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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919300
Clone id YMU001_000123_E03
Library
Length 390
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGAATTCGCGGCCGCAGGAATATGTTTTTATTTTGCAGCACAACCCCATCATCCT
ATGATTATTATTCTGAATGCCATTTGACACTCCTATACAGATGAAAATTTGAGCGCCTCC
TTTTATCAAAAGATTGGTCGCCTTGTCTACTACTTCACAACTGGCTCAAACTTCCTAGAT
CCATTCATTACATGCGTGTACTAAATTACGACACACGTTGGATCTAACATATGTAAAACA
CTAATTGCCATATTTAGAAAGGAGGTGCCTGTCAGTTAGACTCAACTTTCAGCACCTCAT
GCTTTTACCTGTTAAATGCGATTACGACAACCGCTTTTGGGTCTGTGTAACCTTCTATGT
CCTTGCTCTCTTACTGCAAGATGGGCATTT
■■Homology search results ■■ -
sp_hit_id Q9EPI9
Definition sp|Q9EPI9|KCNH5_RAT Potassium voltage-gated channel subfamily H member 5 OS=Rattus norvegicus
Align length 40
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919300|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_E03.
         (364 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EPI9|KCNH5_RAT Potassium voltage-gated channel subfamily H ...    29   8.4  
sp|Q920E3|KCNH5_MOUSE Potassium voltage-gated channel subfamily ...    29   8.4  
sp|Q8NCM2|KCNH5_HUMAN Potassium voltage-gated channel subfamily ...    29   8.4  

>sp|Q9EPI9|KCNH5_RAT Potassium voltage-gated channel subfamily H
           member 5 OS=Rattus norvegicus GN=Kcnh5 PE=2 SV=1
          Length = 988

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 211 NTNCHI*KGGACQLDSTFSTSCFYLLNAITTTAFGSV*PS 330
           NT+  I +GG  + DS + +S ++ + ++TT  FG++ P+
Sbjct: 403 NTSAGIWEGGPSK-DSLYVSSLYFTMTSLTTIGFGNIAPT 441


>sp|Q920E3|KCNH5_MOUSE Potassium voltage-gated channel subfamily H
           member 5 OS=Mus musculus GN=Kcnh5 PE=2 SV=2
          Length = 988

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 211 NTNCHI*KGGACQLDSTFSTSCFYLLNAITTTAFGSV*PS 330
           NT+  I +GG  + DS + +S ++ + ++TT  FG++ P+
Sbjct: 403 NTSAGIWEGGPSK-DSLYVSSLYFTMTSLTTIGFGNIAPT 441


>sp|Q8NCM2|KCNH5_HUMAN Potassium voltage-gated channel subfamily H
           member 5 OS=Homo sapiens GN=KCNH5 PE=2 SV=2
          Length = 988

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 211 NTNCHI*KGGACQLDSTFSTSCFYLLNAITTTAFGSV*PS 330
           NT+  I +GG  + DS + +S ++ + ++TT  FG++ P+
Sbjct: 403 NTSAGIWEGGPSK-DSLYVSSLYFTMTSLTTIGFGNIAPT 441
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919300|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_E03.
         (364 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******