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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919303
Clone id YMU001_000123_E06
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACAATTAGCAGTATTTTAGCAAGTTGTGGGATGTCAAATTGCCCTAGTCGACTACAGAT
TATTACCCTATAAAGATGACCCCAAGGTCACCATTCTCATCATCGGAACAACAATACCCT
CTCATGGGCAACCAGCACATAGTACCCATCAGCCCTCTGGCGTTTTCCGCTAGCAATACC
TCTTCAACACCCTAGCATTTTGCCTAGCATCAACCTTCAACCATCATTGTCCTCTTCTTC
AGCTCACCCATCCCCCAACCTAGCGTTTTCCGGCATAACCAGCAAGACCAGCAGTTCATC
AGCATTGGCAACCAGCACCCTTAGCGTATTTGCATCAGTATCAGCCTGGCAGTGTTTTGT
GCCAGATCAGCCATAGCATCAAATCAGCCTCCGGCACTCATCAGCCCAGTTTTCAGCCCA
TTAACGACATCCGCATTAGTAGATCAGTCCATAGCATGGTCAAGTTGCACATCCCTATCA
GTTCCACTAGCATATATTCATTGCAGCCCTTAGACTTGCAAACACAAGTATTAGAAGCAA
GATCCCATCATCAGA
■■Homology search results ■■ -
sp_hit_id P16395
Definition sp|P16395|ACM1_DROME Muscarinic acetylcholine receptor DM1 OS=Drosophila melanogaster
Align length 42
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919303|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_E06.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16395|ACM1_DROME Muscarinic acetylcholine receptor DM1 OS=Dr...    33   1.2  
sp|Q6P6V7|EAPA2_RAT Experimental autoimmune prostatitis antigen ...    32   1.6  
sp|Q28FN6|OTX2_XENTR Homeobox protein OTX2 OS=Xenopus tropicalis...    32   2.7  
sp|P80206|OTX2_MOUSE Homeobox protein OTX2 OS=Mus musculus GN=Ot...    32   2.7  
sp|P32243|OTX2_HUMAN Homeobox protein OTX2 OS=Homo sapiens GN=OT...    32   2.7  
sp|Q6QR59|EAPA2_MOUSE Experimental autoimmune prostatitis antige...    32   2.7  
sp|Q91813|OTX2A_XENLA Homeobox protein OTX2-A OS=Xenopus laevis ...    31   3.6  

>sp|P16395|ACM1_DROME Muscarinic acetylcholine receptor DM1
           OS=Drosophila melanogaster GN=mAcR-60C PE=2 SV=2
          Length = 805

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 370 AIASNQPPALISPVFSPLTTSALVDQSIAWSSCTSLSVPLAY 495
           A+A++ PP+++ P+F  +TTS     +   S+ T+ + P  Y
Sbjct: 8   ALAAHGPPSILEPLFKTVTTSTTTTTTTTTSTTTTTASPAGY 49


>sp|Q6P6V7|EAPA2_RAT Experimental autoimmune prostatitis antigen 2
           homolog OS=Rattus norvegicus GN=Eapa2 PE=2 SV=1
          Length = 914

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = +1

Query: 283 QDQQFISIGNQHP*RICIS----ISLAVFCARSAIASNQ---PPALISPVFSPLTTSALV 441
           Q Q F S+  QHP     S    +SLA    +S +  +Q   PP L+SP  SP+T     
Sbjct: 470 QSQGFPSVTEQHPITKGSSQAFLLSLAYELFKSGVDRSQLLPPPTLLSPTESPMTIKIST 529

Query: 442 DQSIAWSSCTSLSVP 486
               +W S T L +P
Sbjct: 530 GNDNSWVS-TGLYLP 543


>sp|Q28FN6|OTX2_XENTR Homeobox protein OTX2 OS=Xenopus tropicalis
           GN=otx2 PE=2 SV=1
          Length = 289

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +1

Query: 337 SISLAVFCARSAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTSLSVPLAYIHCS 507
           S S+ V  + +A  S   PA ISP+  PL+TS         SSC   S P+ Y   S
Sbjct: 136 STSVPVISSSTAPVSIWSPASISPLSDPLSTS---------SSCMQRSYPMTYTQAS 183


