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NBDC - LSDB Archive
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BP919273
Clone id YMU001_000123_B10
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAAAGCTCGAATCAGACCCGCTTATGGTTGCCAAAAGAAGGAAAAATGTGAAAGACTCTG
CTGCACAATGGGAGAGGAGTCTAGGAAGATATTTGTCACACAAAGCAAAATTCAGACTCT
TATCAAGAGGATTTTCCGGTGGTGTGCCGGGAACATAAGGAAGATTTGTCTCTTCTTCAG
CCAAGTGACTACAAGCACACTTGTCTGCATTCTCGTTTGTTTATGAACACGGATGATGGA
AATTGTTCTTCTAAAGGTAAAGAAATGGATGCTTGGAAAGCTGCAGAGGTACAGAGGCAA
TTAGTGAATAGCTACAGGAATATGCAAATGCAAATAAGGAATGTGATGGATAAGCGCAAA
TTCCTGAGAGGCCAATTATCTGGATCTCAGCTAATGATTGAGAAGGTGTTGATGAACCCG
TTTTTGTGTCACCAAAATATGTAAACACCGATAGGAGTGACTTCTCCAACAAATCTTCAA
GGAACATGGATCAGTCT
■■Homology search results ■■ -
sp_hit_id Q54IN7
Definition sp|Q54IN7|Y8027_DICDI Putative uncharacterized transmembrane protein DDB_G0288627 OS=Dictyostelium discoideum
Align length 68
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919273|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B10.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54IN7|Y8027_DICDI Putative uncharacterized transmembrane pro...    32   2.1  
sp|Q01VB1|RPOB_SOLUE DNA-directed RNA polymerase subunit beta OS...    32   2.1  
sp|P53201|SWC4_YEAST SWR1-complex protein 4 OS=Saccharomyces cer...    31   2.8  
sp|P17763|POLG_DEN1W Genome polyprotein OS=Dengue virus type 1 (...    31   3.6  
sp|P33478|POLG_DEN1S Genome polyprotein OS=Dengue virus type 1 (...    31   3.6  
sp|P27909|POLG_DEN1B Genome polyprotein OS=Dengue virus type 1 (...    31   3.6  
sp|P93203|MFP1_SOLLC MAR-binding filament-like protein 1 OS=Sola...    31   3.6  
sp|P31018|EF1A_ENTHI Elongation factor 1-alpha OS=Entamoeba hist...    31   3.6  
sp|A6UTK4|SYP_META3 Prolyl-tRNA synthetase OS=Methanococcus aeol...    30   4.7  
sp|P14365|V236_FOWPV Uncharacterized protein FPV236 OS=Fowlpox v...    30   6.1  
sp|Q6YMS4|POLG_DEN3S Genome polyprotein OS=Dengue virus type 3 (...    30   6.1  
sp|P27915|POLG_DEN3P Genome polyprotein OS=Dengue virus type 3 (...    30   6.1  
sp|Q6YMS3|POLG_DEN3M Genome polyprotein OS=Dengue virus type 3 (...    30   6.1  
sp|Q5UB51|POLG_DEN3I Genome polyprotein OS=Dengue virus type 3 (...    30   6.1  
sp|Q99D35|POLG_DEN3C Genome polyprotein OS=Dengue virus type 3 (...    30   6.1  
sp|P91613|PER_DROIN Period circadian protein (Fragment) OS=Droso...    30   6.1  

>sp|Q54IN7|Y8027_DICDI Putative uncharacterized transmembrane
           protein DDB_G0288627 OS=Dictyostelium discoideum
           GN=DDB_G0288627 PE=4 SV=1
          Length = 403

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -2

Query: 268 PFLYL*KNNFHHPCS*TNENADKCACSHLAEEETNLPYVPGTPPENPLDKSLNFALCDKY 89
           P  Y+  + F HP   T+   D    +     +  + Y+     E  + K  + A+C+ Y
Sbjct: 214 PLFYIKSSTFKHPIIDTSN--DGFPTTGAGGADNTIHYI-----EKDISKGKSIAICNDY 266

Query: 88  LPRLLSHC 65
             +L+SHC
Sbjct: 267 FEKLMSHC 274


>sp|Q01VB1|RPOB_SOLUE DNA-directed RNA polymerase subunit beta
            OS=Solibacter usitatus (strain Ellin6076) GN=rpoB PE=3
            SV=2
          Length = 1432

