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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919297
Clone id YMU001_000123_D11
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAATGTGCACCAGATTAACTCCCAGTCATACATATTCAGCTACCAGTTTTCTGTGGATCA
ACTGACTGCCAAAAGTTTTGTTGATACAACCAGCCATATAAAAAGCCGACTGTGGCAAGT
CAACTATCTAATGCCATCACACAAGTCTTGTAGGGTTGATGAATTACTTAGTTAAAATCC
TGATAACCCTCAGCCCTAAGTTAGCCTCCTCTAATCCAAAATACACAAAAAAAAATGATG
TTAAAGTACCTGACAAACCAGCATCCTCCAACAAAATTCAGACAGACATCAGGTGCTTAC
ATCAACCTGCCTAGAGGCATTTGGTGCTTCTGGGCAATGCTGGAAGACATTGGGAATCTT
ATCTGAGCCTTCTGTTTGCTCGGTGCTTTCTTCTTTAGGTAATGGAGAGCTACTCTCGTG
TGTTTTCTCATCCTCTTTAGCAGGTTCTTTAGACCCCACACAAGTGTCTGCAGTAGTCTC
TGTTTTCTGCTCTTCAA
■■Homology search results ■■ -
sp_hit_id P05453
Definition sp|P05453|ERF3_YEAST Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae
Align length 50
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919297|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_D11.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05453|ERF3_YEAST Eukaryotic peptide chain release factor GTP...    32   1.6  
sp|P86174|BEND4_MOUSE BEN domain-containing protein 4 OS=Mus mus...    32   1.6  
sp|Q6ZU67|BEND4_HUMAN BEN domain-containing protein 4 OS=Homo sa...    31   2.8  
sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding moti...    31   3.6  
sp|P47068|BBC1_YEAST Myosin tail region-interacting protein MTI1...    31   3.6  
sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium ...    30   4.7  
sp|Q6BSE7|FKBP3_DEBHA FK506-binding protein 3 OS=Debaryomyces ha...    30   4.7  
sp|Q04217|DHR1_YEAST Probable ATP-dependent RNA helicase DHR1 OS...    30   4.7  
sp|Q99PP2|ZN318_MOUSE Zinc finger protein 318 (Fragment) OS=Mus ...    30   6.1  
sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding moti...    30   8.0  
sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN...    30   8.0  
sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B O...    30   8.0  
sp|P22032|EMBP1_CAVPO Eosinophil granule major basic protein 1 O...    30   8.0  
sp|O14164|EIF3C_SCHPO Eukaryotic translation initiation factor 3...    30   8.0  
sp|Q1ZXA4|C508D_DICDI Probable cytochrome P450 508D1 OS=Dictyost...    30   8.0  

>sp|P05453|ERF3_YEAST Eukaryotic peptide chain release factor
           GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35
           PE=1 SV=1
          Length = 685

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -3

Query: 495 EEQKTETTADTCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDKIPNV 346
           ++++ E +A+T   +KEP K +E   +   P+  EE TE+     K+ ++
Sbjct: 169 DKKEEEKSAETKEPTKEPTKVEEPVKKEEKPVQTEEKTEEKSELPKVEDL 218


>sp|P86174|BEND4_MOUSE BEN domain-containing protein 4 OS=Mus
           musculus GN=Bend4 PE=3 SV=1
          Length = 537

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 465 TCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDKIPNVFQHCPEAPNASRQV 304
           T  G   PA  +   H SSS LP+EE  E+ EG         +CP      ++V
Sbjct: 294 TLGGWTSPATSESHGHPSSSTLPEEEEEEEEEG---------YCPRCQELEQEV 338


>sp|Q6ZU67|BEND4_HUMAN BEN domain-containing protein 4 OS=Homo
           sapiens GN=BEND4 PE=1 SV=2
          Length = 530

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -3

Query: 465 TCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDKIPNVFQHCPEAPNASRQV 304
           T  G   PA  +   H SSS LP+EE  E  EG         +CP      ++V
Sbjct: 285 TLGGWTSPATSESHGHPSSSTLPEEEEEEDEEG---------YCPRCQELEQEV 329


>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding
           motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1
           SV=2
          Length = 217

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 459 VGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDK 358
           +G +EP K+ EK  +  +P P+EE  E  E  D+
Sbjct: 125 LGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDE 158


