NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919274
Clone id YMU001_000123_B11
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTTTAGGCTAGCTGGGTTGAGGGTTCTGTTTTGGCATACAATGGCTGCTAGGCTATGCT
CTGAGGCGGTGCGAAGTAGCAGTGTTCTCTCCCGTTCCCAACATCCGCTATGCCAACTCT
TCGTTCTGGGCCGTGGCGAGCGCGCCTTCTCCACCGACAACTCTTATTCAGGTCAGCAAA
TGCGGATAGAAAGGTTATGGCGCGAGTTTTATTTGGGCTCAAACCACTGGAGAACTAAAG
AGGGTCTGGATGAGCTTTTATGGATAGAAGATGGCGGAACACATGCAATTAAGAAGGGTC
AACAGTATCCTTTACCTGGTACTCAGCAGCTGAATGGACCTCCACCAGGAGCAGCGACAA
CACCGACTCGCATTGGATACTACTGAGGACCAGAGAAACATCCTCTATGTGGAGCTGGTG
AAGTAACTGCTCATCATTAAAGCTGCTCTACGAAGATTGGAAGGGGGATATGACTAGTTA
GAGTAAATTTAGGAGTTGCAAATATATCATACACAGGAGCAGTTAATGAATGGATAATC
■■Homology search results ■■ -
sp_hit_id Q087L4
Definition sp|Q087L4|LIPB_SHEFN Octanoyltransferase OS=Shewanella frigidimarina (strain NCIMB 400)
Align length 23
Score (bit) 30.8
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919274|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B11.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q087L4|LIPB_SHEFN Octanoyltransferase OS=Shewanella frigidima...    31   4.4  

>sp|Q087L4|LIPB_SHEFN Octanoyltransferase OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=lipB PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 TWYSAAEWTSTRSSDNTDSHWIL 382
           TW++  E+T TR SD+ D  WI+
Sbjct: 19  TWHAMQEYTDTRDSDSQDELWIV 41
tr_hit_id Q08T84
Definition tr|Q08T84|Q08T84_STIAU Xylosidase/arabinosidase OS=Stigmatella aurantiaca DW4/3-1
Align length 67
Score (bit) 33.1
E-value 9.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919274|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B11.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q08T84|Q08T84_STIAU Xylosidase/arabinosidase OS=Stigmatella a...    33   9.5  

>tr|Q08T84|Q08T84_STIAU Xylosidase/arabinosidase OS=Stigmatella
           aurantiaca DW4/3-1 GN=STIAU_6242 PE=4 SV=1
          Length = 469

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +3

Query: 132 RGERAFSTDNSYS-GQQMRIERLWREFY----LGSNHWRTKEGLDELLWIEDGGTHAIKK 296
           RG    STD++ + G  ++ +  W  FY    L  NHW     +D+L +  DG    +K+
Sbjct: 252 RGIYIDSTDSATNHGSIVQYKGQWYAFYHTSMLSGNHWLRSVSVDKLYYNNDGTIQLVKQ 311

Query: 297 GQQYPLP 317
            +Q+  P
Sbjct: 312 TKQHGTP 318