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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919267
Clone id YMU001_000123_B04
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTCACTGTTTGCACGAAGTTTCCTCCGTGGTTTGCTCGGCTCATGAGTTGCCAAACCTTT
AGTCCTTCTCTGCAGATTGCCGAGTTTCCAAGCCGTTTCCAAGATGAGCACGACTTCGCG
TCTCTCGTTCAAAAGATTCTACAGGCGTTCCCCTCAGCACATCAGTGTTCCGTATTGTGT
CACGCGAGATACTGACGCACTGCTGATATCTCCTCAACCTGATCTACTTCCTCTTGCTCT
GACAGCCTCTTCGATTGCTGTATCTGATACTTCATTCAACGAAACTTGTGAACCATCGTC
GTTACGCTCACTTAACCCTTTGCTGGCCTCACATATTTCCTTTAAAGCTCTACTAAAATC
TGTGATTGTGTTCTTAACTTGTGATTTAGCAAGCAGACTCTTCTTTGTCTCCGAGGTGAA
TGATTTCACATCTACTGACTGAACAAACCCTATCTGCTTGGTGCCAAAAAAATACACAAA
TACTTTGCGCCGATCTGCAGGATAGCCAAACTCATCTGGATCACTCACCCG
■■Homology search results ■■ -
sp_hit_id Q98PU5
Definition sp|Q98PU5|Y624_MYCPU UPF0082 protein MYPU_6240 OS=Mycoplasma pulmonis
Align length 115
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919267|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B04.
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98PU5|Y624_MYCPU UPF0082 protein MYPU_6240 OS=Mycoplasma pul...    32   1.9  
sp|Q9VZS5|RL28_DROME 60S ribosomal protein L28 OS=Drosophila mel...    31   3.3  
sp|Q5PAY0|PNP_ANAMM Polyribonucleotide nucleotidyltransferase OS...    31   3.3  
sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1        31   4.2  
sp|Q03156|ALBU2_SALSA Serum albumin 2 OS=Salmo salar GN=alb2 PE=...    31   4.3  
sp|Q8N103|TAGAP_HUMAN T-cell activation Rho GTPase-activating pr...    30   7.2  

>sp|Q98PU5|Y624_MYCPU UPF0082 protein MYPU_6240 OS=Mycoplasma
           pulmonis GN=MYPU_6240 PE=3 SV=1
          Length = 241

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
 Frame = +2

Query: 59  LVLLCRLPSFQAVSKMSTTSRLSFKRFYRRSPQHISVPYCVTR----DTDALLISPQPDL 226
           ++++C   +F   +++S+  +  F +   +  +  S+PY   +    + D  LIS +  +
Sbjct: 98  ILVICLSDNF---NRLSSNIKSYFNKAGGQLSKQGSIPYVYQQKGLIEIDKKLIS-EDKI 153

Query: 227 LPLALTASS--IAVSDTSFNETCEPSSLRSLNPLLASHISFKALLKSVIVFLTCD 385
             +AL A +  I   D  ++ TCEPSS   ++  +     F   L   + ++  D
Sbjct: 154 TEIALEAGAEDIQAEDNYYSITCEPSSFNQVSEFIEKATGFSEFLTREVSYIASD 208


>sp|Q9VZS5|RL28_DROME 60S ribosomal protein L28 OS=Drosophila
           melanogaster GN=RpL28 PE=1 SV=1
          Length = 144

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -1

Query: 459 KQIGFVQSVDVKSFTSETKKSLLAKSQVKNTI-TDFS----RALKEICEASKGLSERND 298
           K +G V + D K FT+  KK   A+   KNT+  DF     R+LK++     G   R D
Sbjct: 51  KTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKD 109


>sp|Q5PAY0|PNP_ANAMM Polyribonucleotide nucleotidyltransferase
           OS=Anaplasma marginale (strain St. Maries) GN=pnp PE=3
           SV=1
          Length = 805

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = -1

Query: 429 VKSFTSETKKSLLAKSQVKNTITDFSRALKEICEASKGLSERNDDGSQVSLNEVSDTAIE 250
           V+      +  ++ K+++KN I    + ++EICE +    E + DG+ V +  VS  A+E
Sbjct: 553 VRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT-VMIYAVSRDAVE 611

