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BP919282
Clone id YMU001_000123_C08
Library
Length 373
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAAAGGGCCAGGCATAGTGGCCATTTACTCAAAAACTTCCCACTTAAAGGCCAATGCGCT
TTTACGCAACTATGGACATATATACAATGCCATGTAGAGTTGGGATCTCTACCCAAAGCC
CATAAGCGGTTTGAGAGGATCGAACAGCATGCCTTTGATAACCTGCAAATACTCCTTTGT
AAATGTATCTGAAAATCTTTACACACCGCATTCTTCTCAAAATTTGCTTCTTGATAAAAT
AAGTCATAATGTACTGTGCCTGCATGAAGAAGATGCTTCTCTCACAAGTCTCCAGGCATC
CCGTCTTAATGCCATGACAGGTACCTTTTACCTGTCCAACATTCTTCTTACACCAGTGGT
CAAGAACACTTTC
■■Homology search results ■■ -
sp_hit_id Q6CMA8
Definition sp|Q6CMA8|SBE2_KLULA Protein SBE2 OS=Kluyveromyces lactis
Align length 74
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919282|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_C08.
         (373 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6CMA8|SBE2_KLULA Protein SBE2 OS=Kluyveromyces lactis GN=SBE...    33   0.34 
sp|B2XWN9|RPOC2_FAGEA DNA-directed RNA polymerase subunit beta''...    31   2.2  
sp|Q6P3W7|SCYL2_HUMAN SCY1-like protein 2 OS=Homo sapiens GN=SCY...    30   2.8  
sp|Q7A075|TOP3_STAAW DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|Q6G767|TOP3_STAAS DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|Q6GEH9|TOP3_STAAR DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|Q7A455|TOP3_STAAN DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|Q99S17|TOP3_STAAM DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|Q5HDV4|TOP3_STAAC DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|P0C2W6|TOP3_STAAB Putative DNA topoisomerase 3 OS=Staphylococ...    30   3.7  
sp|Q2FW03|TOP3_STAA8 DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|Q2FEN5|TOP3_STAA3 DNA topoisomerase 3 OS=Staphylococcus aureu...    30   3.7  
sp|O67899|PPSA_AQUAE Phosphoenolpyruvate synthase OS=Aquifex aeo...    30   4.9  
sp|Q8LB01|DAPB2_ARATH Dihydrodipicolinate reductase 2, chloropla...    30   4.9  
sp|Q9LJP4|CSLC4_ARATH Xyloglucan glycosyltransferase 4 OS=Arabid...    30   4.9  
sp|A2SC91|SYL_METPP Leucyl-tRNA synthetase OS=Methylibium petrol...    29   6.3  
sp|Q9X0I0|PUR8_THEMA Adenylosuccinate lyase OS=Thermotoga mariti...    29   6.3  
sp|Q9U8U5|ERF1_TETTH Eukaryotic peptide chain release factor sub...    29   6.3  
sp|Q6L538|CSLC7_ORYSJ Probable xyloglucan glycosyltransferase 7 ...    29   6.3  
sp|Q9SRT3|CSLC6_ARATH Probable xyloglucan glycosyltransferase 6 ...    29   6.3  
sp|Q69L19|CSLC2_ORYSJ Probable xyloglucan glycosyltransferase 2 ...    29   6.3  
sp|Q7PC70|CSLC2_ORYSI Probable xyloglucan glycosyltransferase 2 ...    29   6.3  
sp|Q5U2X0|CARF_RAT CDKN2A-interacting protein OS=Rattus norvegic...    29   6.3  
sp|Q5SUV1|RSAD1_MOUSE Radical S-adenosyl methionine domain-conta...    29   8.3  
sp|Q9HA92|RSAD1_HUMAN Radical S-adenosyl methionine domain-conta...    29   8.3  
sp|A5D7B1|RSAD1_BOVIN Radical S-adenosyl methionine domain-conta...    29   8.3  
sp|Q83MX3|ISPDF_TROWT Bifunctional enzyme ispD/ispF OS=Tropherym...    29   8.3  
sp|Q83NK3|ISPDF_TROW8 Bifunctional enzyme ispD/ispF OS=Tropherym...    29   8.3  
sp|Q3IUB7|DNAJ_NATPD Chaperone protein dnaJ OS=Natronomonas phar...    29   8.3  
sp|Q8LIY0|CSLC1_ORYSJ Probable xyloglucan glycosyltransferase 1 ...    29   8.3  

>sp|Q6CMA8|SBE2_KLULA Protein SBE2 OS=Kluyveromyces lactis GN=SBE2
           PE=3 SV=1
          Length = 821

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 122 ISGLRGSNSMPLITCKYSFVNVSENLYTPHSSQNLLLDKISH-NVLCLHEEDASLTSLQA 298
           + G   +N MP    K SF +V +N  TPHSS    LD +SH       + D S+T+++ 
Sbjct: 155 LDGKVSANVMP--RGKKSFSSVKQNPVTPHSSVTDGLDDVSHLTDTSFSDADLSVTTVKV 212

Query: 299 SRLNAMTGTFYLSN 340
           +       T Y+ N
Sbjct: 213 ASAPKSMNTKYIFN 226


>sp|B2XWN9|RPOC2_FAGEA DNA-directed RNA polymerase subunit beta''
            OS=Fagopyrum esculentum subsp. ancestrale GN=rpoC2 PE=3
            SV=1
          Length = 1365