>sp|P47068|BBC1_YEAST Myosin tail region-interacting protein MTI1
           OS=Saccharomyces cerevisiae GN=BBC1 PE=1 SV=2
          Length = 1157

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -3

Query: 492 EQKTETTADTCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDKIPNVFQHCPEAPNAS 313
           EQ+ E +A   V   EP  E E+  E+    PK E T +TE +++         E    S
Sbjct: 289 EQEHERSA---VNKNEPYTETEEAEENEKTEPKPEFTPETEHNEEPQMELLAHKEITKTS 345

Query: 312 RQVDVST 292
           R+ D  T
Sbjct: 346 READEGT 352


>sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium
            discoideum GN=kif1 PE=1 SV=1
          Length = 2205

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 432  DEKTHESSSPLPKEESTEQTEGSDKIPNVFQHCPEAPNASRQVDVS 295
            ++++  S  PLP+++ T     S+  PNV  + P  PN++   D+S
Sbjct: 1125 NQQSSSSQPPLPQQQGTPYNPQSNN-PNVISNAPPTPNSNLLKDLS 1169


>sp|Q6BSE7|FKBP3_DEBHA FK506-binding protein 3 OS=Debaryomyces
           hansenii GN=FPR3 PE=3 SV=1
          Length = 437

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 492 EQKTETTADTCVGSKE-PAKEDEKTHESSSPLPKEESTEQTEGSDKIP 352
           E+KTE         KE P KE+ K  +     PK+E  ++ E S K P
Sbjct: 280 EEKTEKKGKKEKAKKEEPKKEEPKKEQPKKEQPKKEQPKKEEASKKFP 327


>sp|Q04217|DHR1_YEAST Probable ATP-dependent RNA helicase DHR1
           OS=Saccharomyces cerevisiae GN=ECM16 PE=1 SV=1
          Length = 1267

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 495 EEQKTETTADTCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDK 358
           +E   +TT++     +E  +E++K H S +PL + ES +   GS+K
Sbjct: 264 DEMDFDTTSEDD-DEEEDQEEEDKMHPSENPLEEVESADSETGSEK 308


>sp|Q99PP2|ZN318_MOUSE Zinc finger protein 318 (Fragment) OS=Mus
            musculus GN=Znf318 PE=1 SV=2
          Length = 2064

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 189  LSPKLASSNPKYTKKNDVKVPDKPASSNKIQTDIRCLHQPA*RHLVLLGNAGRHW 353
            LSP  +SS+ K +K N+      P+S+  +Q  ++   QP   +     +AG HW
Sbjct: 864  LSPSNSSSSNKESKMNEKSCIKSPSSTESLQPTVKQSDQPVAAYEYY--DAGSHW 916


>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding
           motif-containing protein 1 OS=Bos taurus GN=ZCRB1 PE=2
           SV=1
          Length = 217