Query: 249 E 247
           E
Sbjct: 612 E 612


>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
          Length = 5376

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 149 SPQHISVPYCVTRDTDALLISPQPDLLPLALTASSIAVSDTSFNETCEP 295
           SP+  SVP   T  T+   +SP+   LP  +   S  V++ S  ET  P
Sbjct: 796 SPEETSVPTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVP 844



 Score = 30.8 bits (68), Expect = 4.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 149  SPQHISVPYCVTRDTDALLISPQPDLLPLALTASSIAVSDTSFNETCEP 295
            SP+  SVP   T  T+   +SP+   LP  +   S  V++ S  ET  P
Sbjct: 875  SPEETSVPTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVP 923


>sp|Q03156|ALBU2_SALSA Serum albumin 2 OS=Salmo salar GN=alb2 PE=2
           SV=1
          Length = 608

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = -1

Query: 504 YPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSRALKEICEA 325
           +P   ++V + F    +   +Q  D++   +E  K+ LA S +   ITD +   K++C A
Sbjct: 358 HPESSQQVILRFAKEAEQALLQCCDMEDH-AECVKTALAGSDIDKKITDETDYYKKMCAA 416

Query: 324 SKGLSERNDDGSQV 283
              +S+ N + S +
Sbjct: 417 EAAVSDDNFEKSMM 430


>sp|Q8N103|TAGAP_HUMAN T-cell activation Rho GTPase-activating
           protein OS=Homo sapiens GN=TAGAP PE=2 SV=1
          Length = 731

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +2

Query: 194 DALLISPQPDLLPLALTASSIAVSDTSFNETCEPSSLRSLNPLLASHISFKALLKSVIVF 373
           DA  +SP+P +  +A   SS+A  D  ++E   PSS       L S ++ + L KS   F
Sbjct: 349 DAREVSPEPIVSTVARLKSSLAQPDRRYSEPSMPSS----QECLESRVTNQTLTKSEGDF 404

Query: 374 LTCDLASRL 400
               + SRL
Sbjct: 405 PVPRVGSRL 413
tr_hit_id A7PU75
Definition tr|A7PU75|A7PU75_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence OS=Vitis vinifera
Align length 93
Score (bit) 79.0
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919267|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B04.
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PU75|A7PU75_VITVI Chromosome chr7 scaffold_31, whole genome...    79   1e-13
tr|Q8H3E3|Q8H3E3_ORYSJ Transcription factor (PWWP domain protein...    72   1e-11
tr|Q0D412|Q0D412_ORYSJ Os07g0655500 protein OS=Oryza sativa subs...    72   2e-11
tr|B8B5E0|B8B5E0_ORYSI Putative uncharacterized protein OS=Oryza...    72   2e-11
tr|A3BMY9|A3BMY9_ORYSJ Putative uncharacterized protein OS=Oryza...    72   2e-11
tr|Q9LYB5|Q9LYB5_ARATH Putative uncharacterized protein T20O10_1...    69   1e-10
tr|A7P2V8|A7P2V8_VITVI Chromosome chr1 scaffold_5, whole genome ...    69   2e-10
tr|Q8GYT7|Q8GYT7_ARATH Putative uncharacterized protein At2g4816...    67   7e-10
tr|Q10L59|Q10L59_ORYSJ PWWP domain containing protein, expressed...    67   7e-10
tr|B8APU6|B8APU6_ORYSI Putative uncharacterized protein OS=Oryza...    67   7e-10
tr|Q9XER9|Q9XER9_ARATH Putative transcription factor OS=Arabidop...    66   1e-09
tr|Q9LEY4|Q9LEY4_ARATH Putative uncharacterized protein T22D6_17...    64   4e-09
tr|Q60D80|Q60D80_BRAOL Putative PWWP domain-containing protein (...    63   1e-08
tr|Q6Z1Z8|Q6Z1Z8_ORYSJ Os08g0100500 protein OS=Oryza sativa subs...    50   9e-05
tr|B8B9X3|B8B9X3_ORYSI Putative uncharacterized protein OS=Oryza...    50   9e-05
tr|A3BNS1|A3BNS1_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.13 
tr|Q7SAN3|Q7SAN3_NEUCR Putative uncharacterized protein OS=Neuro...    36   1.1  
tr|A9SG87|A9SG87_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|Q6MFR8|Q6MFR8_NEUCR Adenylyl cyclase-associated protein OS=Ne...    35   3.2  
tr|Q0DRT0|Q0DRT0_ORYSJ Os03g0358000 protein OS=Oryza sativa subs...    34   4.1  
tr|A9RIA7|A9RIA7_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|Q00YT5|Q00YT5_OSTTA Kinesin, putative (ISS) OS=Ostreococcus t...    34   5.3  
tr|B6BNY0|B6BNY0_9PROT Methyl-accepting chemotaxis sensory trans...    34   5.4  
tr|Q0DRT1|Q0DRT1_ORYSJ Os03g0357800 protein OS=Oryza sativa subs...    34   5.4  
tr|Q23T77|Q23T77_TETTH Putative uncharacterized protein OS=Tetra...    34   5.4  
tr|B4U5B6|B4U5B6_STREM Putative permease OS=Streptococcus equi s...    33   7.0  
tr|B6LCE6|B6LCE6_BRAFL Putative uncharacterized protein OS=Branc...    33   9.0  
tr|A7Q244|A7Q244_VITVI Chromosome chr13 scaffold_45, whole genom...    33   9.2  
tr|B4K805|B4K805_DROMO GI24210 OS=Drosophila mojavensis GN=GI242...    33   9.2  