>sp|P80206|OTX2_MOUSE Homeobox protein OTX2 OS=Mus musculus GN=Otx2
           PE=1 SV=1
          Length = 289

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +1

Query: 337 SISLAVFCARSAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTSLSVPLAYIHCS 507
           S S+    + SA  S   PA ISP+  PL+TS         SSC   S P+ Y   S
Sbjct: 136 STSVPTIASSSAPVSIWSPASISPLSDPLSTS---------SSCMQRSYPMTYTQAS 183


>sp|P32243|OTX2_HUMAN Homeobox protein OTX2 OS=Homo sapiens GN=OTX2
           PE=1 SV=1
          Length = 289

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +1

Query: 337 SISLAVFCARSAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTSLSVPLAYIHCS 507
           S S+    + SA  S   PA ISP+  PL+TS         SSC   S P+ Y   S
Sbjct: 136 STSVPTIASSSAPVSIWSPASISPLSDPLSTS---------SSCMQRSYPMTYTQAS 183


>sp|Q6QR59|EAPA2_MOUSE Experimental autoimmune prostatitis antigen 2
           OS=Mus musculus GN=Eapa2 PE=2 SV=1
          Length = 914

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +1

Query: 283 QDQQFISIGNQHP*RICIS----ISLAVFCARSAIASNQ---PPALISPVFSPLTTSALV 441
           Q + F S+  Q+P     S    +SLA    +S +  +Q   PPAL+ P  SP+T     
Sbjct: 470 QSKDFPSVTEQYPIARGSSQAFLLSLAYELFKSGVDRSQLLPPPALLPPTESPITIKIST 529

Query: 442 DQSIAWSSCTSLSVP 486
           D   +W S T L +P
Sbjct: 530 DNDNSWVS-TGLYLP 543


>sp|Q91813|OTX2A_XENLA Homeobox protein OTX2-A OS=Xenopus laevis
           GN=otx2-A PE=1 SV=1
          Length = 288

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +1

Query: 337 SISLAVFCARSAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTSLSVPLAYIHCS 507
           S S+ V  + +A  S   PA +SP+  PL+TS         SSC   S P+ Y   S
Sbjct: 136 STSVPVISSSTAPVSIWSPASVSPLSDPLSTS---------SSCMQRSYPMTYTQAS 183
tr_hit_id B1PJ35
Definition tr|B1PJ35|B1PJ35_PHATR Pol protein (Fragment) OS=Phaeodactylum tricornutum
Align length 51
Score (bit) 34.7
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919303|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_E06.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1PJ35|B1PJ35_PHATR Pol protein (Fragment) OS=Phaeodactylum t...    35   3.6  
tr|Q5KF54|Q5KF54_CRYNE Serine/threonine protein kinase FSK, puta...    34   4.6  
tr|Q55R12|Q55R12_CRYNE Putative uncharacterized protein OS=Crypt...    34   4.6  
tr|A7Q2F8|A7Q2F8_VITVI Chromosome chr1 scaffold_46, whole genome...    34   4.6  
tr|Q4PGW9|Q4PGW9_USTMA Putative uncharacterized protein OS=Ustil...    34   4.6  
tr|B7GCK2|B7GCK2_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.1  
tr|B7GBJ8|B7GBJ8_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.1  
tr|B7G5R4|B7G5R4_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.1  
tr|B7G2H4|B7G2H4_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.1  
tr|B7FUJ1|B7FUJ1_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.1  
tr|B7FR86|B7FR86_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.1  
tr|B5Y4B7|B5Y4B7_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.1  

>tr|B1PJ35|B1PJ35_PHATR Pol protein (Fragment) OS=Phaeodactylum
           tricornutum PE=4 SV=1
          Length = 1263

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 364 RSAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTS--LSVPLAYIHCSP 510
           +S++A N PP   SP F P         +IA + CT   LS  +A+IHC P
Sbjct: 20  KSSVAPNTPPLASSPPFFP-------PDAIADTGCTGHFLSTNIAHIHCQP 63


>tr|Q5KF54|Q5KF54_CRYNE Serine/threonine protein kinase FSK,
           putative OS=Cryptococcus neoformans GN=CNF02940 PE=4
           SV=1
          Length = 764