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 167  KYSFVNVSENLYTPHSSQNLLLDKISHNVLCLHEEDASLTSLQASRLNAMTGTFYLSNIL 346
            KY F++ +  +Y P    N++L+    N  CLH      TS +        G F   N+ 
Sbjct: 1012 KYYFIDDNRKIYNPDPVSNIVLNSFKLNWYCLHHNYYEETSARMG-----LGQFLCENVC 1066

Query: 347  L 349
            L
Sbjct: 1067 L 1067


>sp|Q6P3W7|SCYL2_HUMAN SCY1-like protein 2 OS=Homo sapiens GN=SCYL2
           PE=1 SV=1
          Length = 929

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 71  YGHIYNAM*SWDLYPKPISGLRGSNSMPLITCKYSFVNVSENLYTPHSSQNLLLDKISHN 250
           +  + N + +W+  P PIS       +  +  KY  + VSE L   HSS  ++   I+  
Sbjct: 123 FASLANVLGNWENLPSPISPDIKDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNITPE 182

Query: 251 VLCLHEEDA 277
            + L++  A
Sbjct: 183 NIILNKSGA 191


>sp|Q7A075|TOP3_STAAW DNA topoisomerase 3 OS=Staphylococcus aureus
           (strain MW2) GN=topB PE=3 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 206 VCKDFQIHLQRSICRLSKACCSILSNRLWALGRDPNSTWHCIYVHSCVKAH 54
           VC+D     ++++ R + A C     +L   G+   + + C+  HS  +AH
Sbjct: 619 VCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAH 669


>sp|Q6G767|TOP3_STAAS DNA topoisomerase 3 OS=Staphylococcus aureus
           (strain MSSA476) GN=topB PE=3 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 206 VCKDFQIHLQRSICRLSKACCSILSNRLWALGRDPNSTWHCIYVHSCVKAH 54
           VC+D     ++++ R + A C     +L   G+   + + C+  HS  +AH
Sbjct: 619 VCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAH 669


>sp|Q6GEH9|TOP3_STAAR DNA topoisomerase 3 OS=Staphylococcus aureus
           (strain MRSA252) GN=topB PE=3 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 206 VCKDFQIHLQRSICRLSKACCSILSNRLWALGRDPNSTWHCIYVHSCVKAH 54
           VC+D     ++++ R + A C     +L   G+   + + C+  HS  +AH
Sbjct: 619 VCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAH 669


>sp|Q7A455|TOP3_STAAN DNA topoisomerase 3 OS=Staphylococcus aureus
           (strain N315) GN=topB PE=3 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 206 VCKDFQIHLQRSICRLSKACCSILSNRLWALGRDPNSTWHCIYVHSCVKAH 54
           VC+D     ++++ R + A C     +L   G+   + + C+  HS  +AH
Sbjct: 619 VCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAH 669


>sp|Q99S17|TOP3_STAAM DNA topoisomerase 3 OS=Staphylococcus aureus
           (strain Mu50 / ATCC 700699) GN=topB PE=3 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 206 VCKDFQIHLQRSICRLSKACCSILSNRLWALGRDPNSTWHCIYVHSCVKAH 54
           VC+D     ++++ R + A C     +L   G+   + + C+  HS  +AH
Sbjct: 619 VCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAH 669


>sp|Q5HDV4|TOP3_STAAC DNA topoisomerase 3 OS=Staphylococcus aureus
           (strain COL) GN=topB PE=3 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 206 VCKDFQIHLQRSICRLSKACCSILSNRLWALGRDPNSTWHCIYVHSCVKAH 54
           VC+D     ++++ R + A C     +L   G+   + + C+  HS  +AH
Sbjct: 619 VCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAH 669


>sp|P0C2W6|TOP3_STAAB Putative DNA topoisomerase 3 OS=Staphylococcus
           aureus (strain bovine RF122 / ET3-1) GN=topB PE=5 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 206 VCKDFQIHLQRSICRLSKACCSILSNRLWALGRDPNSTWHCIYVHSCVKAH 54
           VC+D     ++++ R + A C     +L   G+   + + C+  HS  +AH
Sbjct: 619 VCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAH 669
tr_hit_id B6MRS8
Definition tr|B6MRS8|B6MRS8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 69
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919282|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_C08.
         (373 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6MRS8|B6MRS8_BRAFL Putative uncharacterized protein OS=Branc...    35   1.9  
tr|A1S4B0|A1S4B0_SHEAM Type IV pilin biogenesis protein, putativ...    33   5.4  

>tr|B6MRS8|B6MRS8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_85871 PE=4 SV=1
          Length = 1631

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +2

Query: 116 KPISGLRGSNSMPLITCKYSFVNVSENLYTPHSSQNLLLDKISHNVLCLHEEDASLTSLQ 295
           KP++G    +S+   TCK    N++E   TP S++N++ D +   +L    E ++  + Q
Sbjct: 460 KPLAGTEAGSSIEKATCKPQTDNLTEAANTPRSTENVVDDLLKKLILMDSSEKSNGVTEQ 519

Query: 296 ASRLNAMTG 322
              +N   G
Sbjct: 520 EMDVNIKNG 528


>tr|A1S4B0|A1S4B0_SHEAM Type IV pilin biogenesis protein, putative
           OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
           GN=Sama_1009 PE=4 SV=1
          Length = 1148

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 217 RRMRCVKIFRYIYK-GVFAGYQRHAVRSSQTAYGLWVEIPTLHG 89
           +R  C   F ++ + GVF G+ RH V S QT  G W E P   G
Sbjct: 90  KRNACASSFEFLKEQGVFTGFMRHYVYSGQT--GSWEEFPRSDG 131