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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919275
Clone id YMU001_000123_B12
Library
Length 374
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGAGAAAGACAGTTTTGAAGACTCTGAGAGCGAAGCAAGTGAGGCTATGAGGGAGTCGT
CACCACATTCATCAGCAAATTCTAGCATTCAGCCTATGAAGTGGGCAAGTGAATTTTCTA
GACATCCTAACATTGCACTCGATTCCTCCGATGATGAATTGGGTGGGATGCAAGTCTCGT
CATCCTCATCATTTTCAAGCTCTTCAGCCCTCTCAAGTCCACGACCATCAACTCTAGCCA
CAAGTGTTTTTGACAACAAGCCACTCTCTCCAATCAAGTCATCCCCAGAGTTTCTTTTAC
ATCTCTCTTCTCAATCGGTTGGACGTATGACACCTCATTCTCCACCTGCTAGCTCGTCAC
TGCTGCCTCCTGGC
■■Homology search results ■■ -
sp_hit_id P47090
Definition sp|P47090|YJY5_YEAST Uncharacterized endoplasmic reticulum membrane protein YJR015W OS=Saccharomyces cerevisiae
Align length 72
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919275|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B12.
         (374 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47090|YJY5_YEAST Uncharacterized endoplasmic reticulum membr...    35   0.15 
sp|Q8VEL9|REM2_MOUSE GTP-binding protein REM 2 OS=Mus musculus G...    33   0.57 
sp|Q04189|TAP1_ANTMA Protein TAP1 OS=Antirrhinum majus GN=TAP1 P...    30   3.7  
sp|Q08BT5|K1468_XENTR LisH domain and HEAT repeat-containing pro...    30   3.7  
sp|Q9RDY2|G6PI_LEGPN Glucose-6-phosphate isomerase OS=Legionella...    30   3.7  
sp|Q5ZXH2|G6PI_LEGPH Glucose-6-phosphate isomerase OS=Legionella...    30   3.7  
sp|Q5X6Y8|G6PI_LEGPA Glucose-6-phosphate isomerase OS=Legionella...    30   3.7  
sp|Q27IV2|SHRM3_XENLA Protein Shroom3 OS=Xenopus laevis GN=shroo...    30   4.9  
sp|Q9WTY2|REM2_RAT GTP-binding protein REM 2 OS=Rattus norvegicu...    30   4.9  
sp|Q6J2K6|BIP2C_ORYSI Probable protein phosphatase 2C BIPP2C1 OS...    30   4.9  
sp|Q883H9|SYT_PSESM Threonyl-tRNA synthetase OS=Pseudomonas syri...    29   6.3  
sp|P31320|KAPR_BLAEM cAMP-dependent protein kinase regulatory su...    29   6.3  
sp|Q4ZUG7|SYT_PSEU2 Threonyl-tRNA synthetase OS=Pseudomonas syri...    29   8.3  
sp|Q48JS3|SYT_PSE14 Threonyl-tRNA synthetase OS=Pseudomonas syri...    29   8.3  
sp|Q02WN1|SYT_LACLS Threonyl-tRNA synthetase OS=Lactococcus lact...    29   8.3  
sp|Q57N96|SYD_SALCH Aspartyl-tRNA synthetase OS=Salmonella chole...    29   8.3  

>sp|P47090|YJY5_YEAST Uncharacterized endoplasmic reticulum membrane
           protein YJR015W OS=Saccharomyces cerevisiae GN=YJR015W
           PE=1 SV=1
          Length = 510

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -2

Query: 310 EERCKRNSGDDLIGESGLLSKTLVARVDGRGLERAEELENDEDDETCIPPNSSSEESSAM 131
           EE C+RN   DL    G      V  +DG+  + +++ E + +D+   PP+S S  S  +
Sbjct: 20  EEYCRRNDIHDLSSVVGDAVSQGVPDMDGQTTDSSKDPEPNSEDKKAFPPSSGSFFSPNL 79

Query: 130 LGCLENSLAHFI 95
            G  +  L  F+
Sbjct: 80  QGQRKKVLLKFV 91


>sp|Q8VEL9|REM2_MOUSE GTP-binding protein REM 2 OS=Mus musculus
           GN=Rem2 PE=2 SV=1
          Length = 272

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 23/64 (35%), Positives = 29/64 (45%)
 Frame = -2

Query: 373 PGGSSDELAGGE*GVIRPTD*EERCKRNSGDDLIGESGLLSKTLVARVDGRGLERAEELE 194
           P GSSD L  GE   +   D   +        L+GESG+   TL     G   + A E+E
Sbjct: 26  PSGSSDSLGSGE-AALTQKDGVFKVM------LVGESGVGKSTLAGTFGGLQGDHAHEME 78

