGGIRKLRSKDEISKW 405



Score = 64.7 bits (156), Expect(2) = 7e-24
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCD 83
+E+QWRRNK FPYGWWYGVVGHLE+CD
Sbjct: 316 IEIQWRRNKEFPYGWWYGVVGHLESCD 342


>tr|Q5VR67|Q5VR67_ORYSJ cDNA clone:001-112-H09, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0702B09.3 PE=2 SV=1
Length = 427

Score = 73.6 bits (179), Expect(2) = 2e-23
Identities = 34/55 (61%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +1

Query: 115 DDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAWMR 276
DDMV LEF YA GSRWR+T + RK H EKGD+ +GFY GIRKL +S+E S W +
Sbjct: 365 DDMVVLEFKHYAAGSRWRQTTVSRKDHREKGDETDGFYGGIRKLQTSDEISTWRK 419



Score = 58.9 bits (141), Expect(2) = 2e-23
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +3

Query: 6 EVQWRRNKRFPYGWWYGVVGHLETCD 83
E+QWR+NK FPYGWWYGVVGH ETC+
Sbjct: 329 EIQWRKNKDFPYGWWYGVVGHQETCN 354


>tr|B8AAY2|B8AAY2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04131 PE=4 SV=1
Length = 427

Score = 73.6 bits (179), Expect(2) = 2e-23
Identities = 34/55 (61%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +1

Query: 115 DDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAWMR 276
DDMV LEF YA GSRWR+T + RK H EKGD+ +GFY GIRKL +S+E S W +
Sbjct: 365 DDMVVLEFKHYAAGSRWRQTTVSRKDHREKGDETDGFYGGIRKLQTSDEISTWRK 419



Score = 58.9 bits (141), Expect(2) = 2e-23
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +3

Query: 6 EVQWRRNKRFPYGWWYGVVGHLETCD 83
E+QWR+NK FPYGWWYGVVGH ETC+
Sbjct: 329 EIQWRKNKDFPYGWWYGVVGHQETCN 354


>tr|A2ZYT1|A2ZYT1_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_003703 PE=4 SV=1
Length = 751

Score = 73.2 bits (178), Expect(2) = 2e-23
Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = +1

Query: 115 DDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAW 270
DDMV LEF YA GSRWR+T + RK H EKGD+ +GFY GIRKL +S+E S W
Sbjct: 319 DDMVVLEFKHYAAGSRWRQTTVSRKDHREKGDETDGFYGGIRKLQTSDEISTW 371



Score = 58.9 bits (141), Expect(2) = 2e-23
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +3

Query: 6 EVQWRRNKRFPYGWWYGVVGHLETCD 83
E+QWR+NK FPYGWWYGVVGH ETC+
Sbjct: 283 EIQWRKNKDFPYGWWYGVVGHQETCN 308


>tr|B6U2H4|B6U2H4_MAIZE Cyclin-like F-box OS=Zea mays PE=2 SV=1
Length = 407

Score = 66.6 bits (161), Expect(2) = 4e-23
Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +1

Query: 112 LDDMVWLEFNQYAPGSRWRRTGIYRKTHTEKGDDAEGFYAGIRKL-SSEEASAW 270
L D V LEFNQY PGSRWR+ + RK H E+G++ +GFY GIRKL +++ S W
Sbjct: 344 LSDTVVLEFNQYTPGSRWRQALVKRKEHREEGNEGDGFYGGIRKLRGNDDISKW 397



Score = 64.7 bits (156), Expect(2) = 4e-23
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = +3

Query: 3 VEVQWRRNKRFPYGWWYGVVGHLETCD 83
+E+QWRRNK FPYGWWYGVVGHLE+CD
Sbjct: 308 IEIQWRRNKEFPYGWWYGVVGHLESCD 334