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 459 VGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDK 358
           +G +EP K+ EK  +   P P+EE  E  E  D+
Sbjct: 125 LGEREPPKKKEKKKKKKIPEPEEEIEEVEESEDE 158
tr_hit_id A3KQ03
Definition tr|A3KQ03|A3KQ03_DANRE Novel protein similar to vertebrate mannosyl (Alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1) OS=Danio rerio
Align length 37
Score (bit) 37.4
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919297|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_D11.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3KQ03|A3KQ03_DANRE Novel protein similar to vertebrate manno...    37   0.40 
tr|Q5PYI6|Q5PYI6_FUNHE Sodium/hydrogen exchanger OS=Fundulus het...    35   1.5  
tr|Q8F7G1|Q8F7G1_LEPIN Probable DNA ligase OS=Leptospira interro...    35   1.5  
tr|Q72P00|Q72P00_LEPIC ATP-dependent DNA ligase OS=Leptospira in...    35   1.5  
tr|A2Q856|A2Q856_ASPNC Remark: Protein is rich in proline OS=Asp...    35   1.5  
tr|B8LVZ5|B8LVZ5_9EURO Ubiquinol-cytochrome c reductase complex ...    35   2.6  
tr|Q5XJD2|Q5XJD2_DANRE Si:dkey-72g4.2 protein (Fragment) OS=Dani...    34   4.4  
tr|A6G5F8|A6G5F8_9DELT Putative uncharacterized protein OS=Plesi...    34   4.4  
tr|A9TRA0|A9TRA0_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.4  
tr|B8P6L3|B8P6L3_9APHY Predicted protein OS=Postia placenta Mad-...    34   4.4  
tr|B4L7E4|B4L7E4_DROMO GI14038 OS=Drosophila mojavensis GN=GI140...    33   5.7  
tr|A2FN34|A2FN34_TRIVA Putative uncharacterized protein OS=Trich...    33   5.7  
tr|Q875M1|Q875M1_KLULA SMY2 OS=Kluyveromyces lactis PE=4 SV=1          33   5.7  
tr|Q6CLY3|Q6CLY3_KLULA KLLA0E24531p OS=Kluyveromyces lactis GN=K...    33   5.7  
tr|B7C9I3|B7C9I3_9FIRM Putative uncharacterized protein OS=Eubac...    33   7.5  
tr|Q5RIJ8|Q5RIJ8_DANRE Novel protein OS=Danio rerio GN=chga PE=2...    33   9.8  
tr|Q4T7F4|Q4T7F4_TETNG Chromosome undetermined SCAF8104, whole g...    33   9.8  
tr|Q9J2M6|Q9J2M6_9GAMA Complement binding protein OS=Rhesus monk...    33   9.8  
tr|Q9R2J6|Q9R2J6_9ZZZZ DNA primase OS=Plasmid ColIb-P9 GN=sogL P...    33   9.8  
tr|Q9R2J5|Q9R2J5_9ZZZZ DNA primase OS=Plasmid ColIb-P9 GN=sogS P...    33   9.8  
tr|B6IC66|B6IC66_ECOSE DNA primase SogL OS=Escherichia coli (str...    33   9.8  
tr|Q4FIH6|Q4FIH6_9ENTR DNA primase OS=Salmonella enterica GN=sog...    33   9.8  
tr|Q4FIH5|Q4FIH5_9ENTR DNA primase OS=Salmonella enterica GN=sog...    33   9.8  
tr|B6BQN2|B6BQN2_9RICK Histone deacetylase family protein OS=Can...    33   9.8  
tr|A6GDK3|A6GDK3_9DELT Peptidase S8 and S53, subtilisin, kexin, ...    33   9.8  
tr|Q16YI3|Q16YI3_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.8  
tr|B6MGV4|B6MGV4_BRAFL Putative uncharacterized protein OS=Branc...    33   9.8  
tr|B5RV46|B5RV46_DEBHA DEHA2G07304p OS=Debaryomyces hansenii GN=...    33   9.8  
tr|A5DWM0|A5DWM0_LODEL Putative uncharacterized protein OS=Lodde...    33   9.8  
tr|A5DIK0|A5DIK0_PICGU Putative uncharacterized protein OS=Pichi...    33   9.8  

>tr|A3KQ03|A3KQ03_DANRE Novel protein similar to vertebrate mannosyl
           (Alpha-1,3-)-glycoprotein
           beta-1,2-N-acetylglucosaminyltransferase (MGAT1)
           OS=Danio rerio GN=CH211-152P11.3-001 PE=4 SV=1
          Length = 541

 Score = 37.4 bits (85), Expect = 0.40
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +1

Query: 319 IWCFWAMLEDIGNLI*AFCLLGAFFFR*WRATLVCFL 429
           +WC WAM+   G+LI    L GAF F  W A L+ FL
Sbjct: 12  VWCHWAMVRKKGSLI----LCGAFLFVAWNALLLLFL 44


>tr|Q5PYI6|Q5PYI6_FUNHE Sodium/hydrogen exchanger OS=Fundulus
           heteroclitus GN=NHE2a PE=2 SV=1
          Length = 716

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 320 FGASGQCWKTLGI-LSEPSVCSVL-SSLGNGELLSCVFSSSLAGSLDPTQVSAVVSVF 487
           +   G  W  LGI LS   VC +  SSLG+  LL C+   SL  ++DP    AV+SVF
Sbjct: 158 YAVLGTLWNVLGIGLSLYGVCLLAPSSLGDISLLHCLLFGSLIAAVDPV---AVLSVF 212


>tr|Q8F7G1|Q8F7G1_LEPIN Probable DNA ligase OS=Leptospira
           interrogans GN=LA0984 PE=4 SV=1
          Length = 501

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
 Frame = -3

Query: 492 EQKTETTADTCVGSKEPAKEDEKTHE-SSSPLPKEESTE--------QTEGSDKIPNV 346
           E + + ++ T    KE  K++ +T E +S+PLP E STE        Q +GSDK+ +V
Sbjct: 114 ENEIKQSSQTSANKKENLKQNSQTQEQNSNPLPSENSTELNKISLYYQGDGSDKVYHV 171


