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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919283
Clone id YMU001_000123_C09
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCTGAAATTGATGATTGTATGCTTTTGAAAGCTGAAAGGATCAGCAGGATTATGAAGAAG
TCAGCATATTTACCTCTGCTGGATTTGGTTCTGGACCCAACCTTCACCGAGTTGTAATGA
AATGACAGCTGATGGTTGTCATTGTGTTCTCAATTTGTAGCTCTGTGAAAAGCCACGTTT
ATTCATCTTAAGGAATTGAGAAGAGTTGTCGATATTCGTGGAGCGTGCTGTCAAAGAAAG
TTTAAAGGTCTAAGATGCTGTTTAGGTAGCAGTATCATGAAAATATGATCCTGTGCCATC
TCCTTTTACACTGAAGATTCCCGTAGAAGTGAAATTGCTGCTAGGTGTTGGTCCTAGCTT
TTAGACTAAGGATGGCAAGTAAACCCCAATTCTTCAACTGTATCATAAGGCTCATGTAAG
AAAGGTCGTATGCCATTGTACAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P10466
Definition sp|P10466|TGB2_PVXXC TGB2 protein (Fragment) OS=Potato virus X (strain Xc)
Align length 26
Score (bit) 30.4
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919283|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_C09.
         (441 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10466|TGB2_PVXXC TGB2 protein (Fragment) OS=Potato virus X (...    30   3.4  
sp|P22593|TGB2_PVXCP TGB2 protein OS=Potato virus X (strain CP) ...    30   3.4  

>sp|P10466|TGB2_PVXXC TGB2 protein (Fragment) OS=Potato virus X
           (strain Xc) PE=3 SV=1
          Length = 55

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 116 YNSVKVGSRTKSSRGKYADFFIILLI 39
           YNS   GSRT  S GK A F ++LL+
Sbjct: 4   YNSPNFGSRTSLSNGKNAAFAVVLLL 29


>sp|P22593|TGB2_PVXCP TGB2 protein OS=Potato virus X (strain CP)
           PE=3 SV=1
          Length = 115

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 116 YNSVKVGSRTKSSRGKYADFFIILLI 39
           YNS   GSRT  S GK A F ++LL+
Sbjct: 64  YNSPNFGSRTSLSNGKNAAFAVVLLL 89
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919283|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_C09.
         (441 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******