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +1

Query: 160  EDLSLLQPSDYKHTCLHSRLFMNTDDGNCSSKGKEMDAWKAAEVQRQLVNSYRNMQMQIR 339
            +D SL  P   + T +  ++F        S KG+E D    A  + Q+    RN+Q +IR
Sbjct: 1024 KDASLYCPPGIEGTIVDCKIF--------SRKGQEKDERSKAIEESQIQRLQRNLQDEIR 1075

Query: 340  NVMDKR-KFLRGQLSGSQLMIE 402
             + D+R K L   L G +L+ +
Sbjct: 1076 ILTDERAKRLGTLLDGKKLLAD 1097


>sp|P53201|SWC4_YEAST SWR1-complex protein 4 OS=Saccharomyces
           cerevisiae GN=SWC4 PE=1 SV=1
          Length = 476

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 157 YVPGTPPENPLDKSLNFAL-----CDKYLPRLLSHCAAE 56
           Y   + P NPL  SLNF+        KYL RLLS  AAE
Sbjct: 212 YFKASDPSNPLLSSLNFSAEKEIERKKYLQRLLSRSAAE 250


>sp|P17763|POLG_DEN1W Genome polyprotein OS=Dengue virus type 1
            (strain Nauru/West Pac/1974) PE=3 SV=2
          Length = 3392

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 41   EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGN 154
            EKC+ L C +GE S    + + +   ++K +  W  GN
Sbjct: 2631 EKCDTLLCDIGESSPNPTIEEGRTLRVLKMVEPWLRGN 2668


>sp|P33478|POLG_DEN1S Genome polyprotein OS=Dengue virus type 1
            (strain Singapore/S275/1990) PE=3 SV=1
          Length = 3396

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 41   EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGN 154
            EKC+ L C +GE S    + + +   ++K +  W  GN
Sbjct: 2630 EKCDTLLCDIGESSPNPTIEEGRTLRVLKMVEPWLRGN 2667


>sp|P27909|POLG_DEN1B Genome polyprotein OS=Dengue virus type 1
            (strain Brazil/97-11/1997) PE=3 SV=2
          Length = 3392

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 41   EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGN 154
            EKC+ L C +GE S    + + +   ++K +  W  GN
Sbjct: 2631 EKCDTLLCDIGESSPNPTIEEGRTLRVLKMVEPWLRGN 2668


>sp|P93203|MFP1_SOLLC MAR-binding filament-like protein 1 OS=Solanum
           lycopersicum GN=MFP1 PE=1 SV=1
          Length = 697

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 29/125 (23%), Positives = 53/125 (42%)
 Frame = +1

Query: 28  LPKEGKM*KTLLHNGRGV*EDICHTKQNSDSYQEDFPVVCREHKEDLSLLQPSDYKHTCL 207
           L  E K+ + L    +G+  D+ +TK++    QE       E KE L L+Q  + K T L
Sbjct: 203 LQNEKKLAEDLKFEIKGLQNDLMNTKEDKKKLQE-------ELKEKLDLIQVLEEKITLL 255

Query: 208 HSRLFMNTDDGNCSSKGKEMDAWKAAEVQRQLVNSYRNMQMQIRNVMDKRKFLRGQLSGS 387
            + +     D   S +       +       L + Y+  Q Q+ N+  + K L+ ++   
Sbjct: 256 TTEI----KDKEVSLRSNTSKLAEKESEVNSLSDMYQQSQDQLMNLTSEIKELKDEIQKR 311

Query: 388 QLMIE 402
           +  +E
Sbjct: 312 ERELE 316


>sp|P31018|EF1A_ENTHI Elongation factor 1-alpha OS=Entamoeba
           histolytica PE=2 SV=1
          Length = 430

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 10/43 (23%)
 Frame = -2

Query: 187 HLAEEETNLPYVPG----------TPPENPLDKSLNFALCDKY 89
           ++ E  TN+P+  G          TPPE P+DK L   L D Y
Sbjct: 198 NMIEPSTNMPWYKGPTLIGALDSVTPPERPVDKPLRLPLQDVY 240


>sp|A6UTK4|SYP_META3 Prolyl-tRNA synthetase OS=Methanococcus
           aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=proS PE=3
           SV=1
          Length = 456

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 253 KGKEMDAW-KAAEVQRQLVNSYRNMQMQIRNVMDKRKFLRGQLSGSQLMIE 402
           KGKE  A  KA E+ + L N+YR +++  R++   +KF   +L G+ + IE
Sbjct: 290 KGKEEIAMNKAKEIYKSLKNTYR-VKLDDRDIRPGKKFNDWELKGAPIRIE 339


>sp|P14365|V236_FOWPV Uncharacterized protein FPV236 OS=Fowlpox
           virus GN=FPV236 PE=4 SV=1
          Length = 280