>tr|Q72P00|Q72P00_LEPIC ATP-dependent DNA ligase OS=Leptospira
           interrogans serogroup Icterohaemorrhagiae serovar
           copenhageni GN=LIC_12677 PE=4 SV=1
          Length = 501

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
 Frame = -3

Query: 492 EQKTETTADTCVGSKEPAKEDEKTHE-SSSPLPKEESTE--------QTEGSDKIPNV 346
           E + + ++ T    KE  K++ +T E +S+PLP E STE        Q +GSDK+ +V
Sbjct: 114 ENEIKQSSQTSANKKENLKQNSQTQEQNSNPLPSENSTELNKISLYYQGDGSDKVYHV 171


>tr|A2Q856|A2Q856_ASPNC Remark: Protein is rich in proline
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An01g03130 PE=4 SV=1
          Length = 261

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 495 EEQKTETTADTCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDKIPNVFQHCPE 328
           +EQK E T DT     +  +++E   E   P PK+E  EQ    +K P   Q   E
Sbjct: 46  QEQKPEDTNDTTEDKPKEEEKEEDKQEDEDPQPKQEEQEQEPEPEKEPQPKQEPQE 101


>tr|B8LVZ5|B8LVZ5_9EURO Ubiquinol-cytochrome c reductase complex 17
           kd protein OS=Talaromyces stipitatus ATCC 10500
           GN=TSTA_077280 PE=4 SV=1
          Length = 146

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = -3

Query: 438 KEDEKTHESSSPLPKEESTEQTEGSDKIPNVFQHCPEAPNASRQVDVST*CLSEFCWRML 259
           ++DEKT ESS   P EES+E TE ++  P   +   E        D+    L E C    
Sbjct: 36  QQDEKTEESSE--PAEESSEATEEAE--PEAEEEEEEEEEEEEPEDIKP-KLEEECANSK 90

Query: 258 VCQVL*HHFFLCI 220
            C    HHF  C+
Sbjct: 91  TCAPYKHHFDECV 103


>tr|Q5XJD2|Q5XJD2_DANRE Si:dkey-72g4.2 protein (Fragment) OS=Danio
           rerio GN=si:dkey-72g4.2 PE=2 SV=1
          Length = 535

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 495 EEQKTETTADTCVGSKEPAKEDEKTHESSSP-LPKEESTEQTEGSDK 358
           EE+  E   D    SKE A EDE+  E   P   KEE+ E  EG ++
Sbjct: 349 EEEAKEMEGDEAETSKEEAPEDEEEKEEEEPETDKEEAPEDEEGKEE 395


>tr|A6G5F8|A6G5F8_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_03493 PE=4 SV=1
          Length = 213

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 495 EEQKTETTAD-TCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDK 358
           EE+ T+TT D T    +E   E+E T E  S   +EEST + E +++
Sbjct: 52  EEESTDTTEDETTTEEEESTTEEESTTEEESTTEEEESTTEEETTEE 98


>tr|A9TRA0|A9TRA0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171506 PE=4 SV=1
          Length = 673

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 278 SDRHQVLTSTCLEAFGASGQCWKTLGILSEPS--VCSVLSSLGNGE 409
           S  +++L   C+  + A G+CWK  G+LS+ S  + S + +LG  E
Sbjct: 403 SGSNRMLPPPCIHRYAAVGRCWKEQGVLSKDSSKLVSCIKALGGVE 448


>tr|B8P6L3|B8P6L3_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_99035 PE=4 SV=1
          Length = 633

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 24/83 (28%), Positives = 35/83 (42%)
 Frame = -3

Query: 495 EEQKTETTADTCVGSKEPAKEDEKTHESSSPLPKEESTEQTEGSDKIPNVFQHCPEAPNA 316
           EE++ E   +    ++EPA+E+E+           E  EQ+         FQHC E  NA
Sbjct: 510 EEKEEEQPQEEESPAEEPAEEEEEEEPEDILPALREECEQSAKCLAATKHFQHCEEKVNA 569

Query: 315 SRQVDVST*CLSEFCWRMLVCQV 247
            +       C  EFC   L+  V
Sbjct: 570 GKGY-AHEDCTEEFCTYPLMTSV 591