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 312 PAPLAYLHQYQPGSVLCQISHSIKSASGTHQPSFQPINDIRISRSVHSMVK 464
           P   AY+ QY+P        H + ++ GTH P+  PIN++ I R   S++K
Sbjct: 674 PTFAAYMQQYKP-------QHVVDASGGTHHPTPPPINNL-IPRECRSVIK 716


>tr|Q55R12|Q55R12_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBF1770 PE=4 SV=1
          Length = 764

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 312 PAPLAYLHQYQPGSVLCQISHSIKSASGTHQPSFQPINDIRISRSVHSMVK 464
           P   AY+ QY+P        H + ++ GTH P+  PIN++ I R   S++K
Sbjct: 674 PTFAAYMQQYKP-------QHVVDASGGTHHPTPPPINNL-IPRECRSVIK 716


>tr|A7Q2F8|A7Q2F8_VITVI Chromosome chr1 scaffold_46, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028868001
           PE=4 SV=1
          Length = 943

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 79  TPRSPFSSSEQQYPLMGNQHIVPISPLAFSASNTSST 189
           +P  PF S+  QYPL  ++   P+ P  FS S+TS T
Sbjct: 865 SPAVPFPSTPFQYPLFSSRTNFPLLPATFSGSSTSFT 901


>tr|Q4PGW9|Q4PGW9_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM00644.1 PE=4 SV=1
          Length = 2184

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
 Frame = +1

Query: 133 QHIVPISP---LAFSASNTSSTP*HFA*HQPS------TIIVLFFSSPIPQPSVFRH--- 276
           QH+ P+SP   L F  S+ S        H+P       +I  L FS+ IP  S+F H   
Sbjct: 274 QHLAPLSPRPWLTFPRSDKSR-------HRPLYGRISISISNLDFSNKIP--SLFLHPNE 324

Query: 277 NQQDQQFISIGNQHP*RICIS--ISLAVFCARSAIASNQPPALISPVFSPLTTSALV 441
           +QQ+QQ  +I ++ P   CIS         A   +A     A   P  S L+TSA V
Sbjct: 325 HQQEQQLTTIASEAPGCSCISNTAKQETIHASFTLADRPASAGFYPHNSALSTSATV 381


>tr|B7GCK2|B7GCK2_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_40843 PE=4 SV=1
          Length = 903

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 367 SAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTS--LSVPLAYIHCSP 510
           S++A N PP   SP F P         +IA + CT   LS  +A+IHC P
Sbjct: 330 SSVAPNTPPLASSPPFFP-------PDAIADTGCTGHFLSTNIAHIHCQP 372


>tr|B7GBJ8|B7GBJ8_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_40608 PE=4 SV=1
          Length = 911

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 367 SAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTS--LSVPLAYIHCSP 510
           S++A N PP   SP F P         +IA + CT   LS  +A+IHC P
Sbjct: 301 SSVAPNTPPLASSPPFFP-------PDAIADTGCTGHFLSTNIAHIHCQP 343


>tr|B7G5R4|B7G5R4_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_38388 PE=4 SV=1
          Length = 1277

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 367 SAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTS--LSVPLAYIHCSP 510
           S++A N PP   SP F P         +IA + CT   LS  +A+IHC P
Sbjct: 330 SSVAPNTPPLASSPPFFP-------PDAIADTGCTGHFLSTNIAHIHCQP 372


>tr|B7G2H4|B7G2H4_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_37227 PE=4 SV=1
          Length = 1144

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 367 SAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTS--LSVPLAYIHCSP 510
           S++A N PP   SP F P         +IA + CT   LS  +A+IHC P
Sbjct: 318 SSVAPNTPPLASSPPFFP-------PDAIADTGCTGHFLSTNIAHIHCQP 360


>tr|B7FUJ1|B7FUJ1_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_34031 PE=4 SV=1
          Length = 1284

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 367 SAIASNQPPALISPVFSPLTTSALVDQSIAWSSCTS--LSVPLAYIHCSP 510
           S++A N PP   SP F P         +IA + CT   LS  +A+IHC P
Sbjct: 330 SSVAPNTPPLASSPPFFP-------PDAIADTGCTGHFLSTNIAHIHCQP 372