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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919305
Clone id YMU001_000123_E08
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGGTAAATTTGACTCCGACGTGCTCCATACCTCAAGTACGCAAGCACACATTGCATGAT
TCTGTTCTGCACTCCGAGGCGCATCAATCGGCACCAGTAAATGTGCCCAATTGGCCCAAG
AATATTCTTCAAAAAGATCCCACTGCAATCAACTCCTATAGCACTGAGAAGATCATTGGT
GAAAATGATGATATTAAGAGGTTACCTCCTCATGTGATGCTGGCAAAGGAGTATGCTCGC
GACCAAAGAATGACTTCTTCAGTATGCGAGGGTCAAGGGAGGACTCTTAAAGGCAGAGAT
ATGCGGCGTGTGCGCAATGCAGTGTGGCGTCAGATTGGATTTGCTGATTGATATTATATT
ATTGGATCTTCCAATTTTATGTGGTGACATTAATGACACCATTTTGTGATCAGTCATGGC
CAAGCCGACGATGGCCGCCTAATATACATGTAGATTCCAAGGAAGAGATTACTAAGATAG
TACAAAGAGAGGCTTTTGTATGTAAACTAATTATGGAAAGATCTCGAGACTCATGAGAGA
A
■■Homology search results ■■ -
sp_hit_id Q47TI0
Definition sp|Q47TI0|DNAK_THEFY Chaperone protein dnaK OS=Thermobifida fusca (strain YX)
Align length 55
Score (bit) 30.0
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919305|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_E08.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q47TI0|DNAK_THEFY Chaperone protein dnaK OS=Thermobifida fusc...    30   7.0  
sp|Q9HK06|TRPD_THEAC Anthranilate phosphoribosyltransferase OS=T...    30   9.1  
sp|A4J0C0|SECB2_FRATW Protein-export protein secB 2 OS=Francisel...    30   9.1  
sp|Q5NE99|SECB2_FRATT Protein-export protein secB 2 OS=Francisel...    30   9.1  
sp|Q14FQ2|SECB2_FRAT1 Protein-export protein secB 2 OS=Francisel...    30   9.1  
sp|Q0BPA9|SECB1_FRATO Protein-export protein secB 1 OS=Francisel...    30   9.1  
sp|A0Q467|SECB1_FRATN Protein-export protein secB 1 OS=Francisel...    30   9.1  
sp|Q2A630|SECB1_FRATH Protein-export protein secB 1 OS=Francisel...    30   9.1  
sp|A7N938|SECB1_FRATF Protein-export protein secB 1 OS=Francisel...    30   9.1  

>sp|Q47TI0|DNAK_THEFY Chaperone protein dnaK OS=Thermobifida fusca
           (strain YX) GN=dnaK PE=2 SV=1
          Length = 613

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 141 YSTEKIIGENDDIKRLPPHVMLAKEYARDQRMTSSVCEGQGRTLKGRDMRRVRNA 305
           Y TEK+I EN+D  ++P  V         +  T    +G  + L+G D+  +R+A
Sbjct: 516 YQTEKVISENED--KIPEDV---------KNETKEALDGLKKALEGSDIEAIRSA 559


>sp|Q9HK06|TRPD_THEAC Anthranilate phosphoribosyltransferase
           OS=Thermoplasma acidophilum GN=trpD PE=3 SV=1
          Length = 322

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 15  PQVRKHTLHDSVLHSEAHQSAP-VNVPNWPKNILQKDPTAINSYSTEKIIGENDD 176
           P  +   +H S L SE++  A  +  P   +NI   DP AI+  +   I GEN+D
Sbjct: 219 PFAKARIMHVSDLVSESYVDASSLTGPLERRNIASADPGAISGLTLSAIRGENED 273


>sp|A4J0C0|SECB2_FRATW Protein-export protein secB 2 OS=Francisella
           tularensis subsp. tularensis (strain WY96-3418) GN=secB2
           PE=3 SV=1
          Length = 149