>tr|A7PU75|A7PU75_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023685001
           PE=4 SV=1
          Length = 1131

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 44/93 (47%), Positives = 60/93 (64%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           VS+P+++GY AD RKV VYFFGTKQI F    DV+ FT E K+SLL K Q K    DF R
Sbjct: 43  VSEPEKWGYSADWRKVLVYFFGTKQIAFCNPADVEEFTEEKKESLLTKRQGKG--ADFVR 100

Query: 348 ALKEICEASKGLSERNDDGSQVSLNEVSDTAIE 250
           A++EI ++ + L +++      S N+V+ T  E
Sbjct: 101 AVQEIVDSYEELKKQDQVDDFNSANDVAVTNSE 133


>tr|Q8H3E3|Q8H3E3_ORYSJ Transcription factor (PWWP domain
           protein)-like protein OS=Oryza sativa subsp. japonica
           GN=P0018C07.118 PE=4 SV=1
          Length = 1449

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 38/87 (43%), Positives = 55/87 (63%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           VS+P+++G  + ++K+ VYF+GTKQI F    D+++FT E +KSLLAK   K    DF R
Sbjct: 43  VSEPEKWGLSSAKKKLLVYFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKG--ADFVR 100

Query: 348 ALKEICEASKGLSERNDDGSQVSLNEV 268
           A+KEI E    L   N++ S  S  +V
Sbjct: 101 AVKEIVEIYDSLKNENNNKSDTSGTDV 127


>tr|Q0D412|Q0D412_ORYSJ Os07g0655500 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0655500 PE=4 SV=1
          Length = 1447

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 37/87 (42%), Positives = 55/87 (63%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           +S+P+++G  + ++K+ VYF+GTKQI F    D+++FT E +KSLLAK   K    DF R
Sbjct: 43  ISEPEKWGLSSAKKKLLVYFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKG--ADFVR 100

Query: 348 ALKEICEASKGLSERNDDGSQVSLNEV 268
           A+KEI E    L   N++ S  S  +V
Sbjct: 101 AVKEIVEIYDSLKNENNNKSDTSGTDV 127


>tr|B8B5E0|B8B5E0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27156 PE=4 SV=1
          Length = 1484

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 37/87 (42%), Positives = 55/87 (63%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           +S+P+++G  + ++K+ VYF+GTKQI F    D+++FT E +KSLLAK   K    DF R
Sbjct: 50  ISEPEKWGLSSAKKKLLVYFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKG--ADFVR 107

Query: 348 ALKEICEASKGLSERNDDGSQVSLNEV 268
           A+KEI E    L   N++ S  S  +V
Sbjct: 108 AVKEIVEIYDSLKNENNNKSDTSGTDV 134