Query: 193 NDED 182
           N ED
Sbjct: 79  NSED 82


>sp|Q04189|TAP1_ANTMA Protein TAP1 OS=Antirrhinum majus GN=TAP1 PE=2
           SV=1
          Length = 107

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 172 CIPPNSSSEESSAMLGCLENSLAHF 98
           C+PP+SSS+E    LGC+ +  A F
Sbjct: 59  CLPPDSSSKEHFCNLGCMLDKCAKF 83


>sp|Q08BT5|K1468_XENTR LisH domain and HEAT repeat-containing
           protein KIAA1468 homolog OS=Xenopus tropicalis PE=2 SV=1
          Length = 1196

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
 Frame = -2

Query: 373 PGGSSDEL---AGGE*GVIRPTD*EERCKRNSGDDLIGESGLLSKTLVARVDGRGLERAE 203
           PGGSS  +   AGG  GV+ P+           D    E G           G   E  E
Sbjct: 10  PGGSSGGITGGAGGSLGVVGPSTSTSSVNPFLSDSEEEEDG-----------GEEEEEEE 58

Query: 202 ELENDEDDETCIPPNSSSEESSA 134
           E +N+EDDE   P N     S A
Sbjct: 59  EDDNEEDDEDVSPLNERPAASLA 81


>sp|Q9RDY2|G6PI_LEGPN Glucose-6-phosphate isomerase OS=Legionella
           pneumophila GN=pgi PE=3 SV=1
          Length = 497

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 214 ERAEELENDEDDETCIPPNSSSEESSAMLGCLE 116
           + A+ +  + D  TC+ P+S++ ESS  + C+E
Sbjct: 20  KEADRVRLNSDSLTCVVPDSNNYESSKQINCIE 52


>sp|Q5ZXH2|G6PI_LEGPH Glucose-6-phosphate isomerase OS=Legionella
           pneumophila subsp. pneumophila (strain Philadelphia 1 /
           ATCC 33152 / DSM 7513) GN=pgi PE=3 SV=2
          Length = 499

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 214 ERAEELENDEDDETCIPPNSSSEESSAMLGCLE 116
           + A+ +  + D  TC+ P+S++ ESS  + C+E
Sbjct: 20  KEADRVRLNSDSLTCVVPDSNNYESSKQINCIE 52


>sp|Q5X6Y8|G6PI_LEGPA Glucose-6-phosphate isomerase OS=Legionella
           pneumophila (strain Paris) GN=pgi PE=3 SV=1
          Length = 499

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 214 ERAEELENDEDDETCIPPNSSSEESSAMLGCLE 116
           + A+ +  + D  TC+ P+S++ ESS  + C+E
Sbjct: 20  KEADRVRLNSDSLTCVVPDSNNYESSKQINCIE 52


>sp|Q27IV2|SHRM3_XENLA Protein Shroom3 OS=Xenopus laevis GN=shroom3
            PE=2 SV=1
          Length = 1788

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 223  RGLERAEELENDE--DDETCIPPNSSSEE 143
            RG E A   +N E  D E C+P NSSSE+
Sbjct: 1172 RGKESASPTDNKEISDQEWCLPENSSSED 1200


>sp|Q9WTY2|REM2_RAT GTP-binding protein REM 2 OS=Rattus norvegicus
           GN=Rem2 PE=1 SV=1
          Length = 272

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = -2

Query: 367 GSSDELAGGE*GVIRPTD*EERCKRNSGDDLIGESGLLSKTLVARVDGRGLERAEELEND 188
           GSSD L  GE   +   D   +        L+GESG+   TL     G   + A E+EN 
Sbjct: 28  GSSDSLGSGE-AALAQKDGVFKVM------LLGESGVGKSTLAGTFGGLQGDNAHEMENS 80

Query: 187 ED 182
           ED
Sbjct: 81  ED 82


>sp|Q6J2K6|BIP2C_ORYSI Probable protein phosphatase 2C BIPP2C1
           OS=Oryza sativa subsp. indica GN=BIPP2C1 PE=2 SV=1
          Length = 569

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 25/83 (30%), Positives = 37/83 (44%)
 Frame = -2

Query: 367 GSSDELAGGE*GVIRPTD*EERCKRNSGDDLIGESGLLSKTLVARVDGRGLERAEELEND 188
           GSS+  A  E GV      E  C    G D  G +GL    LV+ VDG G E++ ++   
Sbjct: 166 GSSNRDASSEVGV------ESEC----GSDADGRNGLGEGELVSSVDGGGAEKSSKVTGV 215

