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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919271
Clone id YMU001_000123_B08
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAAGTTAAGCTTTCTTGCCTGCTTTGGGACATACAATTTTTTCTCAGTCCTATTTGTAG
AAGATTCACAACTAATAGTATCTGCCTTGAGCTCCGTGTCCAAAGTGTCTATGCTCGCCC
ATTGCAGACTGTTTAACATGTGTTTCCTGCTGCCTCCCAAGCTTTTGATTATGAGGCCTT
TCCTCTTTATCCTTCACCACCTTCGCTTCAACTGCAAAGTAAGGCACAGAAGTCTCGGCT
CTAACCTCAACTTGTGATCTGTCCCCACTCAGCACACTTCCCTCTCCTGAGGCTAAGCTT
GCTGCAGATTCATGAAGCTCTACTTTATGCTGCTTGGAAATCCTCAAGCTACGAGATTTG
ACCTCCCTTTAGTTCTTTTTTGACTCGGTAGCATAAGGTGCTGAAGTCATAGCTGCAGGA
TTCTCTAAGTCCTCTGCCACAGACTTTTCGTCTTTAGAGTAGAAACGCTGGCCATGGTGA
TTGTTCACTTTCACTCCTTCATATTCTTGCTCTCGTTGTTGCTGACGATGCTGG
■■Homology search results ■■ -
sp_hit_id Q8N4U5
Definition sp|Q8N4U5|T11L2_HUMAN T-complex protein 11-like protein 2 OS=Homo sapiens
Align length 38
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919271|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B08.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N4U5|T11L2_HUMAN T-complex protein 11-like protein 2 OS=Hom...    31   4.3  
sp|P18773|EST_ACILW Esterase OS=Acinetobacter lwoffii GN=est PE=...    30   9.5  

>sp|Q8N4U5|T11L2_HUMAN T-complex protein 11-like protein 2 OS=Homo
           sapiens GN=TCP11L2 PE=2 SV=1
          Length = 519

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 193 RIKRKGLIIKSLGGSRKHMLNSLQWASIDTLDTELKAD 80
           ++K++ L  KSL G  KH+++   W   D LD+EL AD
Sbjct: 88  QLKQEALPEKSLAGRVKHIVHQAFW---DVLDSELNAD 122


>sp|P18773|EST_ACILW Esterase OS=Acinetobacter lwoffii GN=est PE=3
           SV=2
          Length = 303

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 18  ACFGTYNFFSVLFVEDSQLIVSALSSVSKVSMLAHCRLFNMCFLLPPKLLIMRPFLFIL- 194
           A F  Y    V  ++   +I+S  S  + +++    RL     L+P  L++M P+L +  
Sbjct: 125 AIFDVYQALLVQGIKPKDIIISGDSCGANLALALSLRLKQQPELMPSGLILMSPYLDLTL 184

Query: 195 --HHLRFNCK 218
               LRFN K
Sbjct: 185 TSESLRFNQK 194
tr_hit_id B4LXD5
Definition tr|B4LXD5|B4LXD5_DROVI GJ24366 OS=Drosophila virilis
Align length 29
Score (bit) 33.5
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919271|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B08.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4LXD5|B4LXD5_DROVI GJ24366 OS=Drosophila virilis GN=GJ24366 ...    33   7.0  
tr|Q7NE78|Q7NE78_GLOVI Gll4002 protein OS=Gloeobacter violaceus ...    33   9.2  
tr|Q29AS9|Q29AS9_DROPS GA13308 OS=Drosophila pseudoobscura pseud...    33   9.2  
tr|B4G5W7|B4G5W7_DROPE GL23786 OS=Drosophila persimilis GN=GL237...    33   9.2  

>tr|B4LXD5|B4LXD5_DROVI GJ24366 OS=Drosophila virilis GN=GJ24366
           PE=4 SV=1
          Length = 1639

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 191 DKEERPHNQKLGRQQETHVKQSAMGEHRH 105
           D   +PHN K G+ +  H+  S MG+H H
Sbjct: 573 DDRCKPHNAKSGKNRTLHIMSSVMGDHMH 601


>tr|Q7NE78|Q7NE78_GLOVI Gll4002 protein OS=Gloeobacter violaceus
           GN=gll4002 PE=4 SV=1
          Length = 1032

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -3

Query: 187 KRKGLIIKSLGGSRKHMLNSLQWASIDTLDTELKAD 80
           + +  + +S+GG +   ++ L WA+IDTLD  LK D
Sbjct: 160 QEQNAVRQSVGGGQLPQVSGLNWAAIDTLDLFLKGD 195


>tr|Q29AS9|Q29AS9_DROPS GA13308 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA13308 PE=4 SV=2
          Length = 1658

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 191 DKEERPHNQKLGRQQETHVKQSAMGEHRH 105
           DK+ +P+N K G  +E H+  S MG H H
Sbjct: 590 DKQCQPYNTKSGSNKEMHIMSSVMGIHMH 618


>tr|B4G5W7|B4G5W7_DROPE GL23786 OS=Drosophila persimilis GN=GL23786
           PE=4 SV=1
          Length = 1651

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 191 DKEERPHNQKLGRQQETHVKQSAMGEHRH 105
           DK+ +P+N K G  +E H+  S MG H H
Sbjct: 590 DKQCQPYNTKSGSNKEMHIMSSVMGIHMH 618