>tr|A3BMY9|A3BMY9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024411 PE=4 SV=1
          Length = 1527

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 37/87 (42%), Positives = 55/87 (63%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           +S+P+++G  + ++K+ VYF+GTKQI F    D+++FT E +KSLLAK   K    DF R
Sbjct: 68  ISEPEKWGLSSAKKKLLVYFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKG--ADFVR 125

Query: 348 ALKEICEASKGLSERNDDGSQVSLNEV 268
           A+KEI E    L   N++ S  S  +V
Sbjct: 126 AVKEIVEIYDSLKNENNNKSDTSGTDV 152


>tr|Q9LYB5|Q9LYB5_ARATH Putative uncharacterized protein T20O10_170
           OS=Arabidopsis thaliana GN=T20O10_170 PE=4 SV=1
          Length = 1261

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 35/76 (46%), Positives = 53/76 (69%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           V +P+++G+ AD +KV V+FFGT+QI F    DV+SFT E K+SLL +   K   +DF R
Sbjct: 42  VDEPEKWGHSADSKKVTVHFFGTQQIAFCNHGDVESFTEEKKQSLLTRRHAKG--SDFVR 99

Query: 348 ALKEICEASKGLSERN 301
           A+KEI E+ + L +++
Sbjct: 100 AVKEITESYEKLKQQD 115


>tr|A7P2V8|A7P2V8_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030203001
           PE=4 SV=1
          Length = 1395

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 33/82 (40%), Positives = 55/82 (67%)
 Frame = -1

Query: 531 RVSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFS 352
           ++  P+++    D +K FV FFGT++I FV   D+++FTSE K  L A+ + K T+  F+
Sbjct: 37  KIGKPEDWDRTPDPKKYFVQFFGTEEIAFVAPGDIEAFTSEVKNKLSARCRGK-TVKFFA 95

Query: 351 RALKEICEASKGLSERNDDGSQ 286
           +A+KEIC+A + L ++N  GS+
Sbjct: 96  QAVKEICDAYEELQQKNTSGSR 117


>tr|Q8GYT7|Q8GYT7_ARATH Putative uncharacterized protein At2g48160
           OS=Arabidopsis thaliana GN=At2g48160 PE=2 SV=1
          Length = 1366

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 36/86 (41%), Positives = 53/86 (61%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           VS+P+++    D +KVFV+FFGT+QI F    DV++FT E K+SLL +   K   +DF R
Sbjct: 42  VSEPEKWDASPDSKKVFVHFFGTQQIAFCNPGDVEAFTEERKQSLLTRRHAKG--SDFVR 99

Query: 348 ALKEICEASKGLSERNDDGSQVSLNE 271
           A+KEI E+ + L ++       S  E
Sbjct: 100 AVKEIIESYEKLKQQERASDPKSAEE 125


>tr|Q10L59|Q10L59_ORYSJ PWWP domain containing protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g24339 PE=4
           SV=1
          Length = 1493

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           +S+P+++G  + ++K+ VYF+GTKQI F    D+++FT E ++SLLAK Q K   +DF R
Sbjct: 49  ISEPEQWGQTSVKKKILVYFYGTKQIAFCNYADLEAFTEEKRRSLLAKRQGKG--SDFLR 106

Query: 348 ALKEICEASKGLSE 307
           A+ EI +    L E
Sbjct: 107 AVDEIIDVYDSLKE 120


>tr|B8APU6|B8APU6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11635 PE=4 SV=1
          Length = 1472

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 528 VSDPDEFGYPADRRKVFVYFFGTKQIGFVQSVDVKSFTSETKKSLLAKSQVKNTITDFSR 349
           +S+P+++G  + ++K+ VYF+GTKQI F    D+++FT E ++SLLAK Q K   +DF R
Sbjct: 47  ISEPEQWGQTSVKKKILVYFYGTKQIAFCNYADLEAFTEEKRRSLLAKRQGKG--SDFVR 104

Query: 348 ALKEICEASKGLSE 307
           A+ EI +    L E
Sbjct: 105 AVDEIIDVYDSLKE 118