Query: 187 EDDETCIPPNSSSEESSAMLGCL 119
             +E      ++ E   A +G +
Sbjct: 216 LSEEGVDGMETALEPCVASVGSI 238
tr_hit_id Q9NJG8
Definition tr|Q9NJG8|Q9NJG8_LEIDO DNA topoisomerase I OS=Leishmania donovani donovani
Align length 39
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919275|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_B12.
         (374 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9NJG8|Q9NJG8_LEIDO DNA topoisomerase I OS=Leishmania donovan...    35   2.4  
tr|Q66R65|Q66R65_YEAST YJR015W OS=Saccharomyces cerevisiae GN=YJ...    35   2.4  
tr|Q7RQE9|Q7RQE9_PLAYO Epsilon-adaptin, putative-related OS=Plas...    34   3.2  
tr|Q7QGB5|Q7QGB5_ANOGA AGAP009406-PA (Fragment) OS=Anopheles gam...    34   4.1  
tr|A7KIJ8|A7KIJ8_SALSA DAXX OS=Salmo salar GN=DAXX PE=4 SV=1           33   5.4  
tr|A5D3M6|A5D3M6_PELTS Biotin synthase and related enzymes OS=Pe...    33   5.4  

>tr|Q9NJG8|Q9NJG8_LEIDO DNA topoisomerase I OS=Leishmania donovani
           donovani GN=TOP1 PE=3 SV=1
          Length = 949

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +1

Query: 250 LTTSHSLQSSHPQSFFYISLLNRLDV*HLILHLLARHCC 366
           LT  H L+   P SF Y+S LNR    H   H L  HCC
Sbjct: 17  LTQHHGLKPVQPMSFCYLSFLNR----HTHEHHLRLHCC 51


>tr|Q66R65|Q66R65_YEAST YJR015W OS=Saccharomyces cerevisiae
           GN=YJR015W PE=4 SV=1
          Length = 510

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -2

Query: 310 EERCKRNSGDDLIGESGLLSKTLVARVDGRGLERAEELENDEDDETCIPPNSSSEESSAM 131
           EE C+RN   DL    G      V  +DG+  + +++ E + +D+   PP+S S  S  +
Sbjct: 20  EEYCRRNDIHDLSSVVGDAVSQGVPDMDGQTTDSSKDPEPNSEDKKAFPPSSGSFFSPNL 79

Query: 130 LGCLENSLAHFI 95
            G  +  L  F+
Sbjct: 80  QGQRKKVLLKFV 91


>tr|Q7RQE9|Q7RQE9_PLAYO Epsilon-adaptin, putative-related
           OS=Plasmodium yoelii yoelii GN=PY01150 PE=4 SV=1
          Length = 1231

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/52 (36%), Positives = 33/52 (63%)
 Frame = -2

Query: 292 NSGDDLIGESGLLSKTLVARVDGRGLERAEELENDEDDETCIPPNSSSEESS 137
           ++G+DL GESG  +K  V           E+L+N+ED+ET +P N++S +++
Sbjct: 496 DAGNDLNGESGENNKNNVG----------EKLKNEEDNETDLPNNTNSSKNN 537


>tr|Q7QGB5|Q7QGB5_ANOGA AGAP009406-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP009406 PE=4 SV=4
          Length = 441

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -2

Query: 307 ERCKRNSGDDLIGESGLLSKTLVARVDGRGLERAEELENDEDDE----TCIPPNSSSEES 140
           ERCK+N    L+GE  +L       V   G +  EE E D+DDE      I P+   E S
Sbjct: 24  ERCKQNERKLLLGEEDILHTKDGPAVGQTGEQTEEEEEEDDDDEEMEMIVIDPSRDYESS 83

Query: 139 SAML 128
           +  L
Sbjct: 84  NDSL 87


>tr|A7KIJ8|A7KIJ8_SALSA DAXX OS=Salmo salar GN=DAXX PE=4 SV=1
          Length = 733

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = -2

Query: 319 TD*EERCKR--NSGDDLIGESGLLSKT------LVARVDGRGLERAEELENDEDDETCIP 164
           T+ EER KR         G+S  L  T      L    DG G E+AEE E+DEDDE+  P
Sbjct: 406 TEEEERTKRIERERQKKEGQSSALEATTADDNPLKKGEDGEGEEQAEEEEDDEDDESSDP 465


>tr|A5D3M6|A5D3M6_PELTS Biotin synthase and related enzymes
           OS=Pelotomaculum thermopropionicum (strain DSM 13744 /
           JCM 10971 / SI) GN=BioB PE=4 SV=1
          Length = 359

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -2

Query: 223 RGLERAEELENDEDDETCIPPNSSSEESSAMLGCLENSLAHFIG------*MLEFADECG 62
           R LERA  LE    DE  +  ++  EES+A+  C +   + F+G       ++EF++ C 
Sbjct: 7   RALERAANLEELSRDELAVLISADEEESAALFDCADMMRSRFMGDEVHLRGIIEFSNICS 66

Query: 61  DD 56
            +
Sbjct: 67  SN 68