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
 Frame = +1

Query: 244 CSSKGKEMDAWKAAEVQRQLVNSYRN---MQMQIRNVMDKRKFLRGQLSGSQLMIEKVL 411
           C+ +GK+ + WK  E  R+L+N+ ++   +   I N+   R  + G+   SQL+++ V+
Sbjct: 52  CNLEGKDFNDWKQLESSRRLLNTLKDNNKLHDPIINIRHTRIKINGEYV-SQLLLDYVI 109
tr_hit_id A9SGA7
Definition tr|A9SGA7|A9SGA7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 110
Score (bit) 40.0
E-value 0.061
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919273|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B10.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SGA7|A9SGA7_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.061
tr|B3MK98|B3MK98_DROAN GF15853 OS=Drosophila ananassae GN=GF1585...    35   1.5  
tr|Q8IFP4|Q8IFP4_PLAF7 Erythrocyte membrane-associated antigen, ...    34   3.4  
tr|Q9VM26|Q9VM26_DROME Protein Wnt OS=Drosophila melanogaster GN...    34   4.4  
tr|Q4V3S5|Q4V3S5_DROME Protein Wnt OS=Drosophila melanogaster GN...    34   4.4  
tr|B4Q5E4|B4Q5E4_DROSI Wingless OS=Drosophila simulans GN=wg PE=...    34   4.4  
tr|B4HY49|B4HY49_DROSE GM16377 (Fragment) OS=Drosophila sechelli...    34   4.4  
tr|B3N6B6|B3N6B6_DROER GG10469 OS=Drosophila erecta GN=GG10469 P...    34   4.4  
tr|Q0W2Z3|Q0W2Z3_UNCMA Putative RNase P, component 3 OS=Uncultur...    33   5.7  
tr|Q16Z55|Q16Z55_AEDAE Mitogen activated protein kinase kinase k...    33   7.5  
tr|B4NZL8|B4NZL8_DROYA GE14461 OS=Drosophila yakuba GN=GE14461 P...    33   7.5  
tr|Q9VJY7|Q9VJY7_DROME CG7099 OS=Drosophila melanogaster GN=CG70...    33   9.8  
tr|B4Q4T2|B4Q4T2_DROSI GD23897 OS=Drosophila simulans GN=GD23897...    33   9.8  
tr|B4P363|B4P363_DROYA GE18653 OS=Drosophila yakuba GN=GE18653 P...    33   9.8  
tr|B4IEL1|B4IEL1_DROSE GM10488 OS=Drosophila sechellia GN=GM1048...    33   9.8  
tr|B3NAX1|B3NAX1_DROER GG23849 OS=Drosophila erecta GN=GG23849 P...    33   9.8  

>tr|A9SGA7|A9SGA7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229456 PE=4 SV=1
          Length = 1827

 Score = 40.0 bits (92), Expect = 0.061
 Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
 Frame = +1

Query: 103 KQNSDSYQEDFPVVCREHKEDLSLLQ----PSDYKHTCLHSRLFM--------NTDDGNC 246
           KQ    +Q   P V  + K + S  +    P+D++ T LHSR  +        ++   NC
Sbjct: 226 KQVFGCFQTVNPPVTHDTKREKSYHRLAGFPADFRDTYLHSRFDVLQYCTNQPSSAVVNC 285

Query: 247 SSKGKEMDAWKAAEVQRQLVNSYRNMQMQIRNVMDKRKFLRGQLSGSQLM 396
             + +E+DAW+AA+ +R+     R  ++++  + ++R   RG  + ++L+
Sbjct: 286 PEQ-EEVDAWRAADARRERNRCERAQRVELERLYNERSLERGTAAAAKLL 334


>tr|B3MK98|B3MK98_DROAN GF15853 OS=Drosophila ananassae GN=GF15853
           PE=4 SV=1
          Length = 444

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 41  EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGNIRKICLFFSQVTT 193
           + C+RLCC  G   R +     + QT  K +F+WC     + CL   +V T
Sbjct: 397 DSCDRLCCNRGHRHRTV-----EEQTNCKCVFKWCCEVTCEKCLEHREVNT 442


>tr|Q8IFP4|Q8IFP4_PLAF7 Erythrocyte membrane-associated antigen,
            putative OS=Plasmodium falciparum (isolate 3D7)
            GN=PFD1045c PE=4 SV=1
          Length = 4261