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 PFCDQSWPSRRWPPNIHVDSKEEITKIVQREAFVCKLIME 502
           P  D+ W +  W P +H D K E TK+ +   +   L +E
Sbjct: 24  PNSDKIWTTN-WKPELHTDLKVEATKLPEENTYETVLTLE 62


>sp|Q5NE99|SECB2_FRATT Protein-export protein secB 2 OS=Francisella
           tularensis subsp. tularensis GN=secB2 PE=3 SV=1
          Length = 149

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 PFCDQSWPSRRWPPNIHVDSKEEITKIVQREAFVCKLIME 502
           P  D+ W +  W P +H D K E TK+ +   +   L +E
Sbjct: 24  PNSDKIWTTN-WKPELHTDLKVEATKLPEENTYETVLTLE 62


>sp|Q14FQ2|SECB2_FRAT1 Protein-export protein secB 2 OS=Francisella
           tularensis subsp. tularensis (strain FSC 198) GN=secB2
           PE=3 SV=1
          Length = 149

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 PFCDQSWPSRRWPPNIHVDSKEEITKIVQREAFVCKLIME 502
           P  D+ W +  W P +H D K E TK+ +   +   L +E
Sbjct: 24  PNSDKIWTTN-WKPELHTDLKVEATKLPEENTYETVLTLE 62


>sp|Q0BPA9|SECB1_FRATO Protein-export protein secB 1 OS=Francisella
           tularensis subsp. holarctica (strain OSU18) GN=secB1
           PE=3 SV=1
          Length = 149

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 PFCDQSWPSRRWPPNIHVDSKEEITKIVQREAFVCKLIME 502
           P  D+ W +  W P +H D K E TK+ +   +   L +E
Sbjct: 24  PNSDKIWTTN-WKPELHTDLKVEATKLPEENTYETVLTLE 62


>sp|A0Q467|SECB1_FRATN Protein-export protein secB 1 OS=Francisella
           tularensis subsp. novicida (strain U112) GN=secB1 PE=3
           SV=1
          Length = 149

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 PFCDQSWPSRRWPPNIHVDSKEEITKIVQREAFVCKLIME 502
           P  D+ W +  W P +H D K E TK+ +   +   L +E
Sbjct: 24  PNSDKIWTTN-WKPELHTDLKVEATKLPEENTYETVLTLE 62


>sp|Q2A630|SECB1_FRATH Protein-export protein secB 1 OS=Francisella
           tularensis subsp. holarctica (strain LVS) GN=secB1 PE=3
           SV=1
          Length = 149

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 PFCDQSWPSRRWPPNIHVDSKEEITKIVQREAFVCKLIME 502
           P  D+ W +  W P +H D K E TK+ +   +   L +E
Sbjct: 24  PNSDKIWTTN-WKPELHTDLKVEATKLPEENTYETVLTLE 62


>sp|A7N938|SECB1_FRATF Protein-export protein secB 1 OS=Francisella
           tularensis subsp. holarctica (strain FTA) GN=secB1 PE=3
           SV=1
          Length = 149

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 383 PFCDQSWPSRRWPPNIHVDSKEEITKIVQREAFVCKLIME 502
           P  D+ W +  W P +H D K E TK+ +   +   L +E
Sbjct: 24  PNSDKIWTTN-WKPELHTDLKVEATKLPEENTYETVLTLE 62
tr_hit_id A9TXR4
Definition tr|A9TXR4|A9TXR4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 109
Score (bit) 95.5
E-value 1.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919305|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_E08.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TXR4|A9TXR4_PHYPA Predicted protein OS=Physcomitrella paten...    96   1e-18
tr|A9SFH4|A9SFH4_PHYPA Predicted protein OS=Physcomitrella paten...    92   1e-17
tr|A9NN09|A9NN09_PICSI Putative uncharacterized protein OS=Picea...    91   3e-17
tr|A9P1L4|A9P1L4_PICSI Putative uncharacterized protein OS=Picea...    90   6e-17
tr|A9NX27|A9NX27_PICSI Putative uncharacterized protein OS=Picea...    90   6e-17
tr|Q5N7G7|Q5N7G7_ORYSJ cDNA clone:002-142-B04, full insert seque...    81   3e-14
tr|A2ZZU0|A2ZZU0_ORYSJ Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A2WX85|A2WX85_ORYSI Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A9NMX4|A9NMX4_PICSI Putative uncharacterized protein OS=Picea...    80   6e-14
tr|A7QZN8|A7QZN8_VITVI Chromosome chr10 scaffold_282, whole geno...    80   6e-14
tr|A5B204|A5B204_VITVI Putative uncharacterized protein OS=Vitis...    80   6e-14
tr|A3ADF2|A3ADF2_ORYSJ Putative uncharacterized protein OS=Oryza...    80   6e-14
tr|B8LNK4|B8LNK4_PICSI Putative uncharacterized protein OS=Picea...    80   8e-14
tr|A7P0P7|A7P0P7_VITVI Chromosome chr19 scaffold_4, whole genome...    79   1e-13
tr|Q8GZX5|Q8GZX5_ORYSJ Os03g0113900 protein OS=Oryza sativa subs...    78   2e-13
tr|A9NKT6|A9NKT6_PICSI Putative uncharacterized protein OS=Picea...    78   3e-13
tr|A7QF88|A7QF88_VITVI Chromosome undetermined scaffold_87, whol...    78   3e-13
tr|A2XBQ2|A2XBQ2_ORYSI Putative uncharacterized protein OS=Oryza...    78   3e-13
tr|B8LMT0|B8LMT0_PICSI Putative uncharacterized protein OS=Picea...    77   4e-13
tr|A7PPA2|A7PPA2_VITVI Chromosome chr8 scaffold_23, whole genome...    77   5e-13
tr|A5BT05|A5BT05_VITVI Putative uncharacterized protein OS=Vitis...    77   5e-13
tr|Q2HV51|Q2HV51_MEDTR Putative uncharacterized protein OS=Medic...    77   7e-13
tr|B4FL74|B4FL74_MAIZE Putative uncharacterized protein OS=Zea m...    77   7e-13
tr|A5BAT1|A5BAT1_VITVI Putative uncharacterized protein OS=Vitis...    76   9e-13
tr|Q7XUJ4|Q7XUJ4_ORYSJ Os04g0542000 protein OS=Oryza sativa subs...    76   1e-12
tr|Q01IJ8|Q01IJ8_ORYSA H0501D11.6 protein OS=Oryza sativa GN=H05...    76   1e-12
tr|A3AW10|A3AW10_ORYSJ Putative uncharacterized protein OS=Oryza...    76   1e-12
tr|A2XW09|A2XW09_ORYSI Putative uncharacterized protein OS=Oryza...    76   1e-12
tr|B6TEP1|B6TEP1_MAIZE Putative uncharacterized protein OS=Zea m...    75   2e-12
tr|A2XW11|A2XW11_ORYSI Putative uncharacterized protein OS=Oryza...    74   3e-12

>tr|A9TXR4|A9TXR4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172578 PE=4 SV=1
          Length = 237

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
 Frame = +3

Query: 12  IPQVRKHTLHDSVLHSEAHQSAPVNVPNWPKNI--LQKDPTAINSYSTEKIIGENDDIKR 185
           IPQ+R+ +    +     HQSAPVNVP+W K +   +K   A +   ++K   E++  +R
Sbjct: 137 IPQIRESSPRQMM-----HQSAPVNVPDWSKILGAEKKHRWADDDVDSDK---EDEQEER 188

Query: 186 LPPHVMLAKEYARDQRMTSSVCEGQGRTLKGRDMRRVRNAVWRQIGFAD 332
           LPPH+ + +EYA+ Q+ T SVCEG GRTLKGRD+ RVRNAV RQ GF D
Sbjct: 189 LPPHLHIQREYAQSQQTTFSVCEGAGRTLKGRDLSRVRNAVLRQTGFLD 237


>tr|A9SFH4|A9SFH4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_128975 PE=4 SV=1
          Length = 160

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
 Frame = +3

Query: 66  HQSAPVNVPNWPKNI--LQKDPTAINSYSTEKIIGENDDIKRLPPHVMLAKEYARDQRMT 239
           HQSAPVNVP+W K +   +K   A     ++K   E++  +RLPPH+ + +EYA+ Q  T
Sbjct: 73  HQSAPVNVPDWSKILGAEKKHKWADEDVDSDK---EDEQEERLPPHLHIQREYAQSQMTT 129

Query: 240 SSVCEGQGRTLKGRDMRRVRNAVWRQIGFAD 332
            SVCEG GRTLKGRD+ RVRNAV RQ GF D
Sbjct: 130 FSVCEGAGRTLKGRDLSRVRNAVLRQTGFLD 160


>tr|A9NN09|A9NN09_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 276

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 7/94 (7%)
 Frame = +3

Query: 66  HQSAPVNVPNWPK-------NILQKDPTAINSYSTEKIIGENDDIKRLPPHVMLAKEYAR 224
           HQSAPVNVP+W K        + + +P  + S + ++   + D    LPPH  LA+E AR
Sbjct: 184 HQSAPVNVPDWSKILGVGMDRLKENNPNLLFSAAADE---DEDGGDMLPPHEYLAREQAR 240

Query: 225 DQRMTSSVCEGQGRTLKGRDMRRVRNAVWRQIGF 326
            Q  T+SV EG GRTLKGRDM RVRNAVWRQ GF
Sbjct: 241 SQMTTTSVFEGVGRTLKGRDMSRVRNAVWRQTGF 274


>tr|A9P1L4|A9P1L4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 276

 Score = 90.1 bits (222), Expect = 6e-17
 Identities = 49/94 (52%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
 Frame = +3

Query: 66  HQSAPVNVPNWPK-------NILQKDPTAINSYSTEKIIGENDDIKRLPPHVMLAKEYAR 224
           HQSAPVNVP+W K        + + +P    S + ++   + D    LPPH  LA+E AR
Sbjct: 184 HQSAPVNVPDWSKILGVGMDRLKENNPNLFFSAAADE---DEDGGDMLPPHEYLAREQAR 240

Query: 225 DQRMTSSVCEGQGRTLKGRDMRRVRNAVWRQIGF 326
            Q  T+SV EG GRTLKGRDM RVRNAVWRQ GF
Sbjct: 241 SQMTTTSVFEGVGRTLKGRDMSRVRNAVWRQTGF 274


>tr|A9NX27|A9NX27_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 241

 Score = 90.1 bits (222), Expect = 6e-17
 Identities = 49/94 (52%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
 Frame = +3

Query: 66  HQSAPVNVPNWPK-------NILQKDPTAINSYSTEKIIGENDDIKRLPPHVMLAKEYAR 224
           HQSAPVNVP+W K        + + +P    S + ++   + D    LPPH  LA+E AR
Sbjct: 149 HQSAPVNVPDWSKILGVGMDRLKENNPNLFFSAAADE---DEDGGDMLPPHEYLAREQAR 205

Query: 225 DQRMTSSVCEGQGRTLKGRDMRRVRNAVWRQIGF 326
            Q  T+SV EG GRTLKGRDM RVRNAVWRQ GF
Sbjct: 206 SQMTTTSVFEGVGRTLKGRDMSRVRNAVWRQTGF 239


>tr|Q5N7G7|Q5N7G7_ORYSJ cDNA clone:002-142-B04, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0423B08.12 PE=2 SV=1
          Length = 219

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
 Frame = +3

Query: 69  QSAPVNVPNWPKNILQKDPTAINSYSTEKIIGENDDIKRLPPHVMLAKEYARDQRMTS-S 245
           QSAPVNVP     + Q    ++ +   +    ++DD + LPPH M+A+  ARD  MT+ S
Sbjct: 136 QSAPVNVP-----VAQFRRLSVEALMDKAEDDDDDDEEMLPPHEMVARARARDSPMTTFS 190

Query: 246 VCEGQGRTLKGRDMRRVRNAVWRQIGFAD 332
           V EG GRTLKGRD+R+VRNAVWR+ GF D
Sbjct: 191 VLEGAGRTLKGRDLRQVRNAVWRKTGFLD 219


>tr|A2ZZU0|A2ZZU0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004062 PE=4 SV=1
          Length = 219

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
 Frame = +3

Query: 69  QSAPVNVPNWPKNILQKDPTAINSYSTEKIIGENDDIKRLPPHVMLAKEYARDQRMTS-S 245
           QSAPVNVP     + Q    ++ +   +    ++DD + LPPH M+A+  ARD  MT+ S
Sbjct: 136 QSAPVNVP-----VAQFRRLSVEALMDKAEDDDDDDEEMLPPHEMVARARARDSPMTTFS 190

Query: 246 VCEGQGRTLKGRDMRRVRNAVWRQIGFAD 332
           V EG GRTLKGRD+R+VRNAVWR+ GF D
Sbjct: 191 VLEGAGRTLKGRDLRQVRNAVWRKTGFLD 219


>tr|A2WX85|A2WX85_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04528 PE=4 SV=1
          Length = 219

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
 Frame = +3

Query: 69  QSAPVNVPNWPKNILQKDPTAINSYSTEKIIGENDDIKRLPPHVMLAKEYARDQRMTS-S 245
           QSAPVNVP     + Q    ++ +   +    ++DD + LPPH M+A+  ARD  MT+ S
Sbjct: 136 QSAPVNVP-----VAQFRRLSVEALMDKAEDDDDDDEEMLPPHEMVARARARDSPMTTFS 190

Query: 246 VCEGQGRTLKGRDMRRVRNAVWRQIGFAD 332
           V EG GRTLKGRD+R+VRNAVWR+ GF D
Sbjct: 191 VLEGAGRTLKGRDLRQVRNAVWRKTGFLD 219


>tr|A9NMX4|A9NMX4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 182

 Score = 80.1 bits (196), Expect = 6e-14
 Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
 Frame = +3

Query: 66  HQSAPVNVPNWPKNILQKDPTAINSYSTEKIIG---ENDDIKRLPPHVMLAKEYARDQRM 236
           HQSAPVNVP+W K +        N Y+ +  +    E ++ +RLPPH  LA+E+AR +  
Sbjct: 92  HQSAPVNVPDWSKILGVDHRKDQNPYAVDVDMAADEEEEEEERLPPHEYLAREHARCRIS 151

Query: 237 T-SSVCEGQGRTLKGRDMRRVRNAVWRQIGF 326
           T SSV EG G  LKGRDM RVRNAVWRQ GF
Sbjct: 152 TPSSVLEGVG--LKGRDMSRVRNAVWRQTGF 180


>tr|A7QZN8|A7QZN8_VITVI Chromosome chr10 scaffold_282, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00010751001
           PE=4 SV=1
          Length = 213

 Score = 80.1 bits (196), Expect = 6e-14
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
 Frame = +3

Query: 72  SAPVNVPNWPKNILQKDPTAINSYSTEKIIGENDD--IKRLPPHVMLAKEYARDQRMTS- 242
           SAPVNVP+W K IL+ D       S E +   +DD  ++ +PPH  LA+EYA  ++M + 
Sbjct: 132 SAPVNVPDWHK-ILRVD-------SVESLHDSDDDRELEMVPPHEYLAREYAASRKMAAT 183

Query: 243 SVCEGQGRTLKGRDMRRVRNAVWRQIGF 326
           SV EG GRTLKGRDM RVR+AVW Q GF
Sbjct: 184 SVLEGVGRTLKGRDMSRVRDAVWSQTGF 211