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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919295
Clone id YMU001_000123_D09
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATTCTTCCAGTGTAAAGTCAAAAGTAAGCATATGATATAGAAAGTA
CTCAAGTGCCTGACAACCATTGAGAAAACTCGAAAGCTTGCAGTAAGCTTGGAGTGGGCT
TTGGAACATACATGAGAAGTGAGACACTACGTAGGCCTAATGTATACACTATTAACGGCG
CGGGAAACGTCACACAAGGAAATTAAAGAGGATGCGTACACACCGGACAGAAGACGCGCT
CGGACGAAGCAGCTGCCTTGAGTTAGTGAGGGTGGCCCGGACCCTTGCCGTAGCCGACGC
CCTTCTTGTGGTGGTAGCCGCCCTTCTTGTACCCTTTCTTGTAAGGGTAATGACCTTTCT
TGGCCCACAACTCGGCCTCCTCACCTGCTTCTGCCCCTGCCCCAGCCACTAATTTACGCC
CCACTTCCTCCACCTCAGCATTAGCAACGCTGCTCATGTATGCCACCAGCATCACCACTA
CTATCACCAGCATGCACGTTATCTTCTTAGAAGCCATGACTAACACTTGATGGTACGAG
■■Homology search results ■■ -
sp_hit_id Q7ZZH7
Definition sp|Q7ZZH7|DBF4A_XENLA Protein DBF4 homolog A OS=Xenopus laevis
Align length 76
Score (bit) 29.6
E-value 8.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919295|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_D09.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ZZH7|DBF4A_XENLA Protein DBF4 homolog A OS=Xenopus laevis G...    30   8.5  

>sp|Q7ZZH7|DBF4A_XENLA Protein DBF4 homolog A OS=Xenopus laevis
           GN=dbf4 PE=1 SV=1
          Length = 661

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 9   KSKHMI*KVLKCLTTIEKTRKLAVSLEWALE--HT*EVRHYVGLMYTLLTARETSHKEIK 182
           + K ++ + +K    + K   L+ +L W ++  H  E +HY+    T L     S   +K
Sbjct: 120 RGKSLVKRAIKEQEILPKNSILSNALNWGVKILHVEEAKHYIEKKKTALQQVRKSQPVVK 179

Query: 183 EDAYTPDRRRARTKQL 230
            ++    RR+ + ++L
Sbjct: 180 VESKPQTRRKVKPQKL 195
tr_hit_id Q4SMZ1
Definition tr|Q4SMZ1|Q4SMZ1_TETNG DNA polymerase (Fragment) OS=Tetraodon nigroviridis
Align length 63
Score (bit) 33.1
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919295|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_D09.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4SMZ1|Q4SMZ1_TETNG DNA polymerase (Fragment) OS=Tetraodon ni...    33   8.3  

>tr|Q4SMZ1|Q4SMZ1_TETNG DNA polymerase (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00015518001 PE=3 SV=1
          Length = 1753

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 25/63 (39%), Positives = 30/63 (47%)
 Frame = -1

Query: 331 RSLPLQERVQEGRLPPQEGRRLRQGSGPPSLTQGSCFVRARLLSGVYASSLISLCDVSRA 152
           R +P  E   E + PPQ  R +  GSGPPSL  G     A  L G +  S IS    SR 
Sbjct: 699 RPVPQPEDGAEPQEPPQRDR-VPGGSGPPSLPHGQSCASA-ALPGAFLRSDISFYGCSRR 756

Query: 151 VNS 143
           V +
Sbjct: 757 VGA 759