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +1

Query: 94   CHTKQNSDSYQEDFPVVCREHKEDLSLLQPSDYKHTCLHSRLFMNTDDGNCSSKGKEMDA 273
            C+   N++SY E   +  +  K+          + TC+++   +NTD        K ++ 
Sbjct: 1670 CYNNNNNNSYLEYKKIKNKRKKKKFKNYTIEPQQRTCVYNEKNINTD--------KNVNI 1721

Query: 274  WKAAEVQRQL---VNSYRNMQMQIRNVMDKRKFLRGQLS 381
             K   V + +   +N  RN+   I +  DK K L+  LS
Sbjct: 1722 NKNINVNKNINVNINKNRNILYDIIHTTDKSKMLKSNLS 1760


>tr|Q9VM26|Q9VM26_DROME Protein Wnt OS=Drosophila melanogaster
           GN=Wnt6 PE=2 SV=2
          Length = 435

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 41  EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGNIRKICLFFSQVTT 193
           ++C+RLCC  G   R +     + QT  K +F+WC     + CL    V T
Sbjct: 388 DRCDRLCCNRGHTRRIV-----EEQTNCKCVFKWCCEVTCEKCLEHRAVNT 433


>tr|Q4V3S5|Q4V3S5_DROME Protein Wnt OS=Drosophila melanogaster
           GN=Wnt6 PE=2 SV=1
          Length = 304

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 41  EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGNIRKICLFFSQVTT 193
           ++C+RLCC  G   R +     + QT  K +F+WC     + CL    V T
Sbjct: 257 DRCDRLCCNRGHTRRIV-----EEQTNCKCVFKWCCEVTCEKCLEHRAVNT 302


>tr|B4Q5E4|B4Q5E4_DROSI Wingless OS=Drosophila simulans GN=wg PE=4
           SV=1
          Length = 447

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 41  EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGNIRKICLFFSQVTT 193
           ++C+RLCC  G   R +     + QT  K +F+WC     + CL    V T
Sbjct: 400 DRCDRLCCNRGHTRRIV-----EEQTNCKCVFKWCCEVTCEKCLEHRAVNT 445


>tr|B4HY49|B4HY49_DROSE GM16377 (Fragment) OS=Drosophila sechellia
           GN=GM16377 PE=4 SV=1
          Length = 338

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 41  EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGNIRKICLFFSQVTT 193
           ++C+RLCC  G   R +     + QT  K +F+WC     + CL    V T
Sbjct: 291 DRCDRLCCNRGHTRRIV-----EEQTNCKCVFKWCCEVTCEKCLEHRAVNT 336


>tr|B3N6B6|B3N6B6_DROER GG10469 OS=Drosophila erecta GN=GG10469 PE=4
           SV=1
          Length = 407

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 41  EKCERLCCTMGEESRKIFVTQSKIQTLIKRIFRWCAGNIRKICLFFSQVTT 193
           ++C+RLCC  G   R +     + QT  K +F+WC     + CL    V T
Sbjct: 360 DRCDRLCCNRGHTRRIV-----EEQTNCKCVFKWCCEVTCEKCLEHRAVNT 405


>tr|Q0W2Z3|Q0W2Z3_UNCMA Putative RNase P, component 3 OS=Uncultured
           methanogenic archaeon RC-I GN=rnp3 PE=4 SV=1
          Length = 240

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -2

Query: 418 GSSTPSQSLAEIQIIGLSGICAYPSHSLFA 329
           GSS+ S+   E   +GLSGICA P H  FA
Sbjct: 21  GSSSVSRMALEAGRLGLSGICASPHHDFFA 50


>tr|Q16Z55|Q16Z55_AEDAE Mitogen activated protein kinase kinase
           kinase 5, mapkkk5, mekk5 OS=Aedes aegypti GN=AAEL008311
           PE=4 SV=1
          Length = 799

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
 Frame = +1

Query: 97  HTKQNSDSYQEDFPVV-CREHKEDLSLLQPSDYKHTCLH-SRLFMNT---------DDGN 243
           + +QNSD +Q  FP V CR+   +L LL  +D     +  SR  +N          DDGN
Sbjct: 544 YVQQNSDDFQMLFPTVQCRQRFYELILLVTADQNSGFVDLSRNIINNDVMYEYEFDDDGN 603

Query: 244 -----CSSKGKEMDAW----KAAEVQRQLVNSYRNMQMQIRNVMDKRKFLRGQLSGSQLM 396
                  S GK   AW    +     +++  ++    ++  N + K++ +   + GS ++
Sbjct: 604 RIILGQGSHGKVFSAWNLKTRMKIAVKEVPENFGQQILEGLNYLHKQQVVHRDIKGSNVL 663

Query: 397 I 399
           +
Sbjct